DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Transcriptomic differences noted in Glaesserella parasuis between growth in broth and on agar

Journal Article · · PLoS ONE
ORCiD logo [1];  [1];  [2];  [2]
  1. US Department of Agriculture (USDA), Ames, IA (United States). Agricultural Research Service (ARS); Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN (United States)
  2. US Department of Agriculture (USDA), Ames, IA (United States). Agricultural Research Service (ARS)

Glaesserella parasuis is the cause of Gla¨sser’s disease in pigs and is a significant contributor to post-weaning mortality in the swine industry. Prevention of G. parasuis disease relies primarily on bacterin vaccines, which have shown good homologous protection and variable heterologous protection. Bacterin production involves large scale growth of the bacteria and proteins produced during the proliferation phase of production become important antigens that stimulate the immune response. In order to evaluate genes activated during G. parasuis growth on different media substrates, the transcriptome of broth and agar grown G. parasuis strain 29755 were sequenced and compared. The transcription of most purported virulence genes were comparable between broth and agar grown G. parasuis; however, four virulence-associated genes, including ompA and vapD, had elevated expression under agar growth, while six virulence-associate genes had elevated expression during broth growth, including several protease genes. Additionally, there were metabolic shifts toward increased protein and lipid production and increased cellular division in broth grown G. parasuis. The results contribute to the understanding of how growth substrate alters gene transcription and protein expression, which may impact vaccine efficacy if immunogens important to the protective immune response are not produced under specific in vitro conditions. While the results of this work are unable to fully elucidate which growth medium presents a transcriptome more representative of in vivo samples or best suited for bacterin production, it forms a foundation that can be used for future comparisons and provides a better understanding of the metabolic differences in broth and agar grown bacteria.

Research Organization:
Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC); U.S. Department of Agriculture (USDA)
Grant/Contract Number:
SC0014664
OSTI ID:
1904877
Journal Information:
PLoS ONE, Vol. 14, Issue 8; ISSN 1932-6203
Publisher:
Public Library of ScienceCopyright Statement
Country of Publication:
United States
Language:
English

References (25)

Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates journal November 2018
Choice of Bacterial Growth Medium Alters the Transcriptome and Phenotype of Salmonella enterica Serovar Typhimurium journal May 2013
Metatranscriptomics reveals metabolic adaptation and induction of virulence factors by Haemophilus parasuis during lung infection journal September 2015
The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis journal January 2014
Map-Based Comparative Genomic Analysis of Virulent Haemophilus Parasuis Serovars 4 and 5 journal January 2015
Soluble Expression of OmpA from Haemophilus parasuis in Escherichia coli and Its Protective Effects in the Mouse Model of Infection journal September 2012
Genomic Characterization of Haemophilus parasuis SH0165, a Highly Virulent Strain of Serovar 5 Prevalent in China journal May 2011
HTSeq--a Python framework to work with high-throughput sequencing data journal September 2014
The COG database: a tool for genome-scale analysis of protein functions and evolution journal January 2000
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome journal January 2009
The Sequence Alignment/Map format and SAMtools journal June 2009
The OmpA family of proteins: Roles in bacterial pathogenesis and immunity journal May 2013
Virulence and Draft Genome Sequence Overview of Multiple Strains of the Swine Pathogen Haemophilus parasuis journal August 2014
Comparison between Haemophilus parasuis infection in colostrums-deprived and sow-reared piglets journal October 2004
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 journal December 2014
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads journal June 2014
The OmpA family of proteins: Roles in bacterial pathogenesis and immunity journal May 2013
The COG database: a tool for genome-scale analysis of protein functions and evolution journal January 2000
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads journal June 2014
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 journal December 2014
Metatranscriptomics reveals metabolic adaptation and induction of virulence factors by Haemophilus parasuis during lung infection journal September 2015
Genomic Characterization of Haemophilus parasuis SH0165, a Highly Virulent Strain of Serovar 5 Prevalent in China journal May 2011
Virulence and Draft Genome Sequence Overview of Multiple Strains of the Swine Pathogen Haemophilus parasuis journal August 2014
Soluble Expression of OmpA from Haemophilus parasuis in Escherichia coli and Its Protective Effects in the Mouse Model of Infection journal September 2012
Map-Based Comparative Genomic Analysis of Virulent Haemophilus Parasuis Serovars 4 and 5 journal January 2015