Title: Genetic control of photoprotection and photosystem II operating efficiency in plants

Journal Article · · New Phytologist
DOI: https://doi.org/10.1111/nph.18980 · OSTI ID:1974636
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [3]; ORCiD logo [4]
  1. Department of Biochemistry Beadle Center, University of Nebraska‐Lincoln Lincoln NE 68588 USA, Center for Plant Science Innovation University of Nebraska‐Lincoln Lincoln NE 68588 USA
  2. Center for Plant Science Innovation University of Nebraska‐Lincoln Lincoln NE 68588 USA, Department of Agronomy and Horticulture University of Nebraska‐Lincoln Lincoln NE 68583 USA, Department of Plant Molecular Ecophysiology, Faculty of Biology Institute of Plant Experimental Biology and Biotechnology, University of Warsaw 02‐096 Warsaw Poland
  3. Center for Plant Science Innovation University of Nebraska‐Lincoln Lincoln NE 68588 USA, Department of Agronomy and Horticulture University of Nebraska‐Lincoln Lincoln NE 68583 USA
  4. Department of Biochemistry Beadle Center, University of Nebraska‐Lincoln Lincoln NE 68588 USA, Center for Plant Science Innovation University of Nebraska‐Lincoln Lincoln NE 68588 USA, Institute of Plant Genetics Polish Academy of Sciences 60‐479 Poznań Poland

Summary Photoprotection against excess light via nonphotochemical quenching (NPQ) is indispensable for plant survival. However, slow NPQ relaxation under low light conditions can decrease yield of field‐grown crops up to 40%. Using semi‐high‐throughput assay, we quantified the kinetics of NPQ and photosystem II operating efficiency (ΦPSII) in a replicated field trial of more than 700 maize ( Zea mays ) genotypes across 2 yr. Parametrized kinetics data were used to conduct genome‐wide association studies. For six candidate genes involved in NPQ and ΦPSII kinetics in maize the loss of function alleles of orthologous genes in Arabidopsis ( Arabidopsis thaliana ) were characterized: two thioredoxin genes, and genes encoding a transporter in the chloroplast envelope, an initiator of chloroplast movement, a putative regulator of cell elongation and stomatal patterning, and a protein involved in plant energy homeostasis. Since maize and Arabidopsis are distantly related, we propose that genes involved in photoprotection and PSII function are conserved across vascular plants. The genes and naturally occurring functional alleles identified here considerably expand the toolbox to achieving a sustainable increase in crop productivity.

Research Organization:
Univ. of Nebraska, Lincoln, NE (United States)
Sponsoring Organization:
National Science Foundation (NSF); US Dept. of Agriculture (USDA); USDOE; USDOE Office of Science (SC)
Grant/Contract Number:
SC0020355
OSTI ID:
1974636
Journal Information:
New Phytologist, Journal Name: New Phytologist Journal Issue: 3 Vol. 239; ISSN 0028-646X
Publisher:
Wiley-BlackwellCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (61)

