DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Structural transitions in the GTP cap visualized by cryo-electron microscopy of catalytically inactive microtubules

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [3]; ORCiD logo [4]; ORCiD logo [4]; ORCiD logo [5]; ORCiD logo [1];  [6]; ORCiD logo [4]
  1. Univ. of California, Berkeley, CA (United States)
  2. The Francis Crick Institute, London (United Kingdom)
  3. The Francis Crick Institute, London (United Kingdom); Barcelona Institute of Science and Technology (BIST) (Spain)
  4. Univ. of California, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. Barcelona Institute of Science and Technology (BIST) (Spain)
  6. The Francis Crick Institute, London (United Kingdom); Barcelona Institute of Science and Technology (BIST) (Spain); Catalan Institution for Research and Advanced Studies (ICREA) (Spain)

Microtubules (MTs) are nonequilibrium polymers that switch between states of growth and shrinkage. This property is critical for their function and is a consequence of GTP hydrolysis in the MT. The structure of the stable GTP part of the MT (the GTP cap) has previously been inferred from MTs polymerized with nonhydrolyzable GTP analogs. Here, we report high-resolution structures of MTs truly containing GTP, polymerized from mutated, hydrolysis-deficient tubulins. We find that GTP-MTs have an “expanded lattice” and a “closed seam,” structural characteristics possibly responsible for stabilizing the GTP cap. These results provide insight into the structural transitions at growing MT ends, furthering our understanding of the bistable nature of MTs.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
Cancer Research UK; European Research Council (ERC); National Institutes of Health (NIH); National Science Foundation (NSF); UK Medical Research Council; USDOE Office of Science (SC), Basic Energy Sciences (BES); Wellcome Trust
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1897632
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Issue: 2 Vol. 119; ISSN 0027-8424
Publisher:
National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English

References (43)

Microtubules switch occasionally into unfavorable configurations during elongation journal May 2000
The minimum GTP cap required to stabilize microtubules journal December 1994
Microtubule Simulations Provide Insight into the Molecular Mechanism Underlying Dynamic Instability journal June 2020
EBs Recognize a Nucleotide-Dependent Structural Cap at Growing Microtubule Ends journal April 2012
High-Resolution Microtubule Structures Reveal the Structural Transitions in αβ-Tubulin upon GTP Hydrolysis journal May 2014
Mechanistic Origin of Microtubule Dynamic Instability and Its Modulation by EB Proteins journal August 2015
Estimating the Microtubule GTP Cap Size In Vivo journal September 2012
Self-Organization of Minimal Anaphase Spindle Midzone Bundles journal July 2019
Insights into the Distinct Mechanisms of Action of Taxane and Non-Taxane Microtubule Stabilizers from Cryo-EM Structures journal March 2017
FREALIGN: High-resolution refinement of single particle structures journal January 2007
CTFFIND4: Fast and accurate defocus estimation from electron micrographs journal November 2015
A new protocol to accurately determine microtubule lattice seam location journal November 2015
A microtubule RELION-based pipeline for cryo-EM image processing journal January 2020
Dynamic instability of microtubule growth journal November 1984
A structural change in the kinesin motor protein that drives motility journal December 1999
Reconstitution of a microtubule plus-end tracking system in vitro journal December 2007
Ectopic A-lattice seams destabilize microtubules journal January 2014
Fiji: an open-source platform for biological-image analysis journal June 2012
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy journal February 2017
Growth, fluctuation and switching at microtubule plus ends journal June 2009
Microtubule dynamics: an interplay of biochemistry and mechanics journal April 2018
Software tools for automated transmission electron microscopy journal May 2019
The role of tubulin–tubulin lattice contacts in the mechanism of microtubule dynamic instability journal July 2018
Microtubule structure by cryo-EM: snapshots of dynamic instability journal October 2018
Microtubule plus-end tracking by CLIP-170 requires EB1 journal January 2009
GTP S microtubules mimic the growing microtubule end structure recognized by end-binding proteins (EBs) journal February 2011
Separating the effects of nucleotide and EB binding on microtubule structure journal June 2018
Structure and Dynamics of Single-isoform Recombinant Neuronal Human Tubulin journal April 2016
On the surface lattice of microtubules: helix starts, protofilament number, seam, and handedness. journal March 1986
Structural changes accompanying GTP hydrolysis in microtubules: information from a slowly hydrolyzable analogue guanylyl-(alpha,beta)- methylene-diphosphonate journal January 1995
Mammalian end binding proteins control persistent microtubule growth journal March 2009
CLIP-170 tracks growing microtubule ends by dynamically recognizing composite EB1/tubulin-binding sites journal December 2008
Microtubules: Evidence for 13 Protofilaments journal November 1973
A microtubule bestiary: structural diversity in tubulin polymers journal November 2017
Tubulin isoform composition tunes microtubule dynamics journal December 2017
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
New tools for the analysis and validation of cryo-EM maps and atomic models journal September 2018
Arrangement of subunits in flagellar microtubules journal May 1974
Spatial positioning of EB family proteins at microtubule tips involves distinct nucleotide-dependent binding properties journal September 2018
The size of the EB cap determines instantaneous microtubule stability journal April 2016
New tools for automated high-resolution cryo-EM structure determination in RELION-3 journal November 2018
Structural model for differential cap maturation at growing microtubule ends journal March 2020
The speed of GTP hydrolysis determines GTP cap size and controls microtubule stability journal February 2020

Similar Records

Unveiling the catalytic mechanism of GTP hydrolysis in microtubules
Journal Article · 2023 · Proceedings of the National Academy of Sciences of the United States of America · OSTI ID:1986572

Structural differences between yeast and mammalian microtubules revealed by cryo-EM
Journal Article · 2017 · Journal of Cell Biology · OSTI ID:1393251

Direct evidence for GTP and GDP-P sub i intermediates in microtubule assembly
Journal Article · 1990 · Biochemistry; (USA) · OSTI ID:5920733