Polarizable Water Potential Derived from a Model Electron Density
Abstract
A new empirical potential for efficient, large scale molecular dynamics simulation of water is presented. The HIPPO (Hydrogen-like Intermolecular Polarizable POtential) force field is based upon the model electron density of a hydrogen-like atom. This framework is used to derive and parametrize individual terms describing charge penetration damped permanent electrostatics, damped polarization, charge transfer, anisotropic Pauli repulsion, and damped dispersion interactions. Initial parameter values were fit to Symmetry Adapted Perturbation Theory (SAPT) energy components for ten water dimer configurations, as well as the radial and angular dependence of the canonical dimer. The SAPT-based parameters were then systematically refined to extend the treatment to water bulk phases. The final HIPPO water model provides a balanced representation of a wide variety of properties of gas phase clusters, liquid water, and ice polymorphs, across a range of temperatures and pressures. This water potential yields a rationalization of water structure, dynamics, and thermodynamics explicitly correlated with an ab initio energy decomposition, while providing a level of accuracy comparable or superior to previous polarizable atomic multipole force fields. The HIPPO water model serves as a cornerstone around which similarly detailed physics-based models can be developed for additional molecular species.
- Authors:
-
- Washington Univ., St. Louis, MO (United States); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
- Washington Univ., St. Louis, MO (United States)
- Publication Date:
- Research Org.:
- Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
- Sponsoring Org.:
- USDOE National Nuclear Security Administration (NNSA); National Institutes of Health (NIH)
- OSTI Identifier:
- 1830522
- Report Number(s):
- SAND-2021-13658J
Journal ID: ISSN 1549-9618; 701252
- Grant/Contract Number:
- NA0003525; R01 GM106137; R01 GM114237
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Chemical Theory and Computation
- Additional Journal Information:
- Journal Volume: 17; Journal Issue: 11; Journal ID: ISSN 1549-9618
- Publisher:
- American Chemical Society
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; molecular mechanics; energy; oligomers; potential energy; molecules
Citation Formats
Rackers, Joshua A., Silva, Roseane R., Wang, Zhi, and Ponder, Jay W. Polarizable Water Potential Derived from a Model Electron Density. United States: N. p., 2021.
Web. doi:10.1021/acs.jctc.1c00628.
Rackers, Joshua A., Silva, Roseane R., Wang, Zhi, & Ponder, Jay W. Polarizable Water Potential Derived from a Model Electron Density. United States. https://doi.org/10.1021/acs.jctc.1c00628
Rackers, Joshua A., Silva, Roseane R., Wang, Zhi, and Ponder, Jay W. Tue .
"Polarizable Water Potential Derived from a Model Electron Density". United States. https://doi.org/10.1021/acs.jctc.1c00628. https://www.osti.gov/servlets/purl/1830522.
@article{osti_1830522,
title = {Polarizable Water Potential Derived from a Model Electron Density},
author = {Rackers, Joshua A. and Silva, Roseane R. and Wang, Zhi and Ponder, Jay W.},
abstractNote = {A new empirical potential for efficient, large scale molecular dynamics simulation of water is presented. The HIPPO (Hydrogen-like Intermolecular Polarizable POtential) force field is based upon the model electron density of a hydrogen-like atom. This framework is used to derive and parametrize individual terms describing charge penetration damped permanent electrostatics, damped polarization, charge transfer, anisotropic Pauli repulsion, and damped dispersion interactions. Initial parameter values were fit to Symmetry Adapted Perturbation Theory (SAPT) energy components for ten water dimer configurations, as well as the radial and angular dependence of the canonical dimer. The SAPT-based parameters were then systematically refined to extend the treatment to water bulk phases. The final HIPPO water model provides a balanced representation of a wide variety of properties of gas phase clusters, liquid water, and ice polymorphs, across a range of temperatures and pressures. This water potential yields a rationalization of water structure, dynamics, and thermodynamics explicitly correlated with an ab initio energy decomposition, while providing a level of accuracy comparable or superior to previous polarizable atomic multipole force fields. The HIPPO water model serves as a cornerstone around which similarly detailed physics-based models can be developed for additional molecular species.},
doi = {10.1021/acs.jctc.1c00628},
journal = {Journal of Chemical Theory and Computation},
number = 11,
volume = 17,
place = {United States},
year = {2021},
month = {10}
}
Works referenced in this record:
Development of an Advanced Force Field for Water Using Variational Energy Decomposition Analysis
journal, August 2019
- Das, Akshaya K.; Urban, Lars; Leven, Itai
- Journal of Chemical Theory and Computation, Vol. 15, Issue 9
Energy Component Analysis of π Interactions
journal, June 2012
- Sherrill, C. David
- Accounts of Chemical Research, Vol. 46, Issue 4
Self‐Diffusion in Liquid Water to −31°C
journal, December 1972
- Gillen, Kenneth T.; Douglass, D. C.; Hoch, M. J. R.
