Contrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hosts
Abstract
The broad host range of Fusarium virguliforme represents a unique comparative system to identify and define differentially induced responses between an asymptomatic monocot host, maize (Zea mays), and a symptomatic eudicot host, soybean (Glycine max). Using a temporal, comparative transcriptome-based approach, we observed that early gene expression profiles of root tissue from infected maize suggest that pathogen tolerance coincides with the rapid induction of senescence dampening transcriptional regulators, including ANACs (Arabidopsis thaliana NAM/ATAF/CUC protein) and Ethylene-Responsive Factors. In contrast, the expression of senescence-associated processes in soybean was coincident with the appearance of disease symptom development, suggesting pathogen-induced senescence as a key pathway driving pathogen susceptibility in soybean. Based on the analyses described herein, we posit that root senescence is a primary contributing factor underlying colonization and disease progression in symptomatic versus asymptomatic host–fungal interactions. This process also supports the lifestyle and virulence of F. virguliforme during biotrophy to necrotrophy transitions. Further support for this hypothesis lies in comprehensive co-expression and comparative transcriptome analyses, and in total, supports the emerging concept of necrotrophy-activated senescence. We propose that F. virguliforme conditions an environment within symptomatic hosts, which favors susceptibility through transcriptomic reprogramming, and as described herein, the induction of pathways associated withmore »
- Authors:
-
- Michigan State Univ., East Lansing, MI (United States). Dept. of Plant, Soil and Microbial Sciences
- Michigan State Univ., East Lansing, MI (United States). Plant Resilience Inst.; Michigan State Univ., East Lansing, MI (United States). Graduate Program in Genetics and Genome Sciences; Michigan State Univ., East Lansing, MI (United States). Graduate Program in Molecular Plant Sciences
- Michigan State Univ., East Lansing, MI (United States). Graduate Program in Genetics and Genome Sciences; Michigan State Univ., East Lansing, MI (United States). Graduate Program in Molecular Plant Sciences; Michigan State Univ., East Lansing, MI (United States). Dept. of Plant Biology; Michigan State Univ., East Lansing, MI (United States). Dept. of Computational Mathematics, Science, and Engineering
- Michigan State Univ., East Lansing, MI (United States). Dept. of Plant, Soil and Microbial Sciences; Michigan State Univ., East Lansing, MI (United States). Plant Resilience Inst.; Michigan State Univ., East Lansing, MI (United States). Graduate Program in Genetics and Genome Sciences; Michigan State Univ., East Lansing, MI (United States). Graduate Program in Molecular Plant Sciences
- Publication Date:
- Sponsoring Org.:
- USDOE Office of Science (SC); National Institutes of General Medical Sciences; National Science Foundation (NSF)
- OSTI Identifier:
- 1816799
- Grant/Contract Number:
- SC0018409; 1R01GM125743; ISO-1546617; DEB-1655386
- Resource Type:
- Accepted Manuscript
- Journal Name:
- The Plant Cell (Online)
- Additional Journal Information:
- Journal Name: The Plant Cell (Online); Journal Volume: 33; Journal Issue: 2; Journal ID: ISSN 1532-298X
- Publisher:
- American Society of Plant Biologists (ASPB)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Baetsen-Young, Amy, Chen, Huan, Shiu, Shin-Han, and Day, Brad. Contrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hosts. United States: N. p., 2020.
Web. doi:10.1093/plcell/koaa021.
Baetsen-Young, Amy, Chen, Huan, Shiu, Shin-Han, & Day, Brad. Contrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hosts. United States. https://doi.org/10.1093/plcell/koaa021
Baetsen-Young, Amy, Chen, Huan, Shiu, Shin-Han, and Day, Brad. Thu .
"Contrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hosts". United States. https://doi.org/10.1093/plcell/koaa021. https://www.osti.gov/servlets/purl/1816799.
