Title: An uncharacteristically low-potential flavin governs the energy landscape of electron bifurcation

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America

Significance Nature has long been an inspiration for materials design, as it exemplifies exquisite control of both matter and energy. Electron bifurcation, a mechanism employed in biological systems to drive thermodynamically unfavorable and energetically challenging chemical reactions, is one such example. A key feature of bifurcating enzymes is the ability of a single redox cofactor to distribute a pair of electrons across two spatially separated electron transfer pathways. Here, we report on the empirical determination of both the one-electron potential and two-electron potential of the bifurcating flavin cofactor in the NADH-dependent ferredoxin-NADP + oxidoreductase I (NfnSL) enzyme. Insights arising from the defined energy landscape of this bifurcation site may underlie the design of synthetic catalysts capable of generating high-energy intermediates.

Research Organization:
National Renewable Energy Laboratory (NREL), Golden, CO (United States)
Sponsoring Organization:
US Department of Agriculture; USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division
Grant/Contract Number:
AC36-08GO28308
OSTI ID:
1854951
Report Number(s):
NREL/JA-2700-77008; e2117882119
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Issue: 12 Vol. 119; ISSN 0027-8424
Publisher:
Proceedings of the National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English

References (52)

Molecular basis of the flavin-based electron-bifurcating caffeyl-CoA reductase reaction journal February 2018
Redox bifurcations: Mechanisms and importance to life now, and at its origin: A widespread means of energy conversion in biology unfolds… journal November 2011
Novel structure and redox chemistry of the prosthetic groups of the iron-sulfur flavoprotein sulfide dehydrogenase from Pyrococcus furiosus; evidence for a [2Fe-2S] cluster with Asp(Cys)3 ligands journal August 2000
Quinone and non-quinone redox couples in Complex III journal October 2008
Energy conservation by bifurcated electron-transfer in the cytochrome-bc1 complex journal July 1996
Kinetics of the reversible inhibition of enzyme-catalysed reactions by tight-binding inhibitors journal August 1969
The protonmotive Q cycle: A general formulation journal November 1975
Metalloprotein adsorption on Au(111) and polycrystalline platinum investigated by in situ scanning tunneling microscopy with molecular and submolecular resolution journal June 1998
Oxidation-Reduction Potentials of the Triphosphopyridine Nucleotide System journal March 1959
Redox environment of the cell as viewed through the redox state of the glutathione disulfide/glutathione couple journal June 2001
Reduction midpoint potentials of bifurcating electron transfer flavoproteins book January 2019
Rapid determination of enzyme kinetics from fluorescence: Overcoming the inner filter effect journal December 2007
A three-dimensional printed cell for rapid, low-volume spectroelectrochemistry journal August 2013
Flavins in the electron bifurcation process journal April 2021
Exposing the Complex III Qo semiquinone radical journal July 2007
Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation journal February 2013
On the universal core of bioenergetics journal February 2013
The mechanism of ubihydroquinone oxidation at the Qo-site of the cytochrome bc1 complex journal November 2013
From low- to high-potential bioenergetic chains: Thermodynamic constraints of Q-cycle function journal September 2016
The role of thermodynamic features on the functional activity of electron bifurcating enzymes journal April 2021
H/D exchange mass spectrometry and statistical coupling analysis reveal a role for allostery in a ferredoxin-dependent bifurcating transhydrogenase catalytic cycle journal January 2018
Electron bifurcation journal April 2016
A new era for electron bifurcation journal December 2018
Native metals, electron bifurcation, and CO2 reduction in early biochemical evolution journal June 2018
Fixing the Q cycle journal April 2005
Electron Bifurcation: Thermodynamics and Kinetics of Two-Electron Brokering in Biological Redox Chemistry journal August 2017
Flavin-Based Electron Bifurcation, A New Mechanism of Biological Energy Coupling journal February 2018
The Q-Cycle Mechanism of the bc 1 Complex: A Biologist’s Perspective on Atomistic Studies journal January 2017
Ubiquinone Pair in the Qo Site Central to the Primary Energy Conversion Reactions of Cytochrome bc1 Complex journal December 1995
Effect of Iron-Sulfur Cluster Environment in Modulating the Thermodynamic Properties and Biological Function of Ferredoxin from Pyrococcus furiosus journal May 1998
One-Electron and Two-Electron Transfers in Electrochemistry and Homogeneous Solution Reactions journal July 2008
The Q-cycle – A Personal Perspective journal January 2004
Natural engineering principles of electron tunnelling in biological oxidation–reduction journal November 1999
Reversible redox energy coupling in electron transfer chains journal February 2004
Mechanistic insights into energy conservation by flavin-based electron bifurcation journal April 2017
The semiquinone swing in the bifurcating electron transferring flavoprotein/butyryl-CoA dehydrogenase complex from Clostridium difficile journal November 2017
On the nature of organic and inorganic centers that bifurcate electrons, coupling exergonic and endergonic oxidation–reduction reactions journal January 2018
Electron bifurcation: progress and grand challenges journal January 2019
Universal free-energy landscape produces efficient and reversible electron bifurcation journal August 2020
On the Mechanism of Quinol Oxidation in thebc1 Complex journal August 1998
Reduction of Flavodoxin by Electron Bifurcation and Sodium Ion-dependent Reoxidation by NAD + Catalyzed by Ferredoxin-NAD + Reductase (Rnf) journal April 2016
The catalytic mechanism of electron-bifurcating electron transfer flavoproteins (ETFs) involves an intermediary complex with NAD + journal December 2018
NAD(H) and NADP(H) Redox Couples and Cellular Energy Metabolism journal January 2018
Modulations of the reduction potentials of flavin‐based electron bifurcation complexes and semiquinone stabilities are key to control directional electron flow journal May 2020
Energy Conservation in Acetogenic Bacteria journal November 2003
NADP+ Reduction with Reduced Ferredoxin and NADP+ Reduction with NADH Are Coupled via an Electron-Bifurcating Enzyme Complex in Clostridium kluyveri journal July 2010
Coupled Ferredoxin and Crotonyl Coenzyme A (CoA) Reduction with NADH Catalyzed by the Butyryl-CoA Dehydrogenase/Etf Complex from Clostridium kluyveri journal November 2007
Theory of Square-Wave Voltammetry of Two-Electron Reduction with the Adsorption of Intermediate journal January 2012
NADPH-generating systems in bacteria and archaea journal July 2015
Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD+ (Rnf) as Electron Acceptors: A Historical Review journal March 2018
Electron Bifurcation and Confurcation in Methanogenesis and Reverse Methanogenesis journal June 2018
On the Natural History of Flavin-Based Electron Bifurcation journal July 2018