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Title: Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA

Journal Article · · Molecular Cell

Not Available

Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1834273
Journal Information:
Molecular Cell, Journal Name: Molecular Cell Journal Issue: 5 Vol. 35; ISSN 1097-2765
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English

References (45)

Zooming in on ATP Hydrolysis in F1 journal December 2005
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997
A DEAD-Box Protein Functions as an ATP-Dependent RNA Chaperone in Group I Intron Splicing journal June 2002
DExD/H-box proteins and their partners: helping RNA helicases unwind journal July 2003
Structural Basis for RNA Unwinding by the DEAD-Box Protein Drosophila Vasa journal April 2006
The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on mRNA journal August 2006
Involvement of DEAD-box Proteins in Group I and Group II Intron Splicing. Biochemical Characterization of Mss116p, ATP Hydrolysis-dependent and -independent Mechanisms, and General RNA Chaperone Activity journal January 2007
Inference of Macromolecular Assemblies from Crystalline State journal September 2007
Function of the C-terminal Domain of the DEAD-box Protein Mss116p Analyzed in Vivo and in Vitro journal February 2008
Unwinding by Local Strand Separation Is Critical for the Function of DEAD-Box Proteins as RNA Chaperones journal June 2009
A DEAD Protein that Activates Intron Self-Splicing without Unwinding RNA journal November 2006
Do DEAD-Box Proteins Promote Group II Intron Splicing without Unwinding RNA? journal October 2007
DEAD-Box Proteins Unwind Duplexes by Local Strand Separation journal October 2007
Protein production by auto-induction in high-density shaking cultures journal May 2005
RNA helicases — one fold for many functions journal June 2007
ATP Ground- and Transition States of Bacterial Enhancer Binding AAA+ ATPases Support Complex Formation with Their Target Protein, σ54 journal April 2007
Cooperative Binding of ATP and RNA Substrates to the DEAD/H Protein DbpA journal March 2002
Probing the Mechanisms of DEAD-Box Proteins as General RNA Chaperones: The C-Terminal Domain of CYT-19 Mediates General Recognition of RNA journal February 2007
The DEAD Box Protein eIF4A. 1. A Minimal Kinetic and Thermodynamic Framework Reveals Coupled Binding of RNA and Nucleotide journal February 1998
The DEAD Box Protein eIF4A. 2. A Cycle of Nucleotide and RNA-Dependent Conformational Changes journal February 1998
Insights into RNA unwinding and ATP hydrolysis by the flavivirus NS3 protein journal November 2008
Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone journal October 2007
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 journal June 2008
The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner journal February 2009
The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases journal October 2006
The newly discovered Q motif of DEAD-box RNA helicases regulates RNA-binding and helicase activity journal June 2004
The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function journal December 2004
A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone journal February 2006
Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone journal October 2006
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase journal January 2008
Crystal structure of the yeast eIF4A-eIF4G complex: An RNA-helicase controlled by protein-protein interactions journal July 2008
DEAD-box proteins can completely separate an RNA duplex using a single ATP journal December 2008
ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding journal December 2008
Electrostatics of nanosystems: Application to microtubules and the ribosome journal August 2001
The DE X D/H-box RNA Helicase DDX19 Is Regulated by an α-Helical Switch journal February 2009
Searching protein structure databases with DaliLite v.3 journal September 2008
Dead-box proteins: a family affair—active and passive players in RNP-remodeling journal August 2006
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids journal May 2007
Coot model-building tools for molecular graphics journal November 2004
The CCP4 suite programs for protein crystallography journal September 1994
Refinement of Macromolecular Structures by the Maximum-Likelihood Method journal May 1997
Crystallization and preliminary X-ray diffraction of the DEAD-box protein Mss116p complexed with an RNA oligonucleotide and AMP-PNP journal July 2009
Structure of the Exon Junction Core Complex with a Trapped DEAD-Box ATPase Bound to RNA journal September 2006
Mechanism of ATP turnover inhibition in the EJC journal November 2008
MLN51 Stimulates the RNA-Helicase Activity of eIF4AIII journal March 2007