@article{osti_1816799,
title = {Contrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hosts},
author = {Baetsen-Young, Amy and Chen, Huan and Shiu, Shin-Han and Day, Brad},
abstractNote = {The broad host range of Fusarium virguliforme represents a unique comparative system to identify and define differentially induced responses between an asymptomatic monocot host, maize (Zea mays), and a symptomatic eudicot host, soybean (Glycine max). Using a temporal, comparative transcriptome-based approach, we observed that early gene expression profiles of root tissue from infected maize suggest that pathogen tolerance coincides with the rapid induction of senescence dampening transcriptional regulators, including ANACs (Arabidopsis thaliana NAM/ATAF/CUC protein) and Ethylene-Responsive Factors. In contrast, the expression of senescence-associated processes in soybean was coincident with the appearance of disease symptom development, suggesting pathogen-induced senescence as a key pathway driving pathogen susceptibility in soybean. Based on the analyses described herein, we posit that root senescence is a primary contributing factor underlying colonization and disease progression in symptomatic versus asymptomatic host–fungal interactions. This process also supports the lifestyle and virulence of F. virguliforme during biotrophy to necrotrophy transitions. Further support for this hypothesis lies in comprehensive co-expression and comparative transcriptome analyses, and in total, supports the emerging concept of necrotrophy-activated senescence. We propose that F. virguliforme conditions an environment within symptomatic hosts, which favors susceptibility through transcriptomic reprogramming, and as described herein, the induction of pathways associated with senescence during the necrotrophic stage of fungal development.},
doi = {10.1093/plcell/koaa021},
journal = {The Plant Cell (Online)},
number = 2,
volume = 33,
place = {United States},
year = {Thu Dec 03 00:00:00 EST 2020},
month = {Thu Dec 03 00:00:00 EST 2020}
}
Works referenced in this record:
Identification and Characterization of ANAC042 , a Transcription Factor Family Gene Involved in the Regulation of Camalexin Biosynthesis in Arabidopsis
journal, May 2012
- Saga, Hirohisa; Ogawa, Takumi; Kai, Kosuke
- Molecular Plant-Microbe Interactions®, Vol. 25, Issue 5
Nitrogen metabolism meets phytopathology
journal, July 2014
- Fagard, M.; Launay, A.; Clement, G.
- Journal of Experimental Botany, Vol. 65, Issue 19
Transcriptome and Small RNAome Dynamics during a Resistant and Susceptible Interaction between Cucumber and Downy Mildew
journal, March 2016
- Burkhardt, Alyssa; Day, Brad
- The Plant Genome, Vol. 9, Issue 1
Simultaneous Inference in General Parametric Models
journal, June 2008
- Hothorn, Torsten; Bretz, Frank; Westfall, Peter
- Biometrical Journal, Vol. 50, Issue 3
Induction of ethylene inhibits development of soybean sudden death syndrome by inducing defense-related genes and reducing Fusarium virguliforme growth
journal, May 2019
- Abdelsamad, Noor A.; MacIntosh, Gustavo C.; Leandro, Leonor F. S.
- PLOS ONE, Vol. 14, Issue 5
Genome‐wide association and epistasis studies unravel the genetic architecture of sudden death syndrome resistance in soybean
journal, December 2015
- Zhang, Jiaoping; Singh, Arti; Mueller, Daren S.
- The Plant Journal, Vol. 84, Issue 6
The Fusarium Mycotoxin Deoxynivalenol Can Inhibit Plant Apoptosis-Like Programmed Cell Death
journal, July 2013
- Diamond, Mark; Reape, Theresa J.; Rocha, Olga
- PLoS ONE, Vol. 8, Issue 7
Suppression of Soybean Yield Potential in the Continental United States by Plant Diseases from 2006 to 2009
journal, January 2010
- Koenning, Stephen R.; Wrather, J. Allen
- Plant Health Progress, Vol. 11, Issue 1
Trimmomatic: a flexible trimmer for Illumina sequence data
journal, April 2014
- Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern
- Bioinformatics, Vol. 30, Issue 15
Plant leaf senescence and death – regulation by multiple layers of control and implications for aging in general
journal, January 2013
- Woo, Hye Ryun; Kim, Hyo Jung; Nam, Hong Gil
- Journal of Cell Science
Vaccatides: Antifungal Glutamine-Rich Hevein-Like Peptides from Vaccaria hispanica
journal, June 2017
- Wong, Ka H.; Tan, Wei Liang; Kini, Shruthi G.
