DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Predicting the Mechanical Response of Polyhydroxyalkanoate Biopolymers Using Molecular Dynamics Simulations

Journal Article · · Polymers

Polyhydroxyalkanoates (PHAs) have emerged as a promising class of biosynthesizable, biocompatible, and biodegradable polymers to replace petroleum-based plastics for addressing the global plastic pollution problem. Although PHAs offer a wide range of chemical diversity, the structure–property relationships in this class of polymers remain poorly established. In particular, the available experimental data on the mechanical properties is scarce. In this contribution, we have used molecular dynamics simulations employing a recently developed forcefield to predict chemical trends in mechanical properties of PHAs. Specifically, we make predictions for Young’s modulus, and yield stress for a wide range of PHAs that exhibit varying lengths of backbone and side chains as well as different side chain functional groups. Deformation simulations were performed at six different strain rates and six different temperatures to elucidate their influence on the mechanical properties. Our results indicate that Young’s modulus and yield stress decrease systematically with increase in the number of carbon atoms in the side chain as well as in the polymer backbone. In addition, we find that the mechanical properties were strongly correlated with the chemical nature of the functional group. The functional groups that enhance the interchain interactions lead to an enhancement in both the Young’s modulus and yield stress. Finally, we applied the developed methodology to study composition-dependence of the mechanical properties for a selected set of binary and ternary copolymers. Overall, our work not only provides insights into rational design rules for tailoring mechanical properties in PHAs, but also opens up avenues for future high throughput atomistic simulation studies geared towards identifying functional PHA polymer candidates for targeted applications.

Sponsoring Organization:
USDOE
OSTI ID:
1840791
Journal Information:
Polymers, Journal Name: Polymers Journal Issue: 2 Vol. 14; ISSN POLYCK; ISSN 2073-4360
Publisher:
MDPI AGCopyright Statement
Country of Publication:
Switzerland
Language:
English

References (63)

