Plant GATA Factors: Their Biology, Phylogeny, and Phylogenomics

Schwechheimer, Claus; Schröder, Peter Michael; Blaby-Haas, Crysten E. E.

doi:10.1146/annurev-arplant-072221-092913

Title: Plant GATA Factors: Their Biology, Phylogeny, and Phylogenomics

Journal Article · 07 February 2022 · Annual Review of Plant Biology

DOI: https://doi.org/10.1146/annurev-arplant-072221-092913 · OSTI ID:1846359

^[1]; Schröder, Peter Michael ^[1];

^[2]

Technical Univ. of Munich, Freising (Germany)
Brookhaven National Lab. (BNL), Upton, NY (United States); Stony Brook Univ., NY (United States)

GATA factors are evolutionarily conserved transcription factors that are found in animals, fungi, and plants. Compared to that of animals, the size of the plant GATA family is increased. In angiosperms, four main GATA classes and seven structural subfamilies can be defined. In recent years, knowledge about the biological role and regulation of plant GATAs has substantially improved. Individual family members have been implicated in the regulation of photomorphogenic growth, chlorophyll biosynthesis, chloroplast development, photosynthesis, and stomata formation, as well as root, leaf, and flower development. In this review, we summarize the current knowledge of plant GATA factors. Using phylogenomic analysis, we trace the evolutionary origin of the GATA classes in the green lineage and examine their relationship to animal and fungal GATAs. Lastly, we speculate about a possible conservation of GATA-regulated functions across the animal, fungal, and plant kingdoms.

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Research Organization:: Brookhaven National Laboratory (BNL), Upton, NY (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: SC0012704

OSTI ID:: 1846359

Report Number(s):: BNL-222792-2022-JAAM

Journal Information:: Annual Review of Plant Biology, Journal Name: Annual Review of Plant Biology Journal Issue: 1 Vol. 73; ISSN 1543-5008

Publisher:: Annual ReviewsCopyright Statement

Country of Publication:: United States

Language:: English

References (111)

