Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, Mingxing; Lin, Jishan; Li, Zeyun; Lin, Zhicong; Ma, Yaying; Wang, Yibin; Ming, Ray

doi:10.1371/journal.pone.0227716

Title: Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Journal Article · 15 January 2020 · PLoS ONE

DOI: https://doi.org/10.1371/journal.pone.0227716 · OSTI ID:1802145

Cai, Mingxing ^[1]; Lin, Jishan ^[2]; Li, Zeyun ^[2]; Lin, Zhicong ^[3]; Ma, Yaying ^[2]; Wang, Yibin ^[2];

^[4]

Fujian Agriculture and Forestry Univ., Fuzhou, Fujian (China). Fujian Provincial Key Lab. of Haixia Applied Plant Systems Biology. Center for Genomics and Biotechnology. College of Life Sciences; OSTI
Fujian Agriculture and Forestry Univ., Fuzhou, Fujian (China). Fujian Provincial Key Lab. of Haixia Applied Plant Systems Biology. Center for Genomics and Biotechnology. College of Life Sciences
Fujian Agriculture and Forestry Univ., Fuzhou, Fujian (China). College of Crop Sciences
Fujian Agriculture and Forestry Univ., Fuzhou, Fujian (China). Fujian Provincial Key Lab. of Haixia Applied Plant Systems Biology. Center for Genomics and Biotechnology. College of Life Sciences; Univ. of Illinois at Urbana-Champaign, IL (United States). Dept. of Plant Biology

Dof transcription factors plant-specific and associates with growth and development in plants. We conducted comprehensive and systematic analyses of Dof transcription factors in sugarcane, and identified 29 SsDof transcription factors in sugarcane genome. Those SsDof genes were divided into five groups, with similar gene structures and conserved motifs within the same groups. Segmental duplications are predominant in the evolution of Dof in sugarcane. Cis-element analysis suggested that the functions of SsDofs were involved in growth and development, hormones and abiotic stresses responses in sugarcane. Expression patterns indicated that SsDof7, SsDof23 and SsDof24 had a comparatively high expression in all detected tissues, indicating these genes are crucial in sugarcane growth and development. Moreover, we examined the transcription levels of SsDofs under four plant hormone treatments, SsDof7-3 and SsDof7-4 were down-regulated after ABA treatment, while SsDof7-1 and SsDof7-2 were induced after the same treatment, indicating different alleles may play different roles in response to plant hormones. We also analyzed SsDofs’ expression profiling under four abiotic stresses, SsDof5 and SsDof28 significantly responded to these four stresses, indicating they are associate with abiotic stresses responses. Collectively, our results yielded allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane, and their cis-elements could be crucial for sugarcane improvement.

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Research Organization:: Univ. of Illinois at Urbana-Champaign, IL (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: SC0010686

OSTI ID:: 1802145

Journal Information:: PLoS ONE, Journal Name: PLoS ONE Journal Issue: 1 Vol. 15; ISSN 1932-6203

Publisher:: Public Library of ScienceCopyright Statement

Country of Publication:: United States

Language:: English

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Comprehensive Selection of Reference Genes for Gene Expression Normalization in Sugarcane by Real Time Quantitative RT-PCR Ling, Hui; Wu, Qibin; Guo, Jinlong PLoS ONE, Vol. 9, Issue 5 https://doi.org/10.1371/journal.pone.0097469	journal	May 2014
Expression of DOF genes identifies early stages of vascular development in Arabidopsis leaves Gardiner, Jason; Sherr, Ira; Scarpella, Enrico The International Journal of Developmental Biology, Vol. 54, Issue 8-9 https://doi.org/10.1387/ijdb.093006jg	journal	January 2010
The DNA Binding Site of the Dof Protein NtBBF1 Is Essential for Tissue-Specific and Auxin-Regulated Expression of the rolB Oncogene in Plants Baumann, Kim; Paolis, Angelo De; Costantino, Paolo The Plant Cell, Vol. 11, Issue 3 https://doi.org/10.2307/3870863	journal	March 1999
Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum Zhang, Qing; Hu, Weichang; Zhu, Fan figshare https://doi.org/10.6084/m9.figshare.c.3622889.v1	collection	January 2016
Evolution and expression of the fructokinase gene family in Saccharum Chen, Yihong; Zhang, Qing; Hu, Weichang figshare https://doi.org/10.6084/m9.figshare.c.3699874.v1	collection	January 2017
New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics Hu, Weichang; Hua, