Title: Parsed synthesis of pyocyanin via co-culture enables context-dependent intercellular redox communication

Journal Article · · Microbial Cell Factories

Abstract Background Microbial co-cultures and consortia are of interest in cell-based molecular production and even as “smart” therapeutics in that one can take advantage of division of labor and specialization to expand both the range of available functions and mechanisms for control. The development of tools that enable coordination and modulation of consortia will be crucial for future application of multi-population cultures. In particular, these systems would benefit from an expanded toolset that enables orthogonal inter-strain communication. Results We created a co-culture for the synthesis of a redox-active phenazine signaling molecule, pyocyanin (PYO), by dividing its synthesis into the generation of its intermediate, phenazine carboxylic acid (PCA) from the first strain, followed by consumption of PCA and generation of PYO in a second strain. Interestingly, both PCA and PYO can be used to actuate gene expression in cells engineered with the soxRS oxidative stress regulon, although importantly this signaling activity was found to depend on growth media. That is, like other signaling motifs in bacterial systems, the signaling activity is context dependent. We then used this co-culture’s phenazine signals in a tri-culture to modulate gene expression and production of three model products: quorum sensing molecule autoinducer-1 and two fluorescent marker proteins, eGFP and DsRed. We also showed how these redox-based signals could be intermingled with other quorum-sensing (QS) signals which are more commonly used in synthetic biology, to control complex behaviors. To provide control over product synthesis in the tri-cultures, we also showed how a QS-induced growth control module could guide metabolic flux in one population and at the same time guide overall tri-culture function. Specifically, we showed that phenazine signal recognition, enabled through the oxidative stress response regulon soxRS, was dependent on media composition such that signal propagation within our parsed synthetic system could guide different desired outcomes based on the prevailing environment. In doing so, we expanded the range of signaling molecules available for coordination and the modes by which they can be utilized to influence overall function of a multi-population culture. Conclusions Our results show that redox-based signaling can be intermingled with other quorum sensing signaling in ways that enable user-defined control of microbial consortia yielding various outcomes defined by culture medium. Further, we demonstrated the utility of our previously designed growth control module in influencing signal propagation and metabolic activity is unimpeded by orthogonal redox-based signaling. By exploring novel multi-modal strategies for guiding communication and consortia outcome, the concepts introduced here may prove to be useful for coordination of multiple populations within complex microbial systems.

Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI ID:
1832503
Journal Information:
Microbial Cell Factories, Journal Name: Microbial Cell Factories Journal Issue: 1 Vol. 20; ISSN 1475-2859
Publisher:
Springer Science + Business MediaCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (28)

Co-culture engineering for microbial biosynthesis of 3-amino-benzoic acid in Escherichia coli journal June 2016
A low-copy-number vector utilizing β-galactosidase for the analysis of gene control elements journal January 1987
Towards synthetic microbial consortia for bioprocessing journal October 2012
Advances in the development and application of microbial consortia for metabolic engineering journal December 2019
Systems Metabolic Engineering Strategies: Integrating Systems and Synthetic Biology with Metabolic Engineering journal August 2019
Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli journal May 2010
Experimental and computational optimization of an Escherichia coli co-culture for the efficient production of flavonoids journal May 2016
Balancing the non-linear rosmarinic acid biosynthetic pathway by modular co-culture engineering journal July 2019
Building microbial factories for the production of aromatic amino acid pathway derivatives: From commodity chemicals to plant-sourced natural products journal March 2020
Metabolic engineering of E. coli for pyocyanin production journal March 2021
Development of a Quorum-Sensing Based Circuit for Control of Coculture Population Composition in a Naringenin Production System journal February 2020
A synthetic Escherichia coli predator–prey ecosystem journal January 2008
Synchronized cycles of bacterial lysis for in vivo delivery journal July 2016
Distributing a metabolic pathway among a microbial consortium enhances production of natural products journal January 2015
Electronic control of gene expression and cell behaviour in Escherichia coli through redox signalling journal January 2017
Tools for engineering coordinated system behaviour in synthetic microbial consortia journal July 2018
Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition journal September 2019
A redox-based electrogenetic CRISPR system to connect with and control biological information networks journal May 2020
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products journal May 2000
Engineering Escherichia coli coculture systems for the production of biochemical products journal June 2015
Evidence of link between quorum sensing and sugar metabolism in Escherichia coli revealed via cocrystal structures of LsrK and HPr journal June 2018
Escherichia coli Binary Culture Engineered for Direct Fermentation of Hemicellulose to a Biofuel journal October 2010
Functional Analysis of Genes for Biosynthesis of Pyocyanin and Phenazine-1-Carboxamide from Pseudomonas aeruginosa PAO1 journal November 2001
Effect of sdiA on Biosensors of N -Acylhomoserine Lactones journal July 2005
The Multiple Signaling Systems Regulating Virulence in Pseudomonas aeruginosa journal March 2012
Effect of Nutrient Concentration on the Growth of Escherichia coli journal January 1971
Engineering microbial consortia by division of labor journal February 2019
Role of Dietary Nutrients in the Modulation of Gut Microbiota: A Narrative Review journal January 2020