White collar-1, a central regulator of blue light responses in Neurospora, is a zinc finger protein. Ballario, P.; Vittorioso, P.; Magrelli, A. The EMBO Journal, Vol. 15, Issue 7 https://doi.org/10.1002/j.1460-2075.1996.tb00510.x	journal	April 1996
Genome-wide binding analysis of AtGNC and AtCGA1 demonstrates their cross-regulation and common and specific functions Xu, Zhenhua; Casaretto, José A.; Bi, Yong-Mei Plant Direct, Vol. 1, Issue 4 https://doi.org/10.1002/pld3.16	journal	October 2017
NIT2, the nitrogen regulatory protein of Neurospora crassa, binds upstream of nia, the tomato nitrate reductase gene, in vitro Jarai, Gabor; Truong, Hoai-Nam; Daniel-Vedele, Francoise Current Genetics, Vol. 21, Issue 1 https://doi.org/10.1007/BF00318652	journal	January 1992
Nitrogen metabolite repression in Aspergillus nidulans Arst, Herbert N.; Cove, David J. MGG Molecular & General Genetics, Vol. 126, Issue 2 https://doi.org/10.1007/BF00330988	journal	January 1973
Molecular Evolution of the GATA Family of Transcription Factors: Conservation Within the DNA-Binding Domain Lowry, Jason A.; Atchley, William R. Journal of Molecular Evolution, Vol. 50, Issue 2 https://doi.org/10.1007/s002399910012	journal	February 2000
Longitudinal patterning in roots: a GATA2–auxin interaction underlies and maintains the root transition domain Jiang, Keni; Yung, Vincent; Chiba, Taisei Planta, Vol. 247, Issue 4 https://doi.org/10.1007/s00425-017-2831-4	journal	December 2017
Towards an understanding of the structure and function of MTA1 Millard, Christopher J.; Fairall, Louise; Schwabe, John W. R. Cancer and Metastasis Reviews, Vol. 33, Issue 4 https://doi.org/10.1007/s10555-014-9513-5	journal	October 2014
Poplar GATA transcription factor PdGNC is capable of regulating chloroplast ultrastructure, photosynthesis, and vegetative growth in Arabidopsis under varying nitrogen levels An, Yi; Han, Xiao; Tang, Sha Plant Cell, Tissue and Organ Culture (PCTOC), Vol. 119, Issue 2 https://doi.org/10.1007/s11240-014-0536-y	journal	August 2014
FOG, a Multitype Zinc Finger Protein, Acts as a Cofactor for Transcription Factor GATA-1 in Erythroid and Megakaryocytic Differentiation Tsang, Alice P.; Visvader, Jane E.; Turner, C. Alexander Cell, Vol. 90, Issue 1 https://doi.org/10.1016/S0092-8674(00)80318-9	journal	July 1997
Molecular analysis of a Penicillium chrysogenum GATA factor encoding gene (sreP) exhibiting significant homology to the Ustilago maydis urbs1 gene Haas, Hubertus; Angermayr, Klaus; Stöffler, Georg Gene, Vol. 184, Issue 1 https://doi.org/10.1016/S0378-1119(96)00570-7	journal	January 1997
The GATA family (vertebrates and invertebrates) Patient, Roger K.; McGhee, James D. Current Opinion in Genetics & Development, Vol. 12, Issue 4 https://doi.org/10.1016/S0959-437X(02)00319-2	journal	August 2002
The Tudor domain ‘Royal Family’: Tudor, plant Agenet, Chromo, PWWP and MBT domains Maurer-Stroh, Sebastian; Dickens, Nicholas J.; Hughes-Davies, Luke Trends in Biochemical Sciences, Vol. 28, Issue 2 https://doi.org/10.1016/S0968-0004(03)00004-5	journal	February 2003
Structure of SET domain proteins: a new twist on histone methylation Marmorstein, Ronen Trends in Biochemical Sciences, Vol. 28, Issue 2 https://doi.org/10.1016/S0968-0004(03)00007-0	journal	February 2003
The fungal GATA factors Scazzocchio, Claudio Current Opinion in Microbiology, Vol. 3, Issue 2 https://doi.org/10.1016/S1369-5274(00)00063-1	journal	April 2000
A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity De Rybel, Bert; Vassileva, Valya; Parizot, Boris Current Biology, Vol. 20, Issue 19 https://doi.org/10.1016/j.cub.2010.09.007	journal	October 2010
The GATA Factor HANABA TARANU Is Required to Position the Proembryo Boundary in the Early Arabidopsis Embryo Nawy, Tal; Bayer, Martin; Mravec, Jozef Developmental Cell, Vol. 19, Issue 1 https://doi.org/10.1016/j.devcel.2010.06.004	journal	July 2010
Integration of Light- and Brassinosteroid-Signaling Pathways by a GATA Transcription Factor in Arabidopsis Luo, Xiao-Min; Lin, Wen-Hui; Zhu, Shengwei Developmental Cell, Vol. 19, Issue 6 https://doi.org/10.1016/j.devcel.2010.10.023	journal	December 2010
A glimpse into the basis of vision in the kingdom Mycota Idnurm, Alexander; Verma, Surbhi; Corrochano, Luis M. Fungal Genetics and Biology, Vol. 47, Issue 11 https://doi.org/10.1016/j.fgb.2010.04.009	journal	November 2010
The GATA factors AREA and AREB together with the co-repressor NMRA, negatively regulate arginine catabolism in Aspergillus nidulans in response to nitrogen and carbon source Macios, Maria; Caddick, Mark X.; Weglenski, Piotr Fungal Genetics and Biology, Vol. 49, Issue 3 https://doi.org/10.1016/j.fgb.2012.01.004	journal	March 2012
Ectopic expression of different cytokinin-regulated transcription factor genes of Arabidopsis thaliana alters plant growth and development Köllmer, Ireen; Werner, Tomáš; Schmülling, Thomas Journal of Plant Physiology, Vol. 168, Issue 12 https://doi.org/10.1016/j.jplph.2011.02.006	journal	August 2011
A Novel RGL2–DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor Ravindran, Pratibha; Verma, Vivek; Stamm, Petra Molecular Plant, Vol. 10, Issue 10 https://doi.org/10.1016/j.molp.2017.09.004	journal	October 2017
Biological role and mechanism of chromatin readers in plants Scheid, Ray; Chen, Jiani; Zhong, Xuehua Current Opinion in Plant Biology, Vol. 61 https://doi.org/10.1016/j.pbi.2021.102008	journal	June 2021
The LxxLL motif: a multifunctional binding sequence in transcriptional regulation Plevin, Michael J.; Mills, Morgon M.; Ikura, Mitsuhiko Trends in Biochemical Sciences, Vol. 30, Issue 2 https://doi.org/10.1016/j.tibs.2004.12.001	journal	February 2005
The tify family previously known as ZIM Vanholme, B.; Grunewald, W.; Bateman, A. Trends in Plant Science, Vol. 12, Issue 6 https://doi.org/10.1016/j.tplants.2007.04.004	journal	June 2007
Multifaceted roles of FHY3 and FAR1 in light signaling and beyond Wang, Hai; Wang, Haiyang Trends in Plant Science, Vol. 20, Issue 7 https://doi.org/10.1016/j.tplants.2015.04.003	journal	July 2015
Heme biosynthesis and the porphyrias Phillips, John D. Molecular Genetics and Metabolism, Vol. 128, Issue 3 https://doi.org/10.1016/j.ymgme.2019.04.008	journal	November 2019
The emerging role of GATA transcription factors in development and disease Lentjes, Marjolein HFM; Niessen, Hanneke EC; Akiyama, Yoshimitsu Expert Reviews in Molecular Medicine, Vol. 18 https://doi.org/10.1017/erm.2016.2	journal	January 2016
The Negative-Acting NMR Regulatory Protein of Neurospora crassa Binds to and Inhibits the DNA-Binding Activity of the Positive-Acting Nitrogen Regulatory Protein NIT2 Xiao, Xiaodong; Fu, Ying-Hui; Marzluf, George A. Biochemistry, Vol. 34, Issue 27 https://doi.org/10.1021/bi00027a038	journal	July 1995
NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice Wang, Liping; Yin, Hengfu; Qian, Qian Cell Research, Vol. 19, Issue 5 https://doi.org/10.1038/cr.2009.36	journal	March 2009
Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis Friml, Jiří; Vieten, Anne; Sauer, Michael Nature, Vol. 426, Issue 6963 https://doi.org/10.1038/nature02085	journal	November 2003
Transcriptional regulation of nitrogen-associated metabolism and growth Gaudinier, Allison; Rodriguez-Medina, Joel; Zhang, Lifang Nature, Vol. 563, Issue 7730 https://doi.org/10.1038/s41586-018-0656-3	journal	October 2018
Ubiquitin carboxyl-terminal hydrolases are required for period maintenance of the circadian clock at high temperature in Arabidopsis Hayama, Ryosuke; Yang, Peizhen; Valverde, Federico Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-53229-8	journal	November 2019
Chemistry of porphyrins in fossil plants and animals Tahoun, Mariam; Gee, Carole T.; McCoy, Victoria E. RSC Advances, Vol. 11, Issue 13 https://doi.org/10.1039/D0RA10688G	journal	January 2021
Chemistry and biology of siderophores Hider, Robert C.; Kong, Xiaole Natural Product Reports, Vol. 27, Issue 5 https://doi.org/10.1039/b906679a	journal	January 2010
The transduction of the nitrogen regulation signal in Saccharomyces cerevisiae Magasanik, Boris Proceedings of the National Academy of Sciences, Vol. 102, Issue 46 https://doi.org/10.1073/pnas.0507116102	journal	November 2005
Convergence of auxin and gibberellin signaling on the regulation of the GATA transcription factors GNC and GNL in Arabidopsis thaliana Richter, René; Behringer, Carina; Zourelidou, Melina Proceedings of the National Academy of Sciences, Vol. 110, Issue 32 https://doi.org/10.1073/pnas.1304250110	journal	July 2013
Arabidopsis JAGGED links floral organ patterning to tissue growth by repressing Kip-related cell cycle inhibitors Schiessl, Katharina; Muiño, Jose M.; Sablowski, Robert Proceedings of the National Academy of Sciences, Vol. 111, Issue 7 https://doi.org/10.1073/pnas.1320457111	journal	February 2014
Evolutionary history of redox metal-binding domains across the tree of life Harel, A.; Bromberg, Y.; Falkowski, P. G. Proceedings of the National Academy of Sciences, Vol. 111, Issue 19 https://doi.org/10.1073/pnas.1403676111	journal	April 2014
Arrested development of embryonic red cell precursors in mouse embryos lacking transcription factor GATA-1. Fujiwara, Y.; Browne, C. P.; Cunniff, K. Proceedings of the National Academy of Sciences, Vol. 93, Issue 22 https://doi.org/10.1073/pnas.93.22.12355	journal	October 1996
The Aspergillus nidulans GATA Factor SREA Is Involved in Regulation of Siderophore Biosynthesis and Control of Iron Uptake Haas, Hubertus; Zadra, Ivo; Stöffler, Georg Journal of Biological Chemistry, Vol. 274, Issue 8 https://doi.org/10.1074/jbc.274.8.4613	journal	February 1999
COBALT: constraint-based alignment tool for multiple protein sequences Papadopoulos, J. S.; Agarwala, R. Bioinformatics, Vol. 23, Issue 9 https://doi.org/10.1093/bioinformatics/btm076	journal	March 2007
The role of the GATA transcription factor AreB in regulation of nitrogen and carbon metabolism in Aspergillus nidulans Chudzicka-Ormaniec, Patrycja; Macios, Maria; Koper, Michał FEMS Microbiology Letters, Vol. 366, Issue 6 https://doi.org/10.1093/femsle/fnz066	journal	March 2019
Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family Shikata, M. Journal of Experimental Botany, Vol. 55, Issue 397 https://doi.org/10.1093/jxb/erh078	journal	January 2004
The GATA transcription factor GNC plays an important role in photosynthesis and growth in poplar An, Yi; Zhou, Yangyan; Han, Xiao Journal of Experimental Botany, Vol. 71, Issue 6 https://doi.org/10.1093/jxb/erz564	journal	December 2019
iNID: An Analytical Framework for Identifying Network Models for Interplays among Developmental Signaling in Arabidopsis Choi, Daeseok; Choi, Jaemyung; Kang, Byeongsoo Molecular Plant, Vol. 7, Issue 5 https://doi.org/10.1093/mp/sst173	journal	May 2014
Pfam: The protein families database in 2021 Mistry, Jaina; Chuguransky, Sara; Williams, Lowri Nucleic Acids Research, Vol. 49, Issue D1 https://doi.org/10.1093/nar/gkaa913	journal	October 2020
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation Letunic, Ivica; Bork, Peer Nucleic Acids Research, Vol. 49, Issue W1 https://doi.org/10.1093/nar/gkab301	journal	April 2021
Master regulatory GATA transcription factors: mechanistic principles and emerging links to hematologic malignancies Bresnick, E. H.; Katsumura, K. R.; Lee, H. -Y. Nucleic Acids Research, Vol. 40, Issue 13 https://doi.org/10.1093/nar/gks281	journal	April 2012
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis Trifinopoulos, Jana; Nguyen, Lam-Tung; von Haeseler, Arndt Nucleic Acids Research, Vol. 44, Issue W1 https://doi.org/10.1093/nar/gkw256	journal	April 2016
CDD/SPARCLE: the conserved domain database in 2020 Lu, Shennan; Wang, Jiyao; Chitsaz, Farideh Nucleic Acids Research, Vol. 48, Issue D1 https://doi.org/10.1093/nar/gkz991	journal	November 2019
Multiple Classes of Transcription Factors Regulate the Expression of VASCULAR-RELATED NAC-DOMAIN7, a Master Switch of Xylem Vessel Differentiation Endo, Hitoshi; Yamaguchi, Masatoshi; Tamura, Taizo Plant and Cell Physiology, Vol. 56, Issue 2 https://doi.org/10.1093/pcp/pcu134	journal	September 2014
The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS Richter, René; Behringer, Carina; Müller, Isabel Karin Genes & Development, Vol. 24, Issue 18 https://doi.org/10.1101/gad.594910	journal	September 2010
The GATA Family of Transcription Factors in Arabidopsis and Rice Reyes, José C.; Muro-Pastor, M. Isabel; Florencio, Francisco J. Plant Physiology, Vol. 134, Issue 4 https://doi.org/10.1104/pp.103.037788	journal	April 2004
Genome-Wide Reprogramming of Primary and Secondary Metabolism, Protein Synthesis, Cellular Growth Processes, and the Regulatory Infrastructure of Arabidopsis in Response to Nitrogen Scheible, Wolf-Rüdiger; Morcuende, Rosa; Czechowski, Tomasz Plant Physiology, Vol. 136, Issue 1 https://doi.org/10.1104/pp.104.047019	journal	September 2004
Conservation, Convergence, and Divergence of Light-Responsive, Circadian-Regulated, and Tissue-Specific Expression Patterns during Evolution of the Arabidopsis GATA Gene Family Manfield, Iain W.; Devlin, Paul F.; Jen, Chih-Hung Plant Physiology, Vol. 143, Issue 2 https://doi.org/10.1104/pp.106.090761	journal	January 2007
Two GATA Transcription Factors Are Downstream Effectors of Floral Homeotic Gene Action in Arabidopsis Mara, Chloe D.; Irish, Vivian F. Plant Physiology, Vol. 147, Issue 2 https://doi.org/10.1104/pp.107.115634	journal	April 2008
Functional Characterization of the GATA Transcription Factors GNC and CGA1 Reveals Their Key Role in Chloroplast Development, Growth, and Division in Arabidopsis Chiang, Yi-Hsuan; Zubo, Yan O.; Tapken, Wiebke Plant Physiology, Vol. 160, Issue 1 https://doi.org/10.1104/pp.112.198705	journal	July 2012
Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture Hudson, Darryl; Guevara, David R.; Hand, Andrew J. Plant Physiology, Vol. 162, Issue 1 https://doi.org/10.1104/pp.113.217265	journal	April 2013
Cross-Repressive Interactions between SOC1 and the GATAs GNC and GNL/CGA1 in the Control of Greening, Cold Tolerance, and Flowering Time in Arabidopsis Richter, René; Bastakis, Emmanouil; Schwechheimer, Claus Plant Physiology, Vol. 162, Issue 4 https://doi.org/10.1104/pp.113.219238	journal	June 2013
Functional Diversification within the Family of B-GATA Transcription Factors through the Leucine-Leucine-Methionine Domain Behringer, Carina; Bastakis, Emmanouil; Ranftl, Quirin L. Plant Physiology, Vol. 166, Issue 1 https://doi.org/10.1104/pp.114.246660	journal	July 2014
LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana Ranftl, Quirin L.; Bastakis, Emmanouil; Klermund, Carina Plant Physiology, Vol. 170, Issue 4 https://doi.org/10.1104/pp.15.01556	journal	February 2016
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling Kobayashi, Koichi; Ohnishi, Ai; Sasaki, Daichi Plant Physiology, Vol. 173, Issue 4 https://doi.org/10.1104/pp.16.01368	journal	February 2017
Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families Zubo, Yan O.; Blakley, Ivory Clabaugh; Franco-Zorrilla, José M. Plant Physiology, Vol. 178, Issue 1 https://doi.org/10.1104/pp.18.00414	journal	July 2018
HANABA TARANU Is a GATA Transcription Factor That Regulates Shoot Apical Meristem and Flower Development in Arabidopsis Zhao, Yuanxiang; Medrano, Leonard; Ohashi, Kazuaki The Plant Cell, Vol. 16, Issue 10 https://doi.org/10.1105/tpc.104.024869	journal	September 2004
A Conserved Mechanism of Bract Suppression in the Grass Family Whipple, Clinton J.; Hall, Darren H.; DeBlasio, Stacy The Plant Cell, Vol. 22, Issue 3 https://doi.org/10.1105/tpc.109.073536	journal	March 2010
Transcription Repressor HANABA TARANU Controls Flower Development by Integrating the Actions of Multiple Hormones, Floral Organ Specification Genes, and GATA3 Family Genes inArabidopsis Zhang, Xiaolan; Zhou, Yun; Ding, Lian The Plant Cell, Vol. 25, Issue 1 https://doi.org/10.1105/tpc.112.107854	journal	January 2013
