NO way to live; the various roles of nitric oxide in plant–pathogen interactions
|
journal
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December 2005 |
The Ecological Role of Type Three Secretion Systems in the Interaction of Bacteria with Fungi in Soil and Related Habitats Is Diverse and Context-Dependent
|
journal
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January 2017 |
Salicylic Acid Inhibits Pathogen Growth in Plants through Repression of the Auxin Signaling Pathway
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journal
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October 2007 |
Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil
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journal
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May 2014 |
Host-linked soil viral ecology along a permafrost thaw gradient
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journal
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July 2018 |
Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
|
journal
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October 2018 |
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
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journal
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August 2012 |
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
|
journal
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May 2018 |
Mechanisms of action of plant growth promoting bacteria
|
journal
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October 2017 |
A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses
|
journal
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December 2015 |
InterProScan - an integration platform for the signature-recognition methods in InterPro
|
journal
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September 2001 |
Rhizosphere Carbon Turnover from Cradle to Grave: The Role of Microbe–Plant Interactions
|
book
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August 2020 |
Effect of mechanical damage on vigor, physiological parameters, and susceptibility of oat (Avena sativa) to Fusarium culmorum infection
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journal
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September 2011 |
Who's your neighbor? New computational approaches for functional genomics
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journal
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June 2000 |
Microbial extracellular polysaccharide production and aggregate stability controlled by switchgrass (Panicum virgatum) root biomass and soil water potential
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journal
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April 2020 |
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups
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journal
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June 2012 |
Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients: Quantitative analysis of SIP gradients
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journal
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December 2003 |
Biochemistry and genetics of ACC deaminase: a weapon to “stress ethylene” produced in plants
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journal
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September 2015 |
Strong succession in arbuscular mycorrhizal fungal communities
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journal
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August 2018 |
Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil: Ciliate diversity in soils
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journal
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December 2007 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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journal
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March 2010 |
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
|
journal
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January 2015 |
VirSorter: mining viral signal from microbial genomic data
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journal
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January 2015 |
Graph Clustering Via a Discrete Uncoupling Process
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journal
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January 2008 |
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
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journal
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June 2011 |
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
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journal
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April 2017 |
Mechanisms underlying beneficial plant–fungus interactions in mycorrhizal symbiosis
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journal
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July 2010 |
Notes on Methods for the Extraction of Small Soil Arthropods
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journal
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May 1953 |
Quantitative Microbial Ecology through Stable Isotope Probing
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journal
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August 2015 |
KEGG: Kyoto Encyclopedia of Genes and Genomes
|
journal
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January 1999 |
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
|
journal
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January 2013 |
Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
|
journal
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November 2019 |
Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons
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journal
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August 2015 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
|
journal
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January 2014 |
New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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journal
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July 2018 |
Stable isotope probing of bacterial community structure and gene expression in the rhizosphere of Arabidopsis thaliana
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journal
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March 2012 |
Microbial Phosphorus Solubilization and Its Potential for Use in Sustainable Agriculture
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journal
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June 2017 |
Migratory Response of Soil Bacteria to Lyophyllum sp. Strain Karsten in Soil Microcosms
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journal
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March 2009 |
Predicting Protein Function by Genomic Context: Quantitative Evaluation and Qualitative Inferences
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journal
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August 2000 |
CRISPRDetect: A flexible algorithm to define CRISPR arrays
|
journal
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May 2016 |
Temporal changes of bacterial communities in the Tuber melanosporum ectomycorrhizosphere during ascocarp development
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journal
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January 2016 |
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
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journal
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March 2015 |
Heterotrophic growth of cyanobacteria and phage-mediated microbial loop in soil: Examination by stable isotope probing (SIP) method
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journal
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April 2012 |
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
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conference
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November 2010 |
UniProt Knowledgebase: a hub of integrated protein data
|
journal
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January 2011 |
Structure and function of the global topsoil microbiome
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journal
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August 2018 |
Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design
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journal
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August 2020 |
Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon
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journal
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July 2018 |
Stable-isotope probing and metagenomics reveal predation by protozoa drives E. coli removal in slow sand filters
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journal
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October 2014 |
Characterization of an Insecticidal Toxin and Pathogenicity of Pseudomonas taiwanensis against Insects
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journal
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August 2014 |
HMMER web server: interactive sequence similarity searching
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journal
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May 2011 |
A global atlas of the dominant bacteria found in soil
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journal
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January 2018 |
Nematicidal Bacteria Associated to Pinewood Nematode Produce Extracellular Proteases
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journal
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November 2013 |
A Versatile Sample Processing Workflow for Metagenomic Pathogen Detection
