Structural studies of the coiled-coil domain of TRIM75 reveal a tetramer architecture facilitating its E3 ligase complex

Lou, Xiaohua; Ma, Binbin; Zhuang, Yuan; Xiao, Xiang; Minze, Laurie J.; Xing, Junji; Zhang, Zhiqiang; Li, Xian C.

doi:10.1016/j.csbj.2022.08.069

Title: Structural studies of the coiled-coil domain of TRIM75 reveal a tetramer architecture facilitating its E3 ligase complex

Journal Article · 01 January 2022 · Computational and Structural Biotechnology Journal

DOI: https://doi.org/10.1016/j.csbj.2022.08.069 · OSTI ID:1887323

Lou, Xiaohua; Ma, Binbin; Zhuang, Yuan; Xiao, Xiang; Minze, Laurie J.; Xing, Junji; Zhang, Zhiqiang; Li, Xian C.

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Sponsoring Organization:: USDOE

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 1887323

Journal Information:: Computational and Structural Biotechnology Journal, Journal Name: Computational and Structural Biotechnology Journal Journal Issue: C Vol. 20; ISSN 2001-0370

Publisher:: ElsevierCopyright Statement

Country of Publication:: Sweden

Language:: English

References (39)

Structure and catalytic activation of the TRIM23 RING E3 ubiquitin ligase: DAWIDZIAK et al. Dawidziak, Daria M.; Sanchez, Jacint G.; Wagner, Jonathan M. Proteins: Structure, Function, and Bioinformatics, Vol. 85, Issue 10 https://doi.org/10.1002/prot.25348	journal	July 2017
The B-box 1 dimer of human promyelocytic leukemia protein Huang, Shu-Yu; Naik, Mandar T.; Chang, Chi-Fon Journal of Biomolecular NMR, Vol. 60, Issue 4 https://doi.org/10.1007/s10858-014-9869-4	journal	October 2014
RING-type E3 ligases: Master manipulators of E2 ubiquitin-conjugating enzymes and ubiquitination Metzger, Meredith B.; Pruneda, Jonathan N.; Klevit, Rachel E. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1843, Issue 1 https://doi.org/10.1016/j.bbamcr.2013.05.026	journal	January 2014
Types of Ubiquitin Ligases Morreale, Francesca Ester; Walden, Helen Cell, Vol. 165, Issue 1 https://doi.org/10.1016/j.cell.2016.03.003	journal	March 2016
Influenza A Virus NS1 Targets the Ubiquitin Ligase TRIM25 to Evade Recognition by the Host Viral RNA Sensor RIG-I Gack, Michaela Ulrike; Albrecht, Randy Allen; Urano, Tomohiko Cell Host & Microbe, Vol. 5, Issue 5 https://doi.org/10.1016/j.chom.2009.04.006	journal	May 2009
A Dissection of Oligomerization by the TRIM28 Tripartite Motif and the Interaction with Members of the Krab-ZFP Family Sun, Yunyuan; Keown, Jeremy R.; Black, Moyra M. Journal of Molecular Biology, Vol. 431, Issue 14 https://doi.org/10.1016/j.jmb.2019.05.002	journal	June 2019
TRIM Family Proteins: Roles in Autophagy, Immunity, and Carcinogenesis Hatakeyama, Shigetsugu Trends in Biochemical Sciences, Vol. 42, Issue 4 https://doi.org/10.1016/j.tibs.2017.01.002	journal	April 2017
Characterization of TRIM5α trimerization and its contribution to human immunodeficiency virus capsid binding Javanbakht, Hassan; Yuan, Wen; Yeung, Darwin F. Virology, Vol. 353, Issue 1 https://doi.org/10.1016/j.virol.2006.05.017	journal	September 2006
Structural Analysis of B-Box 2 from MuRF1: Identification of a Novel Self-Association Pattern in a RING-like Fold^†^‡ Mrosek, Michael; Meier, Sebastian; Ucurum-Fotiadis, Zöhre Biochemistry, Vol. 47, Issue 40 https://doi.org/10.1021/bi800733z	journal	October 2008
Structural insights into the TRIM family of ubiquitin E3 ligases Li, Yang; Wu, Han; Wu, Wei Cell Research, Vol. 24, Issue 6 https://doi.org/10.1038/cr.2014.46	journal	April 2014
Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis Plechanovová, Anna; Jaffray, Ellis G.; Tatham, Michael H. Nature, Vol. 489, Issue 7414 https://doi.org/10.1038/nature11376	journal	July 2012
TRIM proteins and cancer Hatakeyama, Shigetsugu Nature Reviews Cancer, Vol. 11, Issue 11 https://doi.org/10.1038/nrc3139	journal	October 2011
TRIM family proteins and their emerging roles in innate immunity Ozato, Keiko; Shin, Dong-Mi; Chang, Tsung-Hsien Nature Reviews Immunology, Vol. 8, Issue 11 https://doi.org/10.1038/nri2413	journal	November 2008
Structural insights into the catalysis and regulation of E3 ubiquitin ligases Buetow, Lori; Huang, Danny T. Nature Reviews Molecular Cell Biology, Vol. 17, Issue 10 https://doi.org/10.1038/nrm.2016.91	journal	August 2016
New insights into ubiquitin E3 ligase mechanism Berndsen, Christopher E.; Wolberger, Cynthia Nature Structural & Molecular Biology, Vol. 21, Issue 4 https://doi.org/10.1038/nsmb.2780	journal	April 2014
Molecular mechanism of influenza A NS1-mediated TRIM25 recognition and inhibition Koliopoulos, Marios G.; Lethier, Mathilde; van der Veen, Annemarthe G. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-04214-8	journal	May 2018
A tri-ionic anchor mechanism drives Ube2N-specific recruitment and K63-chain ubiquitination in TRIM ligases Kiss, Leo; Zeng, Jingwei; Dickson, Claire F. Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-12388-y	journal	October 2019