- Frontiers in Plant Science, Vol. 8
Identification of Multiple Phytotoxins Produced by Fusarium virguliforme Including a Phytotoxic Effector (FvNIS1) Associated With Sudden Death Syndrome Foliar Symptoms
journal, February 2016
- Chang, Hao-Xun; Domier, Leslie L.; Radwan, Osman
- Molecular Plant-Microbe Interactions®, Vol. 29, Issue 2
System-Wide Hypersensitive Response-Associated Transcriptome and Metabolome Reprogramming in Tomato
journal, May 2013
- Etalo, Desalegn W.; Stulemeijer, Iris J. E.; Peter van Esse, H.
- Plant Physiology, Vol. 162, Issue 3
An Age-Dependent Sequence of Physiological Processes Defines Developmental Root Senescence
journal, September 2019
- Liu, Zhaojun; Marella, Chakravarthy B. N.; Hartmann, Anja
- Plant Physiology, Vol. 181, Issue 3
Plant Immunity Is Compartmentalized and Specialized in Roots
journal, November 2018
- Chuberre, Coralie; Plancot, Barbara; Driouich, Azeddine
- Frontiers in Plant Science, Vol. 9
Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage
journal, March 2019
- Li, Zhaowei; Pan, Xinfeng; Guo, Xiaodong
- International Journal of Molecular Sciences, Vol. 20, Issue 5
Pathogen profile update: Fusarium oxysporum
journal, May 2009
- Michielse, Caroline B.; Rep, Martijn
- Molecular Plant Pathology, Vol. 10, Issue 3
Chloroplasts and Plant Immunity: Where Are the Fungal Effectors?
journal, December 2019
- Kretschmer, Matthias; Damoo, Djihane; Djamei, Armin
- Pathogens, Vol. 9, Issue 1
Fitting Linear Mixed-Effects Models Using lme4
journal, January 2015
- Bates, Douglas; Mächler, Martin; Bolker, Ben
- Journal of Statistical Software, Vol. 67, Issue 1
Transcriptome Analysis of Gene Expression Patterns Potentially Associated with Premature Senescence in Nicotiana tabacum L.
journal, November 2018
- Zhao, Zhe; Li, Yifan; Zhao, Songchao
- Molecules, Vol. 23, Issue 11
The Wheat Microbiome Under Four Management Strategies, and Potential for Endophytes in Disease Protection
journal, January 2017
- Gdanetz, Kristi; Trail, Frances
- Phytobiomes Journal, Vol. 1, Issue 3
Hidden Host Plant Associations of Soilborne Fungal Pathogens: An Ecological Perspective
journal, June 2013
- Malcolm, Glenna M.; Kuldau, Gretchen A.; Gugino, Beth K.
- Phytopathology®, Vol. 103, Issue 6
Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum
journal, December 2015
- Lanubile, Alessandra; Muppirala, Usha K.; Severin, Andrew J.
- BMC Genomics, Vol. 16, Issue 1
Control of Jasmonate Biosynthesis and Senescence by miR319 Targets
journal, September 2008
- Schommer, Carla; Palatnik, Javier F.; Aggarwal, Pooja
- PLoS Biology, Vol. 6, Issue 9
Multiscale Embedded Gene Co-expression Network Analysis
journal, November 2015
- Song, Won-Min; Zhang, Bin
- PLOS Computational Biology, Vol. 11, Issue 11
Programmed Cell Death in Development and Defense
journal, January 2001
- Jones, Alan M.
- Plant Physiology, Vol. 125, Issue 1
Genetic dissection of the maize (Zea mays L.) MAMP response
journal, March 2017
- Zhang, Xinye; Valdés-López, Oswaldo; Arellano, Consuelo
- Theoretical and Applied Genetics, Vol. 130, Issue 6
The root endophytic fungus Piriformospora indica requires host cell death for proliferation during mutualistic symbiosis with barley
journal, November 2006
- Deshmukh, S.; Huckelhoven, R.; Schafer, P.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 49
The major pathways of carbohydrate metabolism in the ectomycorrhizal basidiomycete Laccaria bicolor S238N
journal, October 2008
- Deveau, A.; Kohler, A.; Frey-Klett, P.
- New Phytologist, Vol. 180, Issue 2
The Rust Fungus Melampsora larici-populina Expresses a Conserved Genetic Program and Distinct Sets of Secreted Protein Genes During Infection of Its Two Host Plants, Larch and Poplar
journal, July 2018
- Lorrain, Cécile; Marchal, Clémence; Hacquard, Stéphane
- Molecular Plant-Microbe Interactions®, Vol. 31, Issue 7
Regulation of Abscisic Acid Biosynthesis
journal, September 2003
- Xiong, Liming; Zhu, Jian-Kang
- Plant Physiology, Vol. 133, Issue 1
Maize GO Annotation-Methods, Evaluation, and Review (maize-GAMER)
journal, April 2018
- Wimalanathan, Kokulapalan; Friedberg, Iddo; Andorf, Carson M.
- Plant Direct, Vol. 2, Issue 4
Genetic and environmental control of the Verticillium syndrome in Arabidopsis thaliana
journal, November 2010
- Häffner, Eva; Karlovsky, Petr; Diederichsen, Elke
- BMC Plant Biology, Vol. 10, Issue 1
NAC Transcription Factors in Senescence: From Molecular Structure to Function in Crops
journal, July 2015
- Podzimska-Sroka, Dagmara; O'Shea, Charlotte; Gregersen, Per
- Plants, Vol. 4, Issue 3
Induced resistance in maize is based on organ-specific defence responses
journal, February 2013
- Balmer, Dirk; de Papajewski, Daniela Villacres; Planchamp, Chantal
- The Plant Journal, Vol. 74, Issue 2
The roles of ethylene and transcription factors in the regulation of onset of leaf senescence
journal, November 2014
- Koyama, Tomotsugu
- Frontiers in Plant Science, Vol. 5
Comparative Transcriptome Profiling of the Early Response to Magnaporthe oryzae in Durable Resistant vs Susceptible Rice (Oryza sativa L.) Genotypes
journal, December 2012
- Bagnaresi, Paolo; Biselli, Chiara; Orrù, Luigi
- PLoS ONE, Vol. 7, Issue 12
Transcriptional profiling of Zea mays roots reveals roles for jasmonic acid and terpenoids in resistance against Phytophthora cinnamomi
journal, February 2013
- Allardyce, Jane Alisa; Rookes, James Edward; Hussain, Hashmath Inayath
- Functional & Integrative Genomics, Vol. 13, Issue 2
Biotrophy-necrotrophy switch in pathogen evoke differential response in resistant and susceptible sesame involving multiple signaling pathways at different phases
journal, December 2017
- Chowdhury, Supriyo; Basu, Arpita; Kundu, Surekha
- Scientific Reports, Vol. 7, Issue 1
Fusarium oxysporum infection activates the plastidial branch of the terpenoid biosynthesis pathway in flax, leading to increased ABA synthesis
journal, January 2020
- Boba, Aleksandra; Kostyn, Kamil; Kozak, Bartosz
- Planta, Vol. 251, Issue 2
Tanscriptomic Study of the Soybean-Fusarium virguliforme Interaction Revealed a Novel Ankyrin-Repeat Containing Defense Gene, Expression of Whose during Infection Led to Enhanced Resistance to the Fungal Pathogen in Transgenic Soybean Plants
journal, October 2016
- Ngaki, Micheline N.; Wang, Bing; Sahu, Binod B.
- PLOS ONE, Vol. 11, Issue 10
Comparative Transcriptomics Atlases Reveals Different Gene Expression Pattern Related to Fusarium Wilt Disease Resistance and Susceptibility in Two Vernicia Species
journal, December 2016
- Chen, Yicun; Yin, Hengfu; Gao, Ming
- Frontiers in Plant Science, Vol. 7
Nutrition acquisition strategies during fungal infection of plants
journal, January 2007
- Divon, Hege H.; Fluhr, Robert
- FEMS Microbiology Letters, Vol. 266, Issue 1
Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress
journal, November 2006
- Mittler, Ron; Kim, YongSig; Song, Luhua
- FEBS Letters, Vol. 580, Issue 28-29
Plant organ senescence - regulation by manifold pathways
journal, January 2018
- Wojciechowska, N.; Sobieszczuk-Nowicka, E.; Bagniewska-Zadworna, A.
- Plant Biology, Vol. 20, Issue 2
Turnover of Fatty Acids during Natural Senescence of Arabidopsis, Brachypodium , and Switchgrass and in Arabidopsis β- Oxidation Mutants
journal, June 2009
- Yang, Zhenle; Ohlrogge, John B.
- Plant Physiology, Vol. 150, Issue 4
Soybean Response to Sudden Death Syndrome: Inheritance Influenced by Cyst Nematode Resistance in Pyramid × Douglas Progenies
journal, September 1996
- Njiti, V. N.; Shenaut, M. A.; Suttner, R. J.
- Crop Science, Vol. 36, Issue 5
A novel function for a redox-related LEA protein (SAG21/AtLEA5) in root development and biotic stress responses: SAG21/AtLEA5 affects growth and stress responses
journal, August 2011
- Salleh, Faezah Mohd; Evans, Karly; Goodall, Benjamin
- Plant, Cell & Environment, Vol. 35, Issue 2
Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response
journal, February 2006
- Chisholm, Stephen T.; Coaker, Gitta; Day, Brad
- Cell, Vol. 124, Issue 4
VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation in Arabidopsis
journal, April 2010
- Yamaguchi, Masatoshi; Ohtani, Misato; Mitsuda, Nobutaka
- The Plant Cell, Vol. 22, Issue 4
A sorghum NAC gene is associated with variation in biomass properties and yield potential
journal, July 2018
- Xia, Jingnu; Zhao, Yunjun; Burks, Payne
- Plant Direct, Vol. 2, Issue 7
The ‘forma specialis’ issue in Fusarium: A case study in Fusarium solani f. sp. pisi
journal, January 2018
- Šišić, Adnan; Baćanović-Šišić, Jelena; Al-Hatmi, Abdullah M. S.
- Scientific Reports, Vol. 8, Issue 1
Fusarium graminearum: pathogen or endophyte of North American grasses?
journal, November 2017
- Lofgren, Lotus A.; LeBlanc, Nicholas R.; Certano, Amanda K.
- New Phytologist, Vol. 217, Issue 3
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
journal, May 2012
- Yu, Guangchuang; Wang, Li-Gen; Han, Yanyan
- OMICS: A Journal of Integrative Biology, Vol. 16, Issue 5
Genome-Wide Transcriptome Analysis Reveals the Comprehensive Response of Two Susceptible Poplar Sections to Marssonina brunnea Infection
journal, March 2018
- Zhang, Yanfeng; Tian, Longyan; Yan, Dong-Hui
- Genes, Vol. 9, Issue 3
Adaptation to the Host Environment by Plant-Pathogenic Fungi
journal, August 2017
- van der Does, H. Charlotte; Rep, Martijn
- Annual Review of Phytopathology, Vol. 55, Issue 1
Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses
journal, April 2008
- Bu, Qingyun; Jiang, Hongling; Li, Chang-Bao
- Cell Research, Vol. 18, Issue 7
Exogenous Controls Increase Negative Call Veracity in Multiplexed, Quantitative PCR Assays for Phakopsora pachyrhizi
journal, March 2011
- Haudenshield, James S.; Hartman, Glen L.
- Plant Disease, Vol. 95, Issue 3
NAC transcription factors in plant immunity
journal, January 2019
- Yuan, Xi; Wang, Hui; Cai, Jiating
- Phytopathology Research, Vol. 1, Issue 1
ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation: ERF105 and cold stress
journal, November 2016
- Bolt, Sylvia; Zuther, Ellen; Zintl, Stefanie
- Plant, Cell & Environment, Vol. 40, Issue 1
NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root Cap
journal, August 2018
- Huysmans, Marlies; Buono, Rafael Andrade; Skorzinski, Noemi
- The Plant Cell, Vol. 30, Issue 9
Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development
journal, December 2000
- Xie, Q.
- Genes & Development, Vol. 14, Issue 23
Cropping System Diversification Reduces Severity and Incidence of Soybean Sudden Death Syndrome Caused by Fusarium virguliforme
journal, September 2018
- Leandro, L. F. S.; Eggenberger, S.; Chen, C.
- Plant Disease, Vol. 102, Issue 9
What lies beneath: belowground defense strategies in plants
journal, February 2015
- De Coninck, Barbara; Timmermans, Pieter; Vos, Christine
- Trends in Plant Science, Vol. 20, Issue 2
A regulon conserved in monocot and dicot plants defines a functional module in antifungal plant immunity
journal, November 2010
- Humphry, M.; Bednarek, P.; Kemmerling, B.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 50
OrthoFinder: phylogenetic orthology inference for comparative genomics
journal, November 2019
- Emms, David M.; Kelly, Steven
- Genome Biology, Vol. 20, Issue 1
Fusarium virguliform e Transcriptional Plasticity Is Revealed by Host Colonization of Maize versus Soybean
journal, December 2019
- Baetsen-Young, Amy; Man Wai, Ching; VanBuren, Robert
- The Plant Cell, Vol. 32, Issue 2
On the move: induced resistance in monocots
journal, October 2012
- Balmer, Dirk; Planchamp, Chantal; Mauch-Mani, Brigitte
- Journal of Experimental Botany, Vol. 64, Issue 5
Root cell death and systemic effects of Piriformospora indica : a study on mutualism
journal, October 2007
- Schäfer, Patrick; Khatabi, Behnam; Kogel, Karl-Heinz
- FEMS Microbiology Letters, Vol. 275, Issue 1
Necrotroph Attacks on Plants: Wanton Destruction or Covert Extortion?
journal, January 2010
- Laluk, Kristin; Mengiste, Tesfaye
- The Arabidopsis Book, Vol. 8
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
journal, May 2017
- Tian, Tian; Liu, Yue; Yan, Hengyu
- Nucleic Acids Research, Vol. 45, Issue W1
Plant Defense Mechanisms Are Activated during Biotrophic and Necrotrophic Development of Colletotricum graminicola in Maize
journal, January 2012
- Vargas, Walter A.; Martín, José M. Sanz; Rech, Gabriel E.
- Plant Physiology, Vol. 158, Issue 3
Transcriptional Regulation of Carbohydrate Metabolism in the Human Pathogen Candida albicans
journal, October 2009
- Askew, Christopher; Sellam, Adnane; Epp, Elias
- PLoS Pathogens, Vol. 5, Issue 10
DGCA: A comprehensive R package for Differential Gene Correlation Analysis
journal, November 2016
- McKenzie, Andrew T.; Katsyv, Igor; Song, Won-Min
- BMC Systems Biology, Vol. 10, Issue 1
Roles of miR319 and TCP Transcription Factors in Leaf Development
journal, August 2017
- Koyama, Tomotsugu; Sato, Fumihiko; Ohme-Takagi, Masaru
- Plant Physiology, Vol. 175, Issue 2
JUNGBRUNNEN1 , a Reactive Oxygen Species–Responsive NAC Transcription Factor, Regulates Longevity in Arabidopsis
journal, February 2012
- Wu, Anhui; Allu, Annapurna Devi; Garapati, Prashanth
- The Plant Cell, Vol. 24, Issue 2
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
journal, August 2012
- O'Connell, Richard J.; Thon, Michael R.; Hacquard, Stéphane
- Nature Genetics, Vol. 44, Issue 9
Integration of root phenes for soil resource acquisition
journal, January 2013
- York, Larry M.; Nord, Eric A.; Lynch, Jonathan P.
- Frontiers in Plant Science, Vol. 4
Improved Diagnoses and Quantification of Fusarium virguliforme , Causal Agent of Soybean Sudden Death Syndrome
journal, March 2015
- Wang, Jie; Jacobs, Janette L.; Byrne, Jan M.
- Phytopathology, Vol. 105, Issue 3
Keeping Control: The Role of Senescence and Development in Plant Pathogenesis and Defense
journal, July 2015
- Häffner, Eva; Konietzki, Sandra; Diederichsen, Elke
- Plants, Vol. 4, Issue 3
mRNA-Seq Analysis of the Pseudoperonospora cubensis Transcriptome During Cucumber (Cucumis sativus L.) Infection
journal, April 2012
- Savory, Elizabeth A.; Adhikari, Bishwo N.; Hamilton, John P.
- PLoS ONE, Vol. 7, Issue 4
HTSeq--a Python framework to work with high-throughput sequencing data
journal, September 2014
- Anders, S.; Pyl, P. T.; Huber, W.
- Bioinformatics, Vol. 31, Issue 2
Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
journal, March 2019
- Banerjee, Samiran; Walder, Florian; Büchi, Lucie
- The ISME Journal, Vol. 13, Issue 7
NAC transcription factor JUNGBRUNNEN1 enhances drought tolerance in tomato
journal, August 2017
- Thirumalaikumar, Venkatesh P.; Devkar, Vikas; Mehterov, Nikolay
- Plant Biotechnology Journal, Vol. 16, Issue 2
Large-Scale Transcriptome Analysis of Cucumber and Botrytis cinerea during Infection
journal, November 2015
- Kong, Weiwen; Chen, Nan; Liu, Tingting
- PLOS ONE, Vol. 10, Issue 11
Symptomatic and Asymptomatic Host Range of Fusarium virguliforme , the Causal Agent of Soybean Sudden Death Syndrome
journal, August 2012
- Kolander, T. M.; Bienapfl, J. C.; Kurle, J. E.
- Plant Disease, Vol. 96, Issue 8
Different Pathogen Defense Strategies in Arabidopsis: More than Pathogen Recognition
journal, December 2018
- Zhang, Wei; Zhao, Feng; Jiang, Lihui
- Cells, Vol. 7, Issue 12
Tipping the Balance: Sclerotinia sclerotiorum Secreted Oxalic Acid Suppresses Host Defenses by Manipulating the Host Redox Environment
journal, June 2011
- Williams, Brett; Kabbage, Mehdi; Kim, Hyo-Jin
- PLoS Pathogens, Vol. 7, Issue 6
Active photosynthetic inhibition mediated by MPK3/MPK6 is critical to effector-triggered immunity
journal, May 2018
- Su, Jianbin; Yang, Liuyi; Zhu, Qiankun
- PLOS Biology, Vol. 16, Issue 5
Soybean Yield Loss Estimates Due to Diseases in the United States and Ontario, Canada, from 2010 to 2014
journal, January 2017
- Allen, Tom W.; Bradley, Carl A.; Sisson, Adam J.
- Plant Health Progress, Vol. 18, Issue 1
The Plant Host Pathogen Interface: Cell Wall and Membrane Dynamics of Pathogen-Induced Responses
journal, May 2007
- Day, B.; Graham, T.
- Annals of the New York Academy of Sciences, Vol. 1113, Issue 1
The Pathogenesis-Related Maize Seed (PRms) Gene Plays a Role in Resistance to Aspergillus flavus Infection and Aflatoxin Contamination
journal, October 2017
- Majumdar, Rajtilak; Rajasekaran, Kanniah; Sickler, Christine
- Frontiers in Plant Science, Vol. 8
WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana
journal, January 2012
- Besseau, Sébastien; Li, Jing; Palva, E. Tapio
- Journal of Experimental Botany, Vol. 63, Issue 7
HISAT: a fast spliced aligner with low memory requirements
journal, March 2015
- Kim, Daehwan; Langmead, Ben; Salzberg, Steven L.
- Nature Methods, Vol. 12, Issue 4
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
journal, December 2014
- Love, Michael I.; Huber, Wolfgang; Anders, Simon
- Genome Biology, Vol. 15, Issue 12
Root anatomical phenes associated with water acquisition from drying soil: targets for crop improvement
journal, April 2014
- Lynch, Jonathan P.; Chimungu, Joseph G.; Brown, Kathleen M.
- Journal of Experimental Botany, Vol. 65, Issue 21