LLM-Domain B-GATA Transcription Factors Promote Stomatal Development Downstream of Light Signaling Pathways in Arabidopsis thaliana Hypocotyls Klermund, Carina; Ranftl, Quirin L.; Diener, Julia The Plant Cell, Vol. 28, Issue 3 https://doi.org/10.1105/tpc.15.00783	journal	February 2016
LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis Bastakis, Emmanouil; Hedtke, Boris; Klermund, Carina The Plant Cell, Vol. 30, Issue 3 https://doi.org/10.1105/tpc.17.00947	journal	February 2018
Transcription Factors FHY3 and FAR1 Regulate Light-Induced CIRCADIAN CLOCK ASSOCIATED1 Gene Expression in Arabidopsis Liu, Yang; Ma, Mengdi; Li, Gang The Plant Cell, Vol. 32, Issue 5 https://doi.org/10.1105/tpc.19.00981	journal	March 2020
Modulation of the ligand binding properties of the transcription repressor NmrA by GATA-containing DNA and site-directed mutagenesis Lamb, Heather K.; Ren, Jingshan; Park, Alison Protein Science, Vol. 13, Issue 12 https://doi.org/10.1110/ps.04958904	journal	January 2009
Supply and demand—heme synthesis, salvage and utilization by Apicomplexa Kloehn, Joachim; Harding, Clare R.; Soldati‐Favre, Dominique The FEBS Journal, Vol. 288, Issue 2 https://doi.org/10.1111/febs.15445	journal	June 2020
The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana: Control of leaf shape and size by AtGRF5 and AN3 Horiguchi, Gorou; Kim, Gyung-Tae; Tsukaya, Hirokazu The Plant Journal, Vol. 43, Issue 1 https://doi.org/10.1111/j.1365-313X.2005.02429.x	journal	June 2005
Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity: A GATA gene for chlorophyll and glucose sensitivity Bi, Yong-Mei; Zhang, Yu; Signorelli, Tara The Plant Journal, Vol. 44, Issue 4 https://doi.org/10.1111/j.1365-313X.2005.02568.x	journal	October 2005
The BME3 (Blue Micropylar End 3) GATA zinc finger transcription factor is a positive regulator of Arabidopsis seed germination: GATA zinc finger in seed germination Liu, Po-Pu; Koizuka, Nobuya; Martin, Ruth C. The Plant Journal, Vol. 44, Issue 6 https://doi.org/10.1111/j.1365-313X.2005.02588.x	journal	November 2005
Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings: Dynamics of transcriptional and metabolic responses to sucrose Osuna, Daniel; Usadel, Bjorn; Morcuende, Rosa The Plant Journal, Vol. 49, Issue 3 https://doi.org/10.1111/j.1365-313X.2006.02979.x	journal	January 2007
Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis Yang, Peizhen; Smalle, Jan; Lee, Sangsook The Plant Journal, Vol. 51, Issue 3 https://doi.org/10.1111/j.1365-313X.2007.03154.x	journal	June 2007
Transcription factor families inferred from genome sequences of photosynthetic stramenopiles Rayko, Edda; Maumus, Florian; Maheswari, Uma New Phytologist, Vol. 188, Issue 1 https://doi.org/10.1111/j.1469-8137.2010.03371.x	journal	July 2010
Transmitting the signal of excess nitrogen in Saccharomyces cerevisiae from the Tor proteins to the GATA factors: connecting the dots Cooper, Terrance G. FEMS Microbiology Reviews, Vol. 26, Issue 3 https://doi.org/10.1111/j.1574-6976.2002.tb00612.x	journal	August 2002
TheBrassica napusGATA transcription factor BnA5.ZML1 is a stigma compatibility factor Duan, Zhiqiang; Zhang, Yatao; Tu, Jinxing Journal of Integrative Plant Biology, Vol. 62, Issue 8 https://doi.org/10.1111/jipb.12916	journal	March 2020
OsGATA7 modulates brassinosteroids-mediated growth regulation and influences architecture and grain shape Zhang, Yan-Jie; Zhang, Yu; Zhang, Liang-Li Plant Biotechnology Journal, Vol. 16, Issue 7 https://doi.org/10.1111/pbi.12887	journal	February 2018
Implications of region‐specific gene expression for development of the partially fused petunia corolla Preston, Jill C.; Powers, Beck; Kostyun, Jamie L. The Plant Journal, Vol. 100, Issue 1 https://doi.org/10.1111/tpj.14436	journal	July 2019
Cloning of the Arabidopsis Clock Gene TOC1, an Autoregulatory Response Regulator Homolog Strayer, C. Science, Vol. 289, Issue 5480 https://doi.org/10.1126/science.289.5480.768	journal	August 2000
Transcription Factor NsdD Regulates the Expression of Genes Involved in Plant Biomass-Degrading Enzymes, Conidiation, and Pigment Biosynthesis in Penicillium oxalicum He, Qi-Peng; Zhao, Shuai; Wang, Jiu-Xiang Applied and Environmental Microbiology, Vol. 84, Issue 18 https://doi.org/10.1128/AEM.01039-18	journal	September 2018
Differential Expression of Aspergillus nidulans Ammonium Permease Genes Is Regulated by GATA Transcription Factor AreA Monahan, Brendon J.; Askin, Marion C.; Hynes, Michael J. Eukaryotic Cell, Vol. 5, Issue 2 https://doi.org/10.1128/EC.5.2.226-237.2006	journal	February 2006
The Yeast GATA Factor Gat1 Occupies a Central Position in Nitrogen Catabolite Repression-Sensitive Gene Activation Georis, I.; Feller, A.; Vierendeels, F. Molecular and Cellular Biology, Vol. 29, Issue 13 https://doi.org/10.1128/MCB.00399-09	journal	April 2009
Alternative Use of DNA Binding Domains by the Neurospora White Collar Complex Dictates Circadian Regulation and Light Responses Wang, Bin; Zhou, Xiaoying; Loros, Jennifer J. Molecular and Cellular Biology, Vol. 36, Issue 5 https://doi.org/10.1128/MCB.00841-15	journal	December 2015
urbs1, a gene regulating siderophore biosynthesis in Ustilago maydis, encodes a protein similar to the erythroid transcription factor GATA-1. Voisard, C.; Wang, J.; McEvoy, J. L. Molecular and Cellular Biology, Vol. 13, Issue 11 https://doi.org/10.1128/MCB.13.11.7091	journal	November 1993
Evolution of Light-Regulated Plant Promoters Argüello-Astorga, Gerardo; Herrera-Estrella, Luis Annual Review of Plant Physiology and Plant Molecular Biology, Vol. 49, Issue 1 https://doi.org/10.1146/annurev.arplant.49.1.525	journal	June 1998
Light-Regulated Transcription Terzaghi, William B.; Cashmore, Anthony R. Annual Review of Plant Physiology and Plant Molecular Biology, Vol. 46, Issue 1 https://doi.org/10.1146/annurev.pp.46.060195.002305	journal	June 1995
Familial and Somatic BAP1 Mutations Inactivate ASXL1/2-Mediated Allosteric Regulation of BAP1 Deubiquitinase by Targeting Multiple Independent Domains Peng, Hongzhuang; Prokop, Jeremy; Karar, Jayashree Cancer Research, Vol. 78, Issue 5 https://doi.org/10.1158/0008-5472.CAN-17-2876	journal	February 2018
The Neurospora Circadian System Dunlap, Jay C.; Loros, Jennifer J. Journal of Biological Rhythms, Vol. 19, Issue 5 https://doi.org/10.1177/0748730404269116	journal	October 2004
The evolution of protostome GATA factors: Molecular phylogenetics, synteny, and intron/exon structure reveal orthologous relationships Gillis, William Q.; Bowerman, Bruce A.; Schneider, Stephan Q. BMC Evolutionary Biology, Vol. 8, Issue 1 https://doi.org/10.1186/1471-2148-8-112	journal	April 2008
Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa) He, Peilong; Wang, Xiaowen; Zhang, Xiaobo BMC Plant Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s12870-018-1452-9	journal	November 2018
Combinatorial regulation of tissue specification by GATA and FOG factors Chlon, Timothy M.; Crispino, John D. Development, Vol. 139, Issue 21 https://doi.org/10.1242/dev.080440	journal	November 2012
Stable establishment of cotyledon identity during embryogenesis in Arabidopsis by ANGUSTIFOLIA3 and HANABA TARANU Kanei, Mari; Horiguchi, Gorou; Tsukaya, Hirokazu Development, Vol. 139, Issue 13 https://doi.org/10.1242/dev.081547	journal	July 2012
The Caenorhabditis elegans genes egl-27 and egr-1 are similar to MTA1, a member of a chromatin regulatory complex, and are redundantly required for embryonic patterning Solari, F.; Bateman, A.; Ahringer, J. Development, Vol. 126, Issue 11 https://doi.org/10.1242/dev.126.11.2483	journal	June 1999
Characterization of a Unique GATA Family Gene That Responds to Both Light and Cytokinin inArabidopsis thaliana Naito, Takahito; Kiba, Takatoshi; Koizumi, Nobuya Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 6 https://doi.org/10.1271/bbb.60692	journal	June 2007