Crystal structure of TRIM20 C-terminal coiled-coil/B30.2 fragment: implications for the recognition of higher order oligomers Weinert, Christopher; Morger, Damien; Djekic, Aleksandra Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep10819	journal	June 2015
The tripartite motif coiled-coil is an elongated antiparallel hairpin dimer Sanchez, J. G.; Okreglicka, K.; Chandrasekaran, V. Proceedings of the National Academy of Sciences, Vol. 111, Issue 7 https://doi.org/10.1073/pnas.1318962111	journal	February 2014
Structural studies of postentry restriction factors reveal antiparallel dimers that enable avid binding to the HIV-1 capsid lattice Goldstone, David C.; Walker, Philip A.; Calder, Lesley J. Proceedings of the National Academy of Sciences, Vol. 111, Issue 26 https://doi.org/10.1073/pnas.1402448111	journal	June 2014
E3 ubiquitin-protein ligase TRIM21-mediated lysine capture by UBE2E1 reveals substrate-targeting mode of a ubiquitin-conjugating E2 Anandapadamanaban, Madhanagopal; Kyriakidis, Nikolaos C.; Csizmók, Veronika Journal of Biological Chemistry, Vol. 294, Issue 30 https://doi.org/10.1074/jbc.RA119.008485	journal	June 2019
MEGA11: Molecular Evolutionary Genetics Analysis Version 11 Tamura, Koichiro; Stecher, Glen; Kumar, Sudhir Molecular Biology and Evolution, Vol. 38, Issue 7 https://doi.org/10.1093/molbev/msab120	journal	April 2021
Inhibition of SUMO-independent PML oligomerization by the human cytomegalovirus IE1 protein Kang, Heejung; Kim, Eui Tae; Lee, Hye-Ra Journal of General Virology, Vol. 87, Issue 8 https://doi.org/10.1099/vir.0.81787-0	journal	August 2006
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007
Coot model-building tools for molecular graphics Emsley, Paul; Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132 https://doi.org/10.1107/S0907444904019158	journal	November 2004
Overview of the CCP 4 suite and current developments Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D. Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444910045749	journal	March 2011
iMOSFLM : a new graphical interface for diffraction-image processing with MOSFLM Battye, T. Geoff G.; Kontogiannis, Luke; Johnson, Owen Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444910048675	journal	March 2011
REFMAC 5 for the refinement of macromolecular crystal structures Murshudov, Garib N.; Skubák, Pavol; Lebedev, Andrey A. Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444911001314	journal	March 2011
The RING domain of TRIM69 promotes higher-order assembly Keown, Jeremy R.; Yang, Joy; Black, Moyra M. Acta Crystallographica Section D Structural Biology, Vol. 76, Issue 10 https://doi.org/10.1107/S2059798320010499	journal	September 2020
Proteasome-Independent Functions of Ubiquitin in Endocytosis and Signaling Mukhopadhyay, D.; Riezman, H. Science, Vol. 315, Issue 5809 https://doi.org/10.1126/science.1127085	journal	January 2007
The TRIM5α B-Box 2 Domain Promotes Cooperative Binding to the Retroviral Capsid by Mediating Higher-Order Self-Association Li, Xing; Sodroski, Joseph Journal of Virology, Vol. 82, Issue 23 https://doi.org/10.1128/JVI.01548-08	journal	September 2008
The Ubiquitin Code Komander, David; Rape, Michael Annual Review of Biochemistry, Vol. 81, Issue 1 https://doi.org/10.1146/annurev-biochem-060310-170328	journal	July 2012
TRIM Proteins and Their Roles in Antiviral Host Defenses van Gent, Michiel; Sparrer, Konstantin M. J.; Gack, Michaela U. Annual Review of Virology, Vol. 5, Issue 1 https://doi.org/10.1146/annurev-virology-092917-043323	journal	September 2018
The Ubiquitin-Proteasome Proteolytic Pathway: Destruction for the Sake of Construction Glickman, Michael H.; Ciechanover, Aaron Physiological Reviews, Vol. 82, Issue 2 https://doi.org/10.1152/physrev.00027.2001	journal	April 2002
Emerging Role of TRIM Family Proteins in Cardiovascular Disease Zhang, Jing-rui; Li, Xin-xin; Hu, Wan-ning Cardiology, Vol. 145, Issue 6 https://doi.org/10.1159/000506150	journal	January 2020
Involvement of the rfp tripartite motif in protein-protein interactions and subcellular distribution Cao, T.; Borden, K. L.; Freemont, P. S. Journal of Cell Science, Vol. 110, Issue 14 https://doi.org/10.1242/jcs.110.14.1563	journal	July 1997
Crystal Structure of Cytomegalovirus IE1 Protein Reveals Targeting of TRIM Family Member PML via Coiled-Coil Interactions Scherer, Myriam; Klingl, Stefan; Sevvana, Madhumati PLoS Pathogens, Vol. 10, Issue 11 https://doi.org/10.1371/journal.ppat.1004512	journal	November 2014
Functional role of TRIM E3 ligase oligomerization and regulation of catalytic activity Koliopoulos, Marios G.; Esposito, Diego; Christodoulou, Evangelos The EMBO Journal, Vol. 35, Issue 11 https://doi.org/10.15252/embj.201593741	journal	May 2016
Intracellular antibody signalling is regulated by phosphorylation of the Fc receptor TRIM21 Dickson, Claire; Fletcher, Adam J.; Vaysburd, Marina eLife, Vol. 7 https://doi.org/10.7554/eLife.32660	journal	April 2018

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