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Title: Polytypism in semi-disordered lizardite and amesite by low-dose HAADF-STEM

Journal Article · · American Mineralogist
 [1];  [1];  [1];  [2]
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Energy Geoscience Division
  2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Energy Geoscience Division; Univ. of California, Berkeley, CA (United States)

Serpentine minerals exert important controls on the physical properties of ultramafic rocks and have the potential to influence deformation phenomena in fault zones and to control the release of water in subducted slabs. Sheet serpentine generally, and lizardite and amesite specifically, can adopt alternative crystallographic stacking arrangements called polytypes. Polytypism has been extensively studied in fully ordered crystals, but it remains largely enigmatic in the more common semi-disordered crystals that in long-range analyses such as X-ray diffraction only exhibit random combinations of 0b and ±1/3b interlayer shifts. To date, atomic-resolution imaging to identify locally ordered polytypes has been precluded by the beam-sensitive nature of this hydrous magnesium silicate mineral. Here, in this study, we employed low-dose high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) to study the polytypic structure of semi-disordered lizardite and amesite. Because the electron dose was as low as ~6000 e–/Å2, it was possible to directly resolve oxygen atomic columns and all the cations with a resolution of ~1 Å and reveal the short-range order. For lizardite, we identified long-period non-standard polytypes, including examples with 3, 4, 8, and 9 layers stemming from the ordering of the octahedral tilt along the a-axis. For amesite, we found short-range ordered polytypes with periodicities of up to 42 Å stemming from the ordering of interlayer shifts along the b-axis. The resolution was sufficient to determine the relative abundance of 6R2, 6R1, 2H1, and 2H2 polytypes in amesite to be 46.1, 29.6, 7.7, and 1.9%, respectively. This is contrary to the expectation that the most common form of amesite is the 2H2 polytype, which may be more likely to form macroscopic crystals suitable for conventional X-ray diffraction-based studies. We conclude that HAADF-STEM methods open the way for the characterization of beam-sensitive minerals and to resolve the structural details of less well-ordered (but possibly more abundant) minerals at a unit-cell scale.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division; USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1963039
Journal Information:
American Mineralogist, Journal Name: American Mineralogist Journal Issue: 2 Vol. 107; ISSN 0003-004X
Publisher:
Mineralogical Society of AmericaCopyright Statement
Country of Publication:
United States
Language:
English

References (59)

