Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs
Abstract
Structural studies of challenging targets such as G protein-coupled receptors (GPCRs) have accelerated during the last several years due to the development of new approaches, including small-wedge and serial crystallography. Here, we describe the deposition of seven datasets consisting of X-ray diffraction images acquired from lipidic cubic phase (LCP) grown microcrystals of two human GPCRs, Cysteinyl leukotriene receptors 1 and 2 (CysLT1R and CysLT2R), in complex with various antagonists. Five datasets were collected using small-wedge synchrotron crystallography (SWSX) at the European Synchrotron Radiation Facility with multiple crystals under cryo-conditions. Two datasets were collected using X-ray free electron laser (XFEL) serial femtosecond crystallography (SFX) at the Linac Coherent Light Source, with microcrystals delivered at room temperature into the beam within LCP matrix by a viscous media microextrusion injector. All seven datasets have been deposited in the open-access databases Zenodo and CXIDB. Here, we describe sample preparation and annotate crystallization conditions for each partial and full datasets. We also document full processing pipelines and provide wrapper scripts for SWSX and SFX data processing. A Correction to this paper has been published: https://doi.org/10.1038/s41597-020-00759-w
- Authors:
-
[1];
[2];
[4];
[2];
[5];
[2];
[6];
[7]
- Moscow Inst. of Physics and Technology, Dolgoprudny (Russian Federation). Research Сenter for Molecular Mechanisms of Aging and Age-related Diseases
- Moscow Inst. of Physics and Technology, Dolgoprudny (Russian Federation). Research Сenter for Molecular Mechanisms of Aging and Age-related Diseases
- Moscow Inst. of Physics and Technology, Dolgoprudny (Russian Federation). Research Сenter for Molecular Mechanisms of Aging and Age-related Diseases; Univ. of Grenoble Alpes, Saint-Martin-d-Heres (France). Institut de Biologie Structurale (IBS); Forschungszentrum Jülich GmbH (Germany). Inst. of Biological Information Processing (IBI-7: Structural Biochemistry). Jülich Center for Structural Biology; RWTH Aachen Univ. (Germany). Inst. of Crystallography
- Moscow Inst. of Physics and Technology, Dolgoprudny (Russian Federation). Research Сenter for Molecular Mechanisms of Aging and Age-related Diseases; Forschungszentrum Jülich GmbH (Germany). Inst. of Biological Information Processing (IBI-7: Structural Biochemistry). Jülich Center for Structural Biology; RWTH Aachen Univ. (Germany). Inst. of Crystallography
- Univ. of Grenoble Alpes, Saint-Martin-d-Heres (France). Institut de Biologie Structurale (IBS); Forschungszentrum Jülich GmbH (Germany). Inst. of Biological Information Processing (IBI-7: Structural Biochemistry); Czech Academy of Science, Prague (Czech Republic). Inst. of Physics
- Moscow Inst. of Physics and Technology, Dolgoprudny (Russian Federation). Research Сenter for Molecular Mechanisms of Aging and Age-related Diseases; Univ. of Southern California, Los Angeles, CA (United States). Michelson Center for Convergent Bioscience. Bridge Inst. Dept. of Chemistry
- Moscow Inst. of Physics and Technology, Dolgoprudny (Russian Federation). Research Сenter for Molecular Mechanisms of Aging and Age-related Diseases; Forschungszentrum Jülich GmbH (Germany). Inst. of Biological Information Processing (IBI-7: Structural Biochemistry). Jülich Center for Structural Biology
- Publication Date:
- Research Org.:
- SLAC National Accelerator Lab., Menlo Park, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities Division
- OSTI Identifier:
- 1817090
- Grant/Contract Number:
- AC02-76SF00515
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Scientific Data
- Additional Journal Information:
- Journal Volume: 7; Journal Issue: 1; Journal ID: ISSN 2052-4463
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 97 MATHEMATICS AND COMPUTING; Data publication and archiving; Nanocrystallography
Citation Formats
Marin, Egor, Luginina, Aleksandra, Gusach, Anastasiia, Kovalev, Kirill, Bukhdruker, Sergey, Khorn, Polina, Polovinkin, Vitaly, Lyapina, Elizaveta, Rogachev, Andrey, Gordeliy, Valentin, Mishin, Alexey, Cherezov, Vadim, and Borshchevskiy, Valentin. Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs. United States: N. p., 2020.
Web. doi:10.1038/s41597-020-00729-2.
Marin, Egor, Luginina, Aleksandra, Gusach, Anastasiia, Kovalev, Kirill, Bukhdruker, Sergey, Khorn, Polina, Polovinkin, Vitaly, Lyapina, Elizaveta, Rogachev, Andrey, Gordeliy, Valentin, Mishin, Alexey, Cherezov, Vadim, & Borshchevskiy, Valentin. Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs. United States. https://doi.org/10.1038/s41597-020-00729-2
Marin, Egor, Luginina, Aleksandra, Gusach, Anastasiia, Kovalev, Kirill, Bukhdruker, Sergey, Khorn, Polina, Polovinkin, Vitaly, Lyapina, Elizaveta, Rogachev, Andrey, Gordeliy, Valentin, Mishin, Alexey, Cherezov, Vadim, and Borshchevskiy, Valentin. Thu .
"Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs". United States. https://doi.org/10.1038/s41597-020-00729-2. https://www.osti.gov/servlets/purl/1817090.
@article{osti_1817090,
title = {Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs},
author = {Marin, Egor and Luginina, Aleksandra and Gusach, Anastasiia and Kovalev, Kirill and Bukhdruker, Sergey and Khorn, Polina and Polovinkin, Vitaly and Lyapina, Elizaveta and Rogachev, Andrey and Gordeliy, Valentin and Mishin, Alexey and Cherezov, Vadim and Borshchevskiy, Valentin},
abstractNote = {Structural studies of challenging targets such as G protein-coupled receptors (GPCRs) have accelerated during the last several years due to the development of new approaches, including small-wedge and serial crystallography. Here, we describe the deposition of seven datasets consisting of X-ray diffraction images acquired from lipidic cubic phase (LCP) grown microcrystals of two human GPCRs, Cysteinyl leukotriene receptors 1 and 2 (CysLT1R and CysLT2R), in complex with various antagonists. Five datasets were collected using small-wedge synchrotron crystallography (SWSX) at the European Synchrotron Radiation Facility with multiple crystals under cryo-conditions. Two datasets were collected using X-ray free electron laser (XFEL) serial femtosecond crystallography (SFX) at the Linac Coherent Light Source, with microcrystals delivered at room temperature into the beam within LCP matrix by a viscous media microextrusion injector. All seven datasets have been deposited in the open-access databases Zenodo and CXIDB. Here, we describe sample preparation and annotate crystallization conditions for each partial and full datasets. We also document full processing pipelines and provide wrapper scripts for SWSX and SFX data processing. A Correction to this paper has been published: https://doi.org/10.1038/s41597-020-00759-w},
doi = {10.1038/s41597-020-00729-2},
journal = {Scientific Data},
number = 1,
volume = 7,
place = {United States},
year = {Thu Nov 12 00:00:00 EST 2020},
month = {Thu Nov 12 00:00:00 EST 2020}
}
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