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journal
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August 2018 |
Steady-state dissolution kinetics of mineral ferric phosphate in the presence of desferrioxamine-B and oxalate ligands at pH=4–6 and T=24±0.6°C
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journal
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August 2012 |
Diverse effect of phosphatidylcholine biosynthetic genes on phospholipid homeostasis, cell autophagy and fungal developments in Metarhizium robertsii: PC biosynthetic genes effect fungal physiology
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journal
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December 2017 |
Bacterial volatiles promote growth in Arabidopsis
|
journal
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April 2003 |
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
|
journal
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April 2012 |
Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone
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journal
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January 2016 |
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
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journal
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February 2015 |
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
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journal
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October 2016 |
Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda
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journal
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June 2015 |
Disentangling carbon flow across microbial kingdoms in the rhizosphere of maize
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journal
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July 2019 |
UniRef: comprehensive and non-redundant UniProt reference clusters
|
journal
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March 2007 |
Stable isotope labeling confirms mixotrophic nature of streamer biofilm communities at alkaline hot springs
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journal
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February 2015 |
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO 2 concentrations : Genomic resolution of a high-CO
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journal
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July 2016 |
Quantitative Analysis of Lysobacter Predation
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journal
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July 2015 |
GC–MS SPME profiling of rhizobacterial volatiles reveals prospective inducers of growth promotion and induced systemic resistance in plants
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journal
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October 2006 |
Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
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journal
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February 2014 |
Off the hook – how bacteria survive protozoan grazing
|
journal
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July 2005 |
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
|
journal
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March 1997 |
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
|
journal
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January 2018 |
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
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journal
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May 2012 |
Estimating taxon‐specific population dynamics in diverse microbial communities
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journal
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January 2018 |
Bacterial quorum sensing and nitrogen cycling in rhizosphere soil: Bacterial QS and rhizosphere nitrogen cycling
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journal
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November 2008 |
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
|
journal
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October 2015 |
Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism
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journal
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April 2016 |
RNA-Based Stable Isotope Probing Suggests Allobaculum spp. as Particularly Active Glucose Assimilators in a Complex Murine Microbiota Cultured In Vitro
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journal
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January 2017 |
Search and clustering orders of magnitude faster than BLAST
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journal
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August 2010 |
Incorporation of plant residue-derived carbon into the microeukaryotic community in a rice field soil revealed by DNA stable-isotope probing
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journal
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November 2011 |
Responses of soil microeukaryotic communities to short-term fumigation-incubation revealed by MiSeq amplicon sequencing
|
journal
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October 2015 |
A high-efficiency, “low-technology” Tullgren-type extractor for soil microarthropods
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journal
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February 1991 |
Bacterial Secretion Systems: An Overview
|
journal
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February 2016 |
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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journal
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May 2018 |
Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes
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journal
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June 2016 |
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
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journal
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April 2016 |
Niche differentiation is spatially and temporally regulated in the rhizosphere
|
journal
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January 2020 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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journal
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April 2012 |
Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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journal
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June 2018 |
Adhesins Involved in Attachment to Abiotic Surfaces by Gram-Negative Bacteria
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journal
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August 2015 |
Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
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journal
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May 2019 |
Using stable isotopes to explore root-microbe-mineral interactions in soil
|
journal
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June 2017 |
Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing: RNA-SIP of human microbiota
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journal
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April 2007 |
A View to a Kill: The Bacterial Type VI Secretion System
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journal
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January 2014 |
Fast gapped-read alignment with Bowtie 2
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journal
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March 2012 |
Rhizosphere bacterial communities of dominant steppe plants shift in response to a gradient of simulated nitrogen deposition
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journal
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August 2015 |
Increased plant productivity and decreased microbial respiratory C loss by plant growth-promoting rhizobacteria under elevated CO2
|
journal
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March 2015 |
Investigation of the microbial metabolism of carbon dioxide and hydrogen in the kangaroo foregut by stable isotope probing
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journal
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March 2014 |
The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria
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journal
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April 2017 |
Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
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journal
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September 2018 |
Control of Glucosylceramide Production and Morphogenesis by the Bar1 Ceramide Synthase in Fusarium graminearum
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journal
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April 2011 |
Metagenomic Analysis of the Bacterial Community Associated with the Taproot of Sugar Beet
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journal
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January 2015 |
Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis
|
journal
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April 2016 |
Elevated Abundance of Bacteriophage Infecting Bacteria in Soil
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journal
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January 2003 |
Microbial community assembly differs across minerals in a rhizosphere microcosm
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journal
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September 2018 |