Genome‐wide analysis and transcriptional regulation of the typical and atypical thioredoxins in Arabidopsis thaliana journal October 2021
A Genome‐Wide Association Study of Non‐Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana journal May 2019
Thioredoxin targets of the plant chloroplast lumen and their implications for plastid function journal January 2010
Non-Photochemical Fluorescence Quenching in Contrasting Plant Species and Environments book January 2014
Relationships among violaxanthin deepoxidation, thylakoid membrane conformation, and nonphotochemical chlorophyll fluorescence quenching in leaves of cotton (Gossypium hirsutum L.) journal March 1994
A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species journal June 1980
M-type thioredoxins are involved in the xanthophyll cycle and proton motive force to alter NPQ under low-light conditions in Arabidopsis journal October 2017
The PSI family of nuclear proteins is required for growth in arabidopsis journal July 2014
Improved photosynthetic characteristics correlated with enhanced biomass in a heterotic F1 hybrid of maize (Zea mays L.) journal February 2021
Studies on the light and dark interconversions of leaf xanthophylls journal April 1962
Carotenoids and photoprotection in plants: A role for the xanthophyll zeaxanthin journal October 1990
The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence journal January 1989
The role of the PsbS protein in the protection of photosystems I and II against high light in Arabidopsis thaliana journal December 2012
rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated tool for Genome-Wide Association Study journal March 2021
A pigment-binding protein essential for regulation of photosynthetic light harvesting journal January 2000
Groundwater depletion embedded in international food trade journal March 2017
Recent patterns of crop yield growth and stagnation journal January 2012
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness journal December 2005
Reduced North American terrestrial primary productivity linked to anomalous Arctic warming journal July 2017
Stimulating photosynthetic processes increases productivity and water-use efficiency in the field journal August 2020
Molecular distinction in genetic regulation of nonphotochemical quenching in rice journal July 2011
Temperature increase reduces global yields of major crops in four independent estimates journal August 2017
Integral membrane proteins of the chloroplast envelope: Identification and subcellular localization of new transporters journal August 2002
OEP37 Is a New Member of the Chloroplast Outer Membrane Ion Channels journal June 2006
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses journal September 2007
Association mapping across a multitude of traits collected in diverse environments in maize journal August 2022
Gas exchange measurements, what can they tell us about the underlying limitations to photosynthesis? Procedures and sources of error journal September 2003
The slow reversibility of photosystem II thermal energy dissipation on transfer from high to low light may cause large losses in carbon gain by crop canopies: a theoretical analysis journal May 2004
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions journal July 2017
Genetic basis of photosynthetic responses to cold in two locally adapted populations of Arabidopsis thaliana journal December 2017
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times journal April 2017
The Mechanism of Non-Photochemical Quenching in Plants: Localization and Driving Forces journal December 2020
Light-induced displacement of PLASTID MOVEMENT IMPAIRED1 precedes light-dependent chloroplast movements journal April 2022
A Plant-Specific Protein Essential for Blue-Light-Induced Chloroplast Movements journal August 2005
A Small Family of Chloroplast Atypical Thioredoxins       journal December 2008
Quantitative Genetic Analysis of Thermal Dissipation in Arabidopsis journal April 2009
Non-Photochemical Quenching. A Response to Excess Light Energy journal April 2001
Insights into the Maize Pan-Genome and Pan-Transcriptome journal January 2014
Fitting photosynthetic carbon dioxide response curves for C 3 leaves journal September 2007
The photoprotective protein PsbS exerts control over CO2 assimilation rate in fluctuating light in rice: Photoprotection and CO2 assimilation in rice journal June 2012
Closing in on maximum yield of chlorophyll fluorescence using a single multiphase flash of sub-saturating intensity: Fm using a single multiphase flash journal May 2013
Multilevel regulation of non‐photochemical quenching and state transitions by chloroplast NADPH‐dependent thioredoxin reductase journal February 2019
A common resequencing‐based genetic marker data set for global maize diversity journal February 2023
Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana journal August 2003
Greater Sensitivity to Drought Accompanies Maize Yield Increase in the U.S. Midwest journal May 2014
Improving photosynthesis and crop productivity by accelerating recovery from photoprotection journal November 2016
Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field journal January 2019
Soybean photosynthesis and crop yield are improved by accelerating recovery from photoprotection journal August 2022
Genome-wide association analysis of stalk biomass and anatomical traits in maize journal January 2019
Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies journal February 2016
Mapping in Structured Populations by Resample Model Averaging journal August 2009
Fitting Linear Mixed-Effects Models Using lme4 journal January 2015
Genetic Diversity of a Maize Association Population with Restricted Phenology journal January 2011
The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis journal September 2016
Genetic Architecture of Natural Variation in Rice Nonphotochemical Quenching Capacity Revealed by Genome-Wide Association Study journal October 2017
Redox Regulation of Monodehydroascorbate Reductase by Thioredoxin y in Plastids Revealed in the Context of Water Stress journal December 2018
Characterization and Functional Divergence of a Novel DUF668 Gene Family in Rice Based on Comprehensive Expression Patterns journal November 2019
Is Photoprotection of PSII One of the Key Mechanisms for Drought Tolerance in Maize? journal December 2021
Identification of Genomic Loci Associated with the Photochemical Reflectance Index by Genome‐Wide Association Study in Soybean journal July 2016
Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel journal June 2019
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w journal April 2012