- The Journal of Chemical Physics, Vol. 57, Issue 12
Improved Formulas for the Calculation of the Electrostatic Contribution to the Intermolecular Interaction Energy from Multipolar Expansion of the Electronic Distribution
journal, December 2003
- Piquemal, Jean-Philip; Gresh, Nohad; Giessner-Prettre, Claude
- The Journal of Physical Chemistry A, Vol. 107, Issue 48
Predictions of the Properties of Water from First Principles
journal, March 2007
- Bukowski, R.; Szalewicz, K.; Groenenboom, G. C.
- Science, Vol. 315, Issue 5816
Assessing many-body contributions to intermolecular interactions of the AMOEBA force field using energy decomposition analysis of electronic structure calculations
journal, October 2017
- Demerdash, Omar; Mao, Yuezhi; Liu, Tianyi
- The Journal of Chemical Physics, Vol. 147, Issue 16
Force Field Benchmark of Organic Liquids: Density, Enthalpy of Vaporization, Heat Capacities, Surface Tension, Isothermal Compressibility, Volumetric Expansion Coefficient, and Dielectric Constant
journal, December 2011
- Caleman, Carl; van Maaren, Paul J.; Hong, Minyan
- Journal of Chemical Theory and Computation, Vol. 8, Issue 1
Electrostatic energy in the effective fragment potential method: Theory and application to benzene dimer
journal, January 2006
- Slipchenko, Lyudmila V.; Gordon, Mark S.
- Journal of Computational Chemistry, Vol. 28, Issue 1
How good are polarizable and flexible models for water: Insights from a many-body perspective
journal, August 2020
- Lambros, Eleftherios; Paesani, Francesco
- The Journal of Chemical Physics, Vol. 153, Issue 6
Water Pair and Three-Body Potential of Spectroscopic Quality from Ab Initio Calculations
journal, May 2000
- Groenenboom, G. C.; Mas, E. M.; Bukowski, R.
- Physical Review Letters, Vol. 84, Issue 18
The influence of water potential in simulation: a catabolite activator protein case study
journal, July 2019
- Liem, Steven Y.; Popelier, Paul L. A.
- Journal of Molecular Modeling, Vol. 25, Issue 8
New intermolecular energy calculation scheme: applications to potential surface and liquid properties of water
journal, February 1990
- Wallqvist, A.; Ahlstroem, P.; Karlstroem, G.
- The Journal of Physical Chemistry, Vol. 94, Issue 4
Transition structures for the interchange of hydrogen atoms within the water dimer
journal, January 1990
- Smith, Brian J.; Swanton, David J.; Pople, John A.
- The Journal of Chemical Physics, Vol. 92, Issue 2
Many-body effects of dispersion interaction
journal, August 2006
- Donchev, A. G.
- The Journal of Chemical Physics, Vol. 125, Issue 7
Comparison of simple potential functions for simulating liquid water
journal, July 1983
- Jorgensen, William L.; Chandrasekhar, Jayaraman; Madura, Jeffry D.
- The Journal of Chemical Physics, Vol. 79, Issue 2
Intermolecular forces in simple systems
journal, January 1977
- Ahlrichs, R.; Penco, R.; Scoles, G.
- Chemical Physics, Vol. 19, Issue 2
QM/MM Simulations with the Gaussian Electrostatic Model: A Density-based Polarizable Potential
journal, May 2018
- Gökcan, Hatice; Kratz, Eric; Darden, Thomas A.
- The Journal of Physical Chemistry Letters, Vol. 9, Issue 11
Physical Molecular Mechanics Method for Damped Dispersion
journal, April 2017
- Verma, Pragya; Wang, Bo; Fernandez, Laura E.
- The Journal of Physical Chemistry A, Vol. 121, Issue 14
Many-Body Effects in Intermolecular Forces
journal, November 1994
- Elrod, Matthew J.; Saykally, Richard J.
- Chemical Reviews, Vol. 94, Issue 7
Testing the quality of some recent water–water potentials
journal, February 2003
- van Duijneveldt-van de Rijdt, J. G. C. M.; Mooij, W. T. M.; van Duijneveldt, F. B.
- Physical Chemistry Chemical Physics, Vol. 5, Issue 6
Development of a simple, self-consistent polarizable model for liquid water
journal, January 2003
- Yu, Haibo; Hansson, Tomas; van Gunsteren, Wilfred F.
- The Journal of Chemical Physics, Vol. 118, Issue 1
General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
journal, May 2015
- Wang, Qiantao; Rackers, Joshua A.; He, Chenfeng
- Journal of Chemical Theory and Computation, Vol. 11, Issue 6
International Tables of the Surface Tension of Water
journal, July 1983
- Vargaftik, N. B.; Volkov, B. N.; Voljak, L. D.
- Journal of Physical and Chemical Reference Data, Vol. 12, Issue 3
Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field
journal, December 2003
- Grossfield, Alan; Ren, Pengyu; Ponder, Jay W.
- Journal of the American Chemical Society, Vol. 125, Issue 50
Perturbation Theory Approach to Intermolecular Potential Energy Surfaces of van der Waals Complexes
journal, November 1994
- Jeziorski, Bogumil; Moszynski, Robert; Szalewicz, Krzysztof
- Chemical Reviews, Vol. 94, Issue 7
Long-range corrected hybrid density functionals with damped atom–atom dispersion corrections
journal, January 2008
- Chai, Jeng-Da; Head-Gordon, Martin
- Physical Chemistry Chemical Physics, Vol. 10, Issue 44
Screened Electrostatic Interactions in Molecular Mechanics
journal, September 2014
- Wang, Bo; Truhlar, Donald G.
- Journal of Chemical Theory and Computation, Vol. 10, Issue 10
Effect of the damping function in dispersion corrected density functional theory
journal, March 2011
- Grimme, Stefan; Ehrlich, Stephan; Goerigk, Lars
- Journal of Computational Chemistry, Vol. 32, Issue 7
Ab initio theory and modeling of water
journal, September 2017
- Chen, Mohan; Ko, Hsin-Yu; Remsing, Richard C.
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 41
Online complete basis set limit extrapolation calculator
journal, September 2017
- Vasilyev, Vladislav
- Computational and Theoretical Chemistry, Vol. 1115
Including Charge Penetration Effects in Molecular Modeling
journal, October 2010
- Wang, Bo; Truhlar, Donald G.
- Journal of Chemical Theory and Computation, Vol. 6, Issue 11
The structure of water around the compressibility minimum
journal, December 2014
- Skinner, L. B.; Benmore, C. J.; Neuefeind, J. C.
- The Journal of Chemical Physics, Vol. 141, Issue 21
Simple Liquid Models with Corrected Dielectric Constants
journal, March 2012
- Fennell, Christopher J.; Li, Libo; Dill, Ken A.
- The Journal of Physical Chemistry B, Vol. 116, Issue 23
Canonical sampling through velocity rescaling
journal, January 2007
- Bussi, Giovanni; Donadio, Davide; Parrinello, Michele
- The Journal of Chemical Physics, Vol. 126, Issue 1
Improved simulation of liquid water by molecular dynamics
journal, February 1974
- Stillinger, Frank H.; Rahman, Aneesur
- The Journal of Chemical Physics, Vol. 60, Issue 4
Quantum and statistical mechanical studies of liquids. 10. Transferable intermolecular potential functions for water, alcohols, and ethers. Application to liquid water
journal, January 1981
- Jorgensen, William L.
- Journal of the American Chemical Society, Vol. 103, Issue 2
Sixteen Thousand Evaluated Experimental Thermodynamic Property Data for Water and Steam
journal, September 1991
- Sato, H.; Watanabe, K.; Levelt Sengers, J. M. H.
- Journal of Physical and Chemical Reference Data, Vol. 20, Issue 5
Development of transferable interaction potentials for water. V. Extension of the flexible, polarizable, Thole-type model potential ( TTM3-F , v. 3.0) to describe the vibrational spectra of water clusters and liquid water
journal, February 2008
- Fanourgakis, George S.; Xantheas, Sotiris S.