Characterization of a Novel Gene Encoding a Putative Single Zinc-finger Protein,ZIM, Expressed during the Reproductive Phase inArabidopsis thaliana Nishii, Akiko; Takemura, Miho; Fujita, Hidetomo Bioscience, Biotechnology, and Biochemistry, Vol. 64, Issue 7 https://doi.org/10.1271/bbb.64.1402	journal	January 2000
HANABA TARANU (HAN) Bridges Meristem and Organ Primordia Boundaries through PINHEAD, JAGGED, BLADE-ON-PETIOLE2 and CYTOKININ OXIDASE 3 during Flower Development in Arabidopsis Ding, Lian; Yan, Shuangshuang; Jiang, Li PLOS Genetics, Vol. 11, Issue 9 https://doi.org/10.1371/journal.pgen.1005479	journal	September 2015
GNC and CGA1 Modulate Chlorophyll Biosynthesis and Glutamate Synthase (GLU1/Fd-GOGAT) Expression in Arabidopsis Hudson, Darryl; Guevara, David; Yaish, Mahmoud W. PLoS ONE, Vol. 6, Issue 11 https://doi.org/10.1371/journal.pone.0026765	journal	November 2011
Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA transcription factors Kim, Mangi; Xi, Hong; Park, Jongsun PLOS ONE, Vol. 16, Issue 5 https://doi.org/10.1371/journal.pone.0252181	journal	May 2021
SREB, a GATA Transcription Factor That Directs Disparate Fates in Blastomyces dermatitidis Including Morphogenesis and Siderophore Biosynthesis Gauthier, Gregory M.; Sullivan, Thomas D.; Gallardo, Sergio S. PLoS Pathogens, Vol. 6, Issue 4 https://doi.org/10.1371/journal.ppat.1000846	journal	April 2010
Nitrogen Catabolite Repression in Saccharomyces cerevisiae Hofman-Bang, Jacob Molecular Biotechnology, Vol. 12, Issue 1 https://doi.org/10.1385/MB:12:1:35	journal	January 1999
B-GATA transcription factors – insights into their structure, regulation, and role in plant development Behringer, Carina; Schwechheimer, Claus Frontiers in Plant Science, Vol. 6 https://doi.org/10.3389/fpls.2015.00090	journal	February 2015
Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants Unamba, Chibuikem I. N.; Nag, Akshay; Sharma, Ram K. Frontiers in Plant Science, Vol. 6 https://doi.org/10.3389/fpls.2015.01074	journal	December 2015
Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice Gupta, Priyanka; Nutan, Kamlesh K.; Singla-Pareek, Sneh L. Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.01944	journal	November 2017
Developmental Analysis of the GATA Factor HANABA TARANU Mutants in Medicago truncatula Reveals Their Roles in Nodule Formation Xu, Yiteng; Wang, Hongfeng; Lu, Zhichao Frontiers in Plant Science, Vol. 12 https://doi.org/10.3389/fpls.2021.616776	journal	April 2021
Overexpression of SlGATA17 Promotes Drought Tolerance in Transgenic Tomato Plants by Enhancing Activation of the Phenylpropanoid Biosynthetic Pathway Zhao, Tingting; Wu, Tairu; Pei, Tong Frontiers in Plant Science, Vol. 12 https://doi.org/10.3389/fpls.2021.634888	journal	March 2021
Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana Li, Yichao; Mullin, Maxwell; Zhang, Yingnan Plants, Vol. 9, Issue 12 https://doi.org/10.3390/plants9121751	journal	December 2020
The HARE-HTH and associated domains: Novel modules in the coordination of epigenetic DNA and protein modifications Aravind, L.; Iyer, Lakshminarayan M. Cell Cycle, Vol. 11, Issue 1 https://doi.org/10.4161/cc.11.1.18475	journal	January 2012
The chimeric repressor for the GATA4 transcription factor improves tolerance to nitrogen deficiency in Arabidopsis Shin, Ji Min; Chung, KwiMi; Sakamoto, Shingo Plant Biotechnology, Vol. 34, Issue 3 https://doi.org/10.5511/plantbiotechnology.17.0727a	journal	January 2017

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Additional file 1 of Analysis of GATA transcription factors and their expression patterns under abiotic stress in grapevine (Vitis vinifera L.) Zhang, Xiuming; Ma, Jiahui; Yang, Shijin figshare https://doi.org/10.6084/m9.figshare.24715405.v1	dataset	January 2023

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phylogenomics
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