|
Clustal Omega
|
journal
|
December 2014 |
|
Promoter recognition and promoter strength in the Escherichia coli system.
|
journal
|
October 1987 |
|
Analysis of the nucleotide content of Escherichia coli promoter sequences related to the alternative sigma factors
|
journal
|
November 2018 |
|
Role of the Sigma70 Subunit of Escherichia coli RNA Polymerase in Transcription Activation
|
journal
|
January 1994 |
|
Electron Partitioning During Light- and Nutrient-Powered Hydrogen Production by Rhodobacter sphaeroides
|
journal
|
January 2010 |
|
Promoter recognition by Escherichia coli RNA polymerase. Effects of substitutions in the spacer DNA separating the -10 and -35 regions.
|
journal
|
August 1986 |
|
Synthetic biology for microbial production of lipid-based biofuels
|
journal
|
December 2015 |
|
CarD Is an Essential Regulator of rRNA Transcription Required for Mycobacterium tuberculosis Persistence
|
journal
|
July 2009 |
|
Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit
|
journal
|
December 2011 |
|
Recent trends in metabolic engineering of microbial chemical factories
|
journal
|
December 2019 |
|
Sigma70 Promoters in Escherichia coli: Specific Transcription in Dense Regions of Overlapping Promoter-like Signals
|
journal
|
October 2003 |
|
Extra Cytoplasmic Function sigma factors, recent structural insights into promoter recognition and regulation
|
journal
|
February 2015 |
|
Alphaproteobacteria species as a source and target of lateral sequence transfers
|
journal
|
March 2014 |
|
Analysis of mechanisms of activation and repression at bacterial promoters
|
journal
|
January 2009 |
|
Structure of the Bacterial RNA Polymerase Promoter Specificity σ Subunit
|
journal
|
March 2002 |
|
Next Generation Sequencing-Based Parallel Analysis of Melting Kinetics of 4096 Variants of a Bacterial Promoter
|
journal
|
January 2014 |
|
A Group of Sequence-Related Sphingomonad Enzymes Catalyzes Cleavage of β-Aryl Ether Linkages in Lignin β-Guaiacyl and β-Syringyl Ether Dimers
|
journal
|
October 2014 |
|
Factor Stimulating Transcription by RNA Polymerase
|
journal
|
January 1969 |
|
The essential genome of a bacterium
|
journal
|
January 2011 |
|
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
|
journal
|
January 2011 |
|
Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
|
journal
|
November 2009 |
|
The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)
|
journal
|
June 2016 |
|
The regulation of bacterial transcription initiation
|
journal
|
January 2004 |
|
Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus
|
journal
|
April 2004 |
|
Structural basis of ECF-σ-factor-dependent transcription initiation
|
journal
|
February 2019 |
|
Diverse and unified mechanisms of transcription initiation in bacteria
|
journal
|
October 2020 |
|
Caulobacter crescentus CdnL is a non-essential RNA polymerase-binding protein whose depletion impairs normal growth and rRNA transcription
|
journal
|
February 2017 |
|
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
|
journal
|
July 2008 |
|
Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, E
|
journal
|
February 2010 |
|
Structure and function of CarD, an essential mycobacterial transcription factor
|
journal
|
July 2013 |
|
Crystal structure of Aquifex aeolicus σ N bound to promoter DNA and the structure of σ N -holoenzyme
|
journal
|
February 2017 |
|
CarD contributes to diverse gene expression outcomes throughout the genome of Mycobacterium tuberculosis
|
journal
|
June 2019 |
|
A majority of Rhodobacter sphaeroides promoters lack a crucial RNA polymerase recognition feature, enabling coordinated transcription activation
|
journal
|
November 2020 |
|
A cluster of bacterial genes for anaerobic benzene ring biodegradation
|
journal
|
June 1997 |
|
Transcriptional Tradeoff between Metabolic and Stress-response Programs in Pseudomonas putida KT2440 Cells Exposed to Toluene
|
journal
|
February 2006 |
|
Novosphingobium aromaticivorans uses a Nu-class glutathione S -transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin
|
journal
|
February 2018 |
|
A heterodimeric glutathione S -transferase that stereospecifically breaks lignin's β( R )-aryl ether bond reveals the diversity of bacterial β-etherases
|
journal
|
December 2018 |
|
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
|
journal
|
December 2009 |
|
Networks of Gene Sharing among 329 Proteobacterial Genomes Reveal Differences in Lateral Gene Transfer Frequency at Different Phylogenetic Depths
|
journal
|
November 2010 |
|
Delila system tools
|
journal
|
January 1984 |
|
Promoter selectivity of Escherichia coli RNA polymerase: effect of base substitutions in the promoter −35 region on promoter strength
|
journal
|
January 1990 |
|
DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools
|
journal
|
October 2020 |
|
DEG: a database of essential genes
|
journal
|
January 2004 |
|
MEME: discovering and analyzing DNA and protein sequence motifs
|
journal
|
July 2006 |
|
Anatomy of Escherichia coli σ 70 promoters
|
journal
|
December 2006 |
|
Promoter and regulon analysis of nitrogen assimilation factor, σ54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis
|
journal
|
December 2009 |
|
MEME SUITE: tools for motif discovery and searching
|
journal
|
May 2009 |
|
EcoCyc: a comprehensive database of Escherichia coli biology
|
journal
|
November 2010 |
|
CdnL, a member of the large CarD-like family of bacterial proteins, is vital for Myxococcus xanthus and differs functionally from the global transcriptional regulator CarD
|
journal
|
April 2010 |
|
The EMBL-EBI search and sequence analysis tools APIs in 2019
|
journal
|
April 2019 |
|
Database resources of the National Center for Biotechnology Information
|
journal
|
October 2019 |
|
WebLogo: A Sequence Logo Generator
|
journal
|
May 2004 |
|
Mode of antimicrobial action of vanillin against Escherichia coli, Lactobacillus plantarum and Listeria innocua
|
journal
|
July 2004 |
|
Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans
|
journal
|
September 2018 |
|
Redundancy in Aromatic O -Demethylation and Ring-Opening Reactions in Novosphingobium aromaticivorans and Their Impact in the Metabolism of Plant-Derived Phenolics
|
journal
|
March 2021 |
|
Pathways Involved in Reductant Distribution during Photobiological H 2 Production by Rhodobacter sphaeroides
|
journal
|
August 2011 |
|
Activity of Rhodobacter sphaeroides RpoHII, a Second Member of the Heat Shock Sigma Factor Family
|
journal
|
August 2006 |
|
Interaction of CarD with RNA Polymerase Mediates Mycobacterium tuberculosis Viability, Rifampin Resistance, and Pathogenesis
|
journal
|
August 2012 |
|
RpoHII Activates Oxidative-Stress Defense Systems and Is Controlled by RpoE in the Singlet Oxygen-Dependent Response in Rhodobacter sphaeroides
|
journal
|
October 2008 |
|
Transcriptome Dynamics during the Transition from Anaerobic Photosynthesis to Aerobic Respiration in Rhodobacter sphaeroides 2.4.1
|
journal
|
October 2007 |
|
Towards an Informative Mutant Phenotype for Every Bacterial Gene
|
journal
|
August 2014 |
|
Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli
|
journal
|
September 2014 |
|
Transcription of the Rhodobacter sphaeroides cycA P1 Promoter by Alternate RNA Polymerase Holoenzymes
|
journal
|
January 1998 |
|
Metabolic Roles of a Rhodobacter sphaeroides Member of the ς 32 Family
|
journal
|
January 1998 |
|
Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs
|
journal
|
April 2021 |
|
Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria , Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444
|
journal
|
September 2020 |
|
Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants
|
journal
|
September 1989 |
|
Hierarchies of base pair preferences in the P22 ant promoter.
|
journal
|
January 1991 |
|
The sigma 70 family: sequence conservation and evolutionary relationships.
|
journal
|
June 1992 |
|
A consensus promoter sequence for Caulobacter crescentus genes involved in biosynthetic and housekeeping functions.
|
journal
|
January 1995 |
|
Principal sigma subunit of the Caulobacter crescentus RNA polymerase
|
journal
|
December 1995 |
|
Molecular systematic studies of eubacteria, using sigma70-type sigma factors of group 1 and group 2.
|
journal
|
March 1997 |
|
The NtrYX Two-Component System Regulates the Bacterial Cell Envelope
|
journal
|
May 2020 |
|
Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides
|
journal
|
June 2017 |
|
Genome-Scale Transcription-Translation Mapping Reveals Features of Zymomonas mobilis Transcription Units and Promoters
|
journal
|
July 2020 |
|
Activating Transcription in Bacteria
|
journal
|
October 2012 |
|
Twenty-five Years of Delila and Molecular Information Theory
|
journal
|
September 2006 |
|
BLAST+: architecture and applications
|
journal
|
January 2009 |
|
Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution
|
journal
|
January 2013 |
|
Global insights into energetic and metabolic networks in Rhodobacter sphaeroides
|
journal
|
January 2013 |
|
The σ70 family of sigma factors
|
journal
|
January 2003 |
|
Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315
|
journal
|
October 2015 |
|
Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli
|
journal
|
December 2012 |
|
Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses
|
journal
|
September 2012 |
|
The Global Regulatory Architecture of Transcription during the Caulobacter Cell Cycle
|
journal
|
January 2015 |
|
The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter
|
journal
|
January 2020 |
|
The Interrelationship between Promoter Strength, Gene Expression, and Growth Rate
|
journal
|
October 2014 |
|
Transcriptome Landscape of Mycobacterium smegmatis
|
journal
|
December 2017 |
|
Bacterial Sigma Factors and Anti-Sigma Factors: Structure, Function and Distribution
|
journal
|
June 2015 |
|
Bacterial Degradation of Aromatic Compounds
|
journal
|
January 2009 |
|
CarD: A new RNA polymerase modulator in mycobacteria
|
journal
|
January 2011 |
|
CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex
|
journal
|
September 2015 |