- The Journal of Chemical Physics, Vol. 128, Issue 7
Comment on “On the importance of the fragment relaxation energy terms in the estimation of the basis set superposition error correction to the intermolecular interaction energy” [J. Chem. Phys. 104 , 8821 (1996)]
journal, July 1998
- Szalewicz, Krzysztof; Jeziorski, Bogumil
- The Journal of Chemical Physics, Vol. 109, Issue 3
A physically grounded damped dispersion model with particle mesh Ewald summation
journal, August 2018
- Rackers, Joshua A.; Liu, Chengwen; Ren, Pengyu
- The Journal of Chemical Physics, Vol. 149, Issue 8
System-Size Dependence of Diffusion Coefficients and Viscosities from Molecular Dynamics Simulations with Periodic Boundary Conditions
journal, October 2004
- Yeh, In-Chul; Hummer, Gerhard
- The Journal of Physical Chemistry B, Vol. 108, Issue 40
Simulation of Ca 2+ and Mg 2+ Solvation Using Polarizable Atomic Multipole Potential
journal, September 2006
- Jiao, Dian; King, Christopher; Grossfield, Alan
- The Journal of Physical Chemistry B, Vol. 110, Issue 37
Polarizable Water Model for the Coarse-Grained MARTINI Force Field
journal, June 2010
- Yesylevskyy, Semen O.; Schäfer, Lars V.; Sengupta, Durba
- PLoS Computational Biology, Vol. 6, Issue 6
Energy of Interaction between Two Molecules
journal, April 1966
- Musher, Jeremy I.; Salem, Lionel
- The Journal of Chemical Physics, Vol. 44, Issue 8
CCSD(T) Complete Basis Set Limit Relative Energies for Low-Lying Water Hexamer Structures
journal, April 2009
- Bates, Desiree M.; Tschumper, Gregory S.
- The Journal of Physical Chemistry A, Vol. 113, Issue 15
Towards a force field based on density fitting
journal, March 2006
- Piquemal, Jean-Philip; Cisneros, G. Andrés; Reinhardt, Peter
- The Journal of Chemical Physics, Vol. 124, Issue 10
Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate 1H NMR PFG measurements
journal, January 2000
- Holz, Manfred; Heil, Stefan R.; Sacco, Antonio
- Physical Chemistry Chemical Physics, Vol. 2, Issue 20
Many-body exchange-repulsion in polarizable molecular mechanics. I. orbital-based approximations and applications to hydrated metal cation complexes
journal, July 2011
- Chaudret, Robin; Gresh, Nohad; Parisel, Olivier
- Journal of Computational Chemistry, Vol. 32, Issue 14
Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew
journal, May 2004
- Horn, Hans W.; Swope, William C.; Pitera, Jed W.
- The Journal of Chemical Physics, Vol. 120, Issue 20
Density functional theory with London dispersion corrections: Density functional theory with London dispersion corrections
journal, March 2011
- Grimme, Stefan
- Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 1, Issue 2
Tinker‐OpenMM: Absolute and relative alchemical free energies using AMOEBA on GPUs
journal, June 2017
- Harger, Matthew; Li, Daniel; Wang, Zhi
- Journal of Computational Chemistry, Vol. 38, Issue 23
Extended MARTINI water model for heat transfer studies
journal, November 2019
- Yesudasan, Sumith
- Molecular Physics, Vol. 118, Issue 13
An improved simple model for the van der Waals potential based on universal damping functions for the dispersion coefficients
journal, April 1984
- Tang, K. T.; Toennies, J. Peter
- The Journal of Chemical Physics, Vol. 80, Issue 8
Anchoring the water dimer potential energy surface with explicitly correlated computations and focal point analyses
journal, January 2002
- Tschumper, Gregory S.; Leininger, Matthew L.; Hoffman, Brian C.
- The Journal of Chemical Physics, Vol. 116, Issue 2
An accurate and efficient computational protocol for obtaining the complete basis set limits of the binding energies of water clusters at the MP2 and CCSD(T) levels of theory: Application to (H 2 O) m , m = 2-6, 8, 11, 16, and 17
journal, June 2015
- Miliordos, Evangelos; Xantheas, Sotiris S.
