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Title: ALOHA: Aggregated local extrema splines for high-throughput dose–response analysis

Journal Article · · Computational Toxicology

Not Available

Sponsoring Organization:
USDOE
OSTI ID:
1869360
Journal Information:
Computational Toxicology, Journal Name: Computational Toxicology Journal Issue: C Vol. 21; ISSN 2468-1113
Publisher:
ElsevierCopyright Statement
Country of Publication:
Netherlands
Language:
English

References (37)

Recommended tests for association in 2×2 tables journal March 2009
Recommended approaches in the application of toxicogenomics to derive points of departure for chemical risk assessment journal December 2016
MCLUST: Software for Model-Based Cluster Analysis journal July 1999
Silhouettes: A graphical aid to the interpretation and validation of cluster analysis journal November 1987
The Molecular Signatures Database Hallmark Gene Set Collection journal December 2015
Bayesian curve fitting and clustering with Dirichlet process mixture models for microarray data journal June 2019
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles journal September 2005
A Fuzzy Relative of the ISODATA Process and Its Use in Detecting Compact Well-Separated Clusters journal January 1973
Well-Separated Clusters and Optimal Fuzzy Partitions journal January 1974
Model-based clustering and data transformations for gene expression data journal October 2001
Bayesian infinite mixture model based clustering of gene expression profiles journal September 2002
Clustering of time-course gene expression data using a mixed-effects model with B-splines journal March 2003
Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data journal February 2004
Bayesian mixture model based clustering of replicated microarray data journal February 2004
Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset journal May 2006
Discovering transcriptional modules by Bayesian data integration journal June 2010
Molecular signatures database (MSigDB) 3.0 journal May 2011
Bayesian correlated clustering to integrate multiple datasets journal October 2012
Bayesian consensus clustering journal August 2013
BMDExpress 2: enhanced transcriptomic dose-response analysis workflow journal October 2018
Bayesian local extremum splines journal September 2017
Incorporating New Technologies Into Toxicity Testing and Risk Assessment: Moving From 21st Century Vision to a Data-Driven Framework journal August 2013
Application of Gene Set Enrichment Analysis for Identification of Chemically-Induced, Biologically Relevant Transcriptomic Networks and Potential Utilization in Human Health Risk Assessment journal January 2017
The Power of Resolution: Contextualized Understanding of Biological Responses to Liver Injury Chemicals Using High-throughput Transcriptomics and Benchmark Concentration Modeling journal March 2019
A new look at the statistical model identification journal December 1974
Calculation of Benchmark Doses from Continuous Data journal February 1995
A new approach to analyzing gene expression time series data conference January 2002
A Data Analysis Pipeline Accounting for Artifacts in Tox21 Quantitative High-Throughput Screening Assays journal August 2015
CLEAN: CLustering Enrichment ANalysis journal July 2009
BMDExpress: a software tool for the benchmark dose analyses of genomic data journal January 2007
Clustering gene expression time series data using an infinite Gaussian process mixture model journal January 2018
Impact of Genomics Platform and Statistical Filtering on Transcriptional Benchmark Doses (BMD) and Multiple Approaches for Selection of Chemical Point of Departure (PoD) journal August 2015
A trichostatin A expression signature identified by TempO-Seq targeted whole transcriptome profiling journal May 2017
A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics journal February 2018
A Test for Differences between Treatment Means When Several Dose Levels are Compared with a Zero Dose Control journal March 1971
The Comparison of Several Dose Levels with a Zero Dose Control journal June 1972
Comparison of toxicogenomics and traditional approaches to inform mode of action and points of departure in human health risk assessment of benzo[ a ]pyrene in drinking water journal January 2015