Computer simulations of cations order-disorder in 2:1 dioctahedral phyllosilicates using cation-exchange potentials and monte carlo methods journal May 2014
Polysomatism, polytypism, defect microstructures, and reaction mechanisms in regularly and randomly interstratified serpentine and chlorite journal January 1994
Influence of stacking faults on the spiral growth of polytype structures in mica journal November 1982
A survey of the phenomenon of polytypism in crystals journal October 1991
Conditions and reasons for incoherent imaging in STEM journal June 1996
Palaeoclimatic interpretation of clay minerals in marine deposits: an outlook from the continental origin journal March 2000
Revisiting building block ordering of long-period stacking ordered structures in Mg–Y–Al alloys journal June 2018
Chromium-bearing clays in altered ophiolitic rocks from Crommyonia (Soussaki) volcanic area, Attica, Greece journal September 2018
Clay minerals: Precise markers of the spatial and temporal variability of the biogeochemical soil environment journal October 2008
Structural defects in MAX phases and their derivative MXenes: A look forward journal February 2020
Quantitative analysis of image contrast in phase contrast STEM for low dose imaging journal September 2010
Origin of atomic displacement in HAADF image of the tilted specimen journal November 2017
K-space Navigation for Accurate High-angle Tilting and Control of the TEAM Sample Stage journal July 2009
Operation of TEAM I in a User Environment at NCEM journal July 2012
Atomic Structure, Defects, and Stacking of Clay Particles by Low-Dose, High Resolution (Cryo)-TEM journal August 2018
Structure of Hydrated Kaolinite Edge Surfaces: DFT Results and Further Development of the ClayFF Classical Force Field with Metal–O–H Angle Bending Terms journal March 2019
A General Database for Main Group Thermochemistry, Kinetics, and Noncovalent Interactions − Assessment of Common and Reparameterized ( meta -)GGA Density Functionals journal November 2009
Molecular Models of Hydroxide, Oxyhydroxide, and Clay Phases and the Development of a General Force Field journal January 2004
An ab Initio and Classical Molecular Dynamics Investigation of the Structural and Vibrational Properties of Talc and Pyrophyllite journal August 2007
A unified formulation of the constant temperature molecular dynamics methods journal July 1984
A smooth particle mesh Ewald method journal November 1995
A sub-sampled approach to extremely low-dose STEM journal January 2018
Subsampled STEM-ptychography journal July 2018
Ion exchange selectivity in clay is controlled by nanoscale chemical–mechanical coupling journal October 2019
A family of variable-metric methods derived by variational means journal January 1970
Conditioning of quasi-Newton methods for function minimization journal September 1970
A new approach to variable metric algorithms journal March 1970
Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules journal July 1967
Canonical dynamics: Equilibrium phase-space distributions journal March 1985
Generalized Gradient Approximation Made Simple journal October 1996
Kaolin polytypes revisited ab initio journal March 2008
The crystal structure of amesite and its thermal decomposition journal November 1951
The crystal structure of amesite journal May 1962
Growth spirals and complex polytypism in micas. I. Polytypic structure generation journal May 1975
Major Shifts in Climate and Life May Rest on Feats of Clay journal August 2005
Chromium-containing muscovite: crystal chemistry and XANES spectroscopy [Chromium-containing muscovite: crystal chemistry and XANES spectroscopy] journal March 2001
Order-disorder in clay mineral structures journal March 2001
High-angle annular dark field scanning transmission electron microscopic (HAADF-STEM) study of Fe-rich 7 Å–14 Å interstratified minerals from a hydrothermal deposit journal September 2016
A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy journal October 2017
Coexistence of two polytypic groups in cronstedtite from Lostwithiel, England journal August 2002
Polytypism of Trioctahedral 1:1 Layer Silicates journal January 1969
Cation Ordering Pattern in Amesite journal January 1979
X-ray Diffraction Identification of the Polytypes of Mica, Serpentine, and Chlorite journal January 1988
Refinement of an Amesite-2H1 Polytype from Postmasburg, South Africa journal January 1997
Stacking faults with 180° layer rotation in celadonite, an Fe- and Mg-rich dioctahedral mica journal December 2008
Structural Change in Celadonite and Cis-Vacant Illite by Electron Radiation in TEM journal August 2010
First principles methods using CASTEP journal January 2005
Serpentinite: What, Why, Where? journal April 2013
Derivation and identification of nonstandard serpentine polytypes journal December 1995
Complex polytypism; relationships between serpentine structural characteristics and deformation journal December 1995
Ordering of the stacking sequence in cookeite with increasing pressure; an HRTEM study journal February 1996
Crystal structure refinement of aluminian lizardite-2H2 journal October 1997
Direct identification of the six polytypes of chlorite characterized by semi-random stacking journal August 1998
Conversion of serpentine to smectite under hydrothermal condition: Implication for solid-state transformation journal February 2018
Identification of interstratified mica and pyrophyllite monolayers within chlorite using advanced scanning/transmission electron microscopy journal October 2019
Stacking structures in pyrophyllite revealed by high-resolution transmission electron microscopy (HRTEM) journal August 2006
Mica Crystal Chemistry and the Influence of Pressure, Temperature, and Solid Solution on Atomistic Models journal January 2002
Serpentines Close-Up and Intimate: An HRTEM View journal June 2004
Growth spirals and complex polytypism in micas. II. Occurrence frequencies in synthetic species journal January 1986