- The Journal of Chemical Physics, Vol. 142, Issue 23
Towards scalable and accurate molecular dynamics using the SIBFA polarizable force field
conference, January 2017
- Lagardère, Louis; El-Khoury, Léa; Naseem-Khan, Sehr
- PROCEEDINGS OF THE INTERNATIONAL CONFERENCE OF COMPUTATIONAL METHODS IN SCIENCES AND ENGINEERING 2017 (ICCMSE-2017), AIP Conference Proceedings
Building Force Fields: An Automatic, Systematic, and Reproducible Approach
journal, May 2014
- Wang, Lee-Ping; Martinez, Todd J.; Pande, Vijay S.
- The Journal of Physical Chemistry Letters, Vol. 5, Issue 11
Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules
journal, August 2011
- Ren, Pengyu; Wu, Chuanjie; Ponder, Jay W.
- Journal of Chemical Theory and Computation, Vol. 7, Issue 10
Density, thermal expansivity, and compressibility of liquid water from 0.deg. to 150.deg.. Correlations and tables for atmospheric pressure and saturation reviewed and expressed on 1968 temperature scale
journal, January 1975
- Kell, George S.
- Journal of Chemical & Engineering Data, Vol. 20, Issue 1
Test-area simulation method for the direct determination of the interfacial tension of systems with continuous or discontinuous potentials
journal, October 2005
- Gloor, Guy J.; Jackson, George; Blas, Felipe J.
- The Journal of Chemical Physics, Vol. 123, Issue 13
Symmetry-adapted perturbation theory of intermolecular forces: Symmetry-adapted perturbation theory
journal, August 2011
- Szalewicz, Krzysztof
- Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 2, Issue 2
Systematic Parametrization of Polarizable Force Fields from Quantum Chemistry Data
journal, November 2012
- Wang, Lee-Ping; Chen, Jiahao; Van Voorhis, Troy
- Journal of Chemical Theory and Computation, Vol. 9, Issue 1
Calibration and Testing of a Water Model for Simulation of the Molecular Dynamics of Proteins and Nucleic Acids in Solution
journal, June 1997
- Levitt, Michael; Hirshberg, Miriam; Sharon, Ruth
- The Journal of Physical Chemistry B, Vol. 101, Issue 25
Convergence of Intermolecular Force Series
journal, April 1952
- Brooks, Franklin C.
- Physical Review, Vol. 86, Issue 1
Development of a “First Principles” Water Potential with Flexible Monomers: Dimer Potential Energy Surface, VRT Spectrum, and Second Virial Coefficient
journal, November 2013
- Babin, Volodymyr; Leforestier, Claude; Paesani, Francesco
- Journal of Chemical Theory and Computation, Vol. 9, Issue 12
Molecular mechanics. The MM3 force field for hydrocarbons. 1
journal, November 1989
- Allinger, Norman L.; Yuh, Young H.; Lii, Jenn Huei
- Journal of the American Chemical Society, Vol. 111, Issue 23
Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model
journal, September 2014
- Laury, Marie L.; Wang, Lee-Ping; Pande, Vijay S.
- The Journal of Physical Chemistry B, Vol. 119, Issue 29
A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions
journal, May 2000
- Mahoney, Michael W.; Jorgensen, William L.
- The Journal of Chemical Physics, Vol. 112, Issue 20
A Theory of Water and Ionic Solution, with Particular Reference to Hydrogen and Hydroxyl Ions
journal, August 1933
- Bernal, J. D.; Fowler, R. H.
- The Journal of Chemical Physics, Vol. 1, Issue 8
Pushing the Limit of Molecular Dynamics with Ab Initio Accuracy to 100 Million Atoms with Machine Learning
conference, November 2020
- Jia, Weile; Wang, Han; Chen, Mohan
- SC20: International Conference for High Performance Computing, Networking, Storage and Analysis
Family of Oxygen–Oxygen Radial Distribution Functions for Water
journal, July 2015
- Brookes, David H.; Head-Gordon, Teresa
- The Journal of Physical Chemistry Letters, Vol. 6, Issue 15
Accurate Molecular Van Der Waals Interactions from Ground-State Electron Density and Free-Atom Reference Data
journal, February 2009
- Tkatchenko, Alexandre; Scheffler, Matthias
- Physical Review Letters, Vol. 102, Issue 7
Geometry-dependent atomic charges: Methodology and application to alkanes, aldehydes, ketones, and amides
journal, February 1995
- Dinur, U.; Hagler, A. T.
- Journal of Computational Chemistry, Vol. 16, Issue 2
Generalization of the Gaussian electrostatic model: Extension to arbitrary angular momentum, distributed multipoles, and speedup with reciprocal space methods
journal, November 2006
- Cisneros, G. Andrés; Piquemal, Jean-Philip; Darden, Thomas A.
- The Journal of Chemical Physics, Vol. 125, Issue 18
A supervised fitting approach to force field parametrization with application to the SIBFA polarizable force field
journal, June 2014
- Devereux, Mike; Gresh, Nohad; Piquemal, Jean-Philip
- Journal of Computational Chemistry, Vol. 35, Issue 21
The IAPWS Formulation 1995 for the Thermodynamic Properties of Ordinary Water Substance for General and Scientific Use
journal, June 2002
- Wagner, W.; Pruß, A.
- Journal of Physical and Chemical Reference Data, Vol. 31, Issue 2
On the accuracy of the MB-pol many-body potential for water: Interaction energies, vibrational frequencies, and classical thermodynamic and dynamical properties from clusters to liquid water and ice
journal, November 2016
- Reddy, Sandeep K.; Straight, Shelby C.; Bajaj, Pushp
- The Journal of Chemical Physics, Vol. 145, Issue 19
Charge Transfer from Regularized Symmetry-Adapted Perturbation Theory
journal, November 2013
- Misquitta, Alston J.
- Journal of Chemical Theory and Computation, Vol. 9, Issue 12
Self-diffusion in normal and heavy water in the range 1-45.deg.
journal, March 1973
- Mills, R.
- The Journal of Physical Chemistry, Vol. 77, Issue 5
Six-site polarizable model of water based on the classical Drude oscillator
journal, January 2013
- Yu, Wenbo; Lopes, Pedro E. M.; Roux, Benoît
- The Journal of Chemical Physics, Vol. 138, Issue 3
Towards an ab initio flexible potential for water, and post-harmonic quantum vibrational analysis of water clusters
journal, May 2010
- Wang, Yimin; Bowman, Joel M.
- Chemical Physics Letters, Vol. 491, Issue 1-3
Toward a Separate Reproduction of the Contributions to the Hartree−Fock and DFT Intermolecular Interaction Energies by Polarizable Molecular Mechanics with the SIBFA Potential
journal, March 2007
- Piquemal, Jean-Philip; Chevreau, Hilaire; Gresh, Nohad
- Journal of Chemical Theory and Computation, Vol. 3, Issue 3
Evaluation of charge penetration between distributed multipolar expansions
journal, May 2000
- Freitag, Mark A.; Gordon, Mark S.; Jensen, Jan H.
- The Journal of Chemical Physics, Vol. 112, Issue 17
Surface Tension of Supercooled Water Determined by Using a Counterpressure Capillary Rise Method
journal, April 2015
- Vinš, Václav; Fransen, Maurice; Hykl, Jiří
- The Journal of Physical Chemistry B, Vol. 119, Issue 17
Towards an accurate intermolecular potential for water
journal, October 1992
- Millot, Claude; Stone, Anthony
- Molecular Physics, Vol. 77, Issue 3
A polarizable, charge transfer model of water using the drude oscillator: Influence of Charge Transfer on the Drude Oscillator
journal, June 2016
- Rick, Steven W.
- Journal of Computational Chemistry, Vol. 37, Issue 22
Tinker 8: Software Tools for Molecular Design
journal, August 2018
- Rackers, Joshua A.; Wang, Zhi; Lu, Chao
- Journal of Chemical Theory and Computation, Vol. 14, Issue 10
Development of an AMOEBA water model using GEM distributed multipoles
journal, August 2015
- Torabifard, Hedieh; Starovoytov, Oleg N.; Ren, Pengyu
- Theoretical Chemistry Accounts, Vol. 134, Issue 8
The Radial Distribution Functions of Water as Derived from Radiation Total Scattering Experiments: Is There Anything We Can Say for Sure?
journal, January 2013
- Soper, A. K.
- ISRN Physical Chemistry, Vol. 2013
GEM*: A Molecular Electronic Density-Based Force Field for Molecular Dynamics Simulations
journal, March 2014
- Duke, Robert E.; Starovoytov, Oleg N.; Piquemal, Jean-Philip
- Journal of Chemical Theory and Computation, Vol. 10, Issue 4
Classical Pauli repulsion: An anisotropic, atomic multipole model
journal, February 2019
- Rackers, Joshua A.; Ponder, Jay W.
- The Journal of Chemical Physics, Vol. 150, Issue 8
An efficient algorithm for multipole energies and derivatives based on spherical harmonics and extensions to particle mesh Ewald
journal, May 2014
- Simmonett, Andrew C.; Pickard, Frank C.; Schaefer, Henry F.
- The Journal of Chemical Physics, Vol. 140, Issue 18
The Statistical Mechanical Theory of Surface Tension
journal, March 1949
- Kirkwood, John G.; Buff, Frank P.
- The Journal of Chemical Physics, Vol. 17, Issue 3
Accurate and Efficient Method for Many-Body van der Waals Interactions
journal, June 2012
- Tkatchenko, Alexandre; DiStasio, Robert A.; Car, Roberto
- Physical Review Letters, Vol. 108, Issue 23
An approximate formula for the intermolecular Pauli repulsion between closed shell molecules
journal, December 1996
- Jensen, Jan; Gordon, Mark
- Molecular Physics, Vol. 89, Issue 5
Benchmarking DFT and semiempirical methods on structures and lattice energies for ten ice polymorphs
journal, March 2015
- Brandenburg, Jan Gerit; Maas, Tilo; Grimme, Stefan
- The Journal of Chemical Physics, Vol. 142, Issue 12
Empirical correction to density functional theory for van der Waals interactions
journal, January 2002
- Wu, Qin; Yang, Weitao
- The Journal of Chemical Physics, Vol. 116, Issue 2
Accurate modeling of the intramolecular electrostatic energy of proteins
journal, July 1995
- Dudek, Michael J.; Ponder, Jay W.
- Journal of Computational Chemistry, Vol. 16, Issue 7
Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles
journal, January 2016
- Narth, Christophe; Lagardère, Louis; Polack, Étienne
- Journal of Computational Chemistry, Vol. 37, Issue 5
Competing quantum effects in the dynamics of a flexible water model
journal, July 2009
- Habershon, Scott; Markland, Thomas E.; Manolopoulos, David E.
- The Journal of Chemical Physics, Vol. 131, Issue 2
Two-centre integrals occurring in the theory of molecular structure
journal, April 1942
- Coulson, C. A.
- Mathematical Proceedings of the Cambridge Philosophical Society, Vol. 38, Issue 2
Implementation of Geometry-Dependent Charge Flux into the Polarizable AMOEBA+ Potential
journal, December 2019
- Liu, Chengwen; Piquemal, Jean-Philip; Ren, Pengyu
- The Journal of Physical Chemistry Letters, Vol. 11, Issue 2
Many-Body Dispersion Interactions in Molecular Crystal Polymorphism
journal, May 2013
- Marom, Noa; DiStasio, Robert A.; Atalla, Viktor
- Angewandte Chemie International Edition, Vol. 52, Issue 26
An approximate formula for the intermolecular Pauli repulsion between closed shell molecules. II. Application to the effective fragment potential method
journal, March 1998
- Jensen, Jan H.; Gordon, Mark S.
- The Journal of Chemical Physics, Vol. 108, Issue 12
A post-Hartree–Fock model of intermolecular interactions
journal, July 2005
- Johnson, Erin R.; Becke, Axel D.
- The Journal of Chemical Physics, Vol. 123, Issue 2
Energetics of Zn2+ binding to a series of biologically relevant ligands: A molecular mechanics investigation grounded onab initio self-consistent field supermolecular computations
journal, July 1995
- Gresh, Nohad
- Journal of Computational Chemistry, Vol. 16, Issue 7
The bend angle of water in ice Ih and liquid water: The significance of implementing the nonlinear monomer dipole moment surface in classical interaction potentials
journal, May 2006
- Fanourgakis, George S.; Xantheas, Sotiris S.
- The Journal of Chemical Physics, Vol. 124, Issue 17
Damping functions in the effective fragment potential method
journal, April 2009
- Slipchenko†, Lyudmila V.; Gordon, Mark S.
- Molecular Physics, Vol. 107, Issue 8-12
Intermolecular Forces in the Region of Small Orbital Overlap
journal, March 1967
- Murrell, J. N.; Shaw, G.
- The Journal of Chemical Physics, Vol. 46, Issue 5