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Title: Coarse-Grained Density Functional Theory Predictions via Deep Kernel Learning

Journal Article · · Journal of Chemical Theory and Computation

Scalable electronic predictions are critical for soft materials design. Recently, the Electronic Coarse-Graining (ECG) method was introduced to renormalize all-atom quantum chemical (QC) predictions to coarse-grained (CG) resolutions using deep neural networks (DNNs). While DNNs can learn complex representations that prove challenging for kernel-based methods, they are susceptible to overfitting and the overconfidence of uncertainty estimations. Here, we develop ECG within a GPU-accelerated Deep Kernel Learning (DKL) framework to enable CG QC predictions using range-separated hybrid density functional theory (DFT), obtaining a 107 speedup relative to naive all-atom QC. By treating the predicted electronic properties as random Gaussian Processes, DKL incorporates CG mapping degeneracy by learning the distribution of electronic energies as a function of CG configuration. DKL-ECG accurately reproduces molecular orbital energies from range-separated DFT while facilitating efficient training via active learning using the uncertainties provided by DKL. Further, we show that while active learning algorithms enable efficient sampling of a more diverse configurational space relative to random sampling, all explored query methods exhibit comparable performance for the examined system. We attribute this result to the significant overlap of the feature space and output property distributions across multiple temperatures.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC); USDOE Laboratory Directed Research and Development (LDRD) Program
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1880131
Journal Information:
Journal of Chemical Theory and Computation, Journal Name: Journal of Chemical Theory and Computation Journal Issue: 2 Vol. 18; ISSN 1549-9618
Publisher:
American Chemical SocietyCopyright Statement
Country of Publication:
United States
Language:
English

References (59)

Coarse-Graining in Polymer Simulation: From the Atomistic to the Mesoscopic Scale and Back journal September 2002
Progress in Materials, Solution Processes, and Long‐Term Stability for Large‐Area Organic Photovoltaics journal October 2020
Deriving effective mesoscale potentials from atomistic simulations: Mesoscale Potentials from Atomistic Simulations journal August 2003
Chemically specific coarse‐graining of polymers: Methods and prospects journal October 2021
Fast Parallel Algorithms for Short-Range Molecular Dynamics journal March 1995
Gaussian Processes in Machine Learning book January 2004
Relative orientation journal January 1990
Gaussian Processes for Object Categorization journal July 2009
Active learning accelerates ab initio molecular dynamics on reactive energy surfaces journal March 2021
Active learning of linearly parametrized interatomic potentials journal December 2017
Large scale mobility calculations in PEDOT (Poly(3,4-ethylenedioxythiophene)): Backmapping the coarse-grained MARTINI morphology journal June 2020
Development of robust neural-network interatomic potential for molten salt journal March 2021
Redox Active Polymers as Soluble Nanomaterials for Energy Storage journal September 2016
Quantum Chemistry-Informed Active Learning to Accelerate the Design and Discovery of Sustainable Energy Storage Materials journal May 2020
Gaussian Process Regression for Materials and Molecules journal August 2021
Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems journal June 2020
Gaussian Process Regression for Transition State Search journal October 2018
Graph-Based Approach to Systematic Molecular Coarse-Graining journal November 2018
Machine Learning for Predicting Electron Transfer Coupling journal August 2019
Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation journal March 2020
Coarse-Graining Organic Semiconductors: The Path to Multiscale Design journal December 2020
Many-Body Coarse-Grained Interactions Using Gaussian Approximation Potentials journal November 2017
DFT Accurate Interatomic Potential for Molten NaCl from Machine Learning journal November 2020
Automated Development of Molten Salt Machine Learning Potentials: Application to LiCl journal April 2021
Efficient Multiscale Optoelectronic Prediction for Conjugated Polymers journal December 2019
Organic Electronic Materials: Recent Advances in the DFT Description of the Ground and Excited States Using Tuned Range-Separated Hybrid Functionals journal April 2014
Modeling Charge Transport in Organic Photovoltaic Materials journal November 2009
Self-Assembly Strategies for Integrating Light Harvesting and Charge Separation in Artificial Photosynthetic Systems journal December 2009
Active Learning with Support Vector Machines in the Drug Discovery Process journal February 2003
Microscopic Simulations of Charge Transport in Disordered Organic Semiconductors journal August 2011
Versatile Object-Oriented Toolkit for Coarse-Graining Applications journal November 2009
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids journal January 1996
Bulk Heterojunction Morphologies with Atomistic Resolution from Coarse-Grain Solvent Evaporation Simulations journal March 2017
A Multiscale Coarse-Graining Method for Biomolecular Systems journal February 2005
Characterization of the Solvation and Transport of the Hydrated Proton in the Perfluorosulfonic Acid Membrane Nafion journal September 2006
Hierarchical Modeling of Polystyrene: From Atomistic to Coarse-Grained Simulations journal September 2006
Deep learning journal May 2015
A universal strategy for the creation of machine learning-based atomistic force fields journal September 2017
Coarse-graining auto-encoders for molecular dynamics journal December 2019
On-the-fly active learning of interpretable Bayesian force fields for atomistic rare events journal March 2020
Machine Learning Strategy for Accelerated Design of Polymer Dielectrics journal February 2016
ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost journal January 2017
Machine learning approach for accurate backmapping of coarse-grained models to all-atom models journal January 2020
Is preservation of symmetry necessary for coarse-graining? journal January 2020
Graph neural network based coarse-grained mapping prediction journal January 2020
Molecular latent space simulators journal January 2020
Coarse-graining errors and numerical optimization using a relative entropy framework journal March 2011
Perspective: Coarse-grained models for biomolecular systems journal September 2013
Less is more: Sampling chemical space with active learning journal June 2018
The ORCA quantum chemistry program package journal June 2020
Backmapping coarse-grained macromolecules: An efficient and versatile machine learning approach journal July 2020
A microcanonical approach to temperature-transferable coarse-grained models using the relative entropy journal September 2021
A Comparison of Three Methods for Selecting Values of Input Variables in the Analysis of Output From a Computer Code journal February 2000
Visualization and analysis of atomistic simulation data with OVITO–the Open Visualization Tool journal December 2009
On representing chemical environments journal May 2013
Gaussian Approximation Potentials: The Accuracy of Quantum Mechanics, without the Electrons journal April 2010
Experimentally Driven Automated Machine-Learned Interatomic Potential for a Refractory Oxide journal April 2021
Electronic structure at coarse-grained resolutions from supervised machine learning journal March 2019
Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning journal September 2019