Mechanical Properties of Conjugated Polymers and Polymer-Fullerene Composites as a Function of Molecular Structure journal October 2013
Biodegradable Polyhydroxyalkanoates by Stereoselective Copolymerization of Racemic Diolides: Stereocontrol and Polyolefin‐Like Properties journal March 2020
The estimation of mechanical properties of polymers from molecular structure journal August 1993
Polyhydroxyalkanoates: Recent Advances in Their Synthesis and Applications journal October 2019
Time, temperature, and strain effects on viscoelastic Poisson's ratio of epoxy resins journal July 2008
Tributyl citrate as an effective plasticizer for biodegradable polymers: effect of plasticizer on free volume and transport and mechanical properties: Tributyl citrate as an effective plasticizer for biodegradable polymers journal October 2018
Dynamic mechanical relaxation behavior of block copolymers at high temperatures journal January 2001
Comparing the mechanical response of di-, tri-, and tetra-functional resin epoxies with reactive molecular dynamics journal November 2017
Material Properties and Glass Transition Temperatures of Different Thermoplastic Starches After Extrusion Processing journal February 2003
Fast Parallel Algorithms for Short-Range Molecular Dynamics journal March 1995
Molecular dynamics simulations of the structure and mechanical properties of silica glass using ReaxFF journal July 2016
Three-block copolymers: morphologies and stress - strain properties of samples prepared under various experimental conditions journal July 1975
Chemical synthesis of high molecular weight poly(3-hydroxybutyrate-co-4-hydroxybutyrate) journal January 1995
VMD: Visual molecular dynamics journal February 1996
Biopolymers: Biodegradable Alternatives to Traditional Plastics book January 2018
Prospect of Synechocystis sp. PCC 6803 for synthesis of poly(3-hydroxybutyrate-co-4-hydroxybutyrate) journal September 2020
Recent developments in Polyhydroxyalkanoates (PHAs) production – A review journal June 2020
Toward Infinitely Recyclable Plastics Derived from Renewable Cyclic Esters journal February 2019
The effect of alkyl chain length on mechanical properties of fatty-acid-functionalized amidoamine-epoxy systems journal July 2018
Molecular dynamics simulation of polyamide-based materials – A review journal December 2021
Influence of plasticizers on thermal and mechanical properties of biocomposite filaments made from lignin and polylactic acid for 3D printing journal January 2021
Predicting mechanical response of crosslinked epoxy using ReaxFF journal January 2014
Natural-based plasticizers and biopolymer films: A review journal March 2011
Recent progress in the utilization of biosynthesized polyhydroxyalkanoates for biomedical applications – Review journal December 2018
Microalgae as source of polyhydroxyalkanoates (PHAs) — A review journal June 2019
Multiscale micromorphic theory compatible with MD simulations in both time-scale and length-scale journal June 2020
Molecular dynamics simulation for the quantitative prediction of experimental tensile strength of a polymer material journal October 2020
International policies to reduce plastic marine pollution from single-use plastics (plastic bags and microbeads): A review journal May 2017
Reducing marine pollution from single-use plastics (SUPs): A review journal December 2018
Molecular dynamics predictions of thermal and mechanical properties of thermoset polymer EPON862/DETDA journal June 2011
Blends of highly branched and linear poly(arylene ether sulfone)s: Multiscale effect of the degree of branching on the morphology and mechanical properties journal February 2020
Production and characterization of poly(3-hydroxypropionate-co-4-hydroxybutyrate) with fully controllable structures by recombinant Escherichia coli containing an engineered pathway journal July 2012
Machine Learning: New Ideas and Tools in Environmental Science and Engineering journal August 2021
Foldamer Architectures of Triazine-Based Sequence-Defined Polymers Investigated with Molecular Dynamics Simulations and Enhanced Sampling Methods journal October 2019
Predicting the Miscibility and Rigidity of Poly(lactic- co -glycolic acid)/Polyethylene Glycol Blends via Molecular Dynamics Simulations journal May 2020
Composition and Configuration Dependence of Glass-Transition Temperature in Binary Copolymers and Blends of Polyhydroxyalkanoate Biopolymers journal June 2021
Scale-Dependent Miscibility of Polylactide and Polyhydroxybutyrate: Molecular Dynamics Simulations journal December 2017
Enhanced Mechanical and Adhesion Properties in Sustainable Triblock Copolymers via Non-covalent Interactions journal March 2018
Preparation and characterization of (R)-poly(.beta.-hydroxybutyrate)-poly(.epsilon.-caprolactone) and (R)-poly(.beta.-hydroxybutyrate)-poly(lactide) degradable diblock copolymers journal September 1993
Temperature-Dependent Elasticity of a Semicrystalline Interphase Composed of Freely Rotating Chains journal September 2003
Sustainable Poly(lactide- b -butadiene) Multiblock Copolymers with Enhanced Mechanical Properties journal September 2013
Ring-Opening Copolymerization of ( R )-β-Butyrolactone with Macrolide:  A New Series of Poly(Hydroxyalkanoate)s journal April 1999
Polyhydroxyalkanoates: opening doors for a sustainable future journal April 2016
Packaging materials with desired mechanical and barrier properties and full chemical recyclability journal August 2019
Water soluble polyhydroxyalkanoates: future materials for therapeutic applications journal January 2015
Polyhydroxyalkanoates as biomaterials journal January 2017
Molecular dynamics simulations for glass transition temperature predictions of polyhydroxyalkanoate biopolymers journal January 2020
Measurement of Epoxy Resin Tension, Compression, and Shear Stress–Strain Curves over a Wide Range of Strain Rates Using Small Test Specimens journal July 2008
Unified equation for the strength of bulk metallic glasses journal May 2006
A unified formulation of the constant temperature molecular dynamics methods journal July 1984
Evaluation of interface properties of carbon fiber/resin using the full atomistic model considering the electric charge state journal July 2020
Tuning the optical properties of poly(o-phenylenediamine-co-pyrrole) via template mediated copolymerization journal January 2018
Modeling of graphene–polymer interfacial mechanical behavior using molecular dynamics journal November 2008
Effects of temperature and strain rate on the deformation of amorphous polyethylene: a comparison between molecular dynamics simulations and experimental results journal August 2013
Temperature dependence of the Young’s modulus of polymers calculated using a hybrid molecular mechanics–molecular dynamics method journal August 2018
Polyhydroxyalkanoate: a biodegradable polymer (a mini review) journal December 2019
Canonical dynamics: Equilibrium phase-space distributions journal March 1985
Role of the Intercrystalline Tie Chains Network in the Mechanical Response of Semicrystalline Polymers journal May 2017
Production, use, and fate of all plastics ever made journal July 2017
Stereosequenced crystalline polyhydroxyalkanoates from diastereomeric monomer mixtures journal November 2019
Plastic Pollution and Potential Solutions journal September 2018
Fully Atomistic Molecular Dynamics Computation of Physico-Mechanical Properties of PB, PS, and SBS journal July 2019
Manufacturing and Properties of Binary Blend from Bacterial Polyester Poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) and Poly(caprolactone) with Improved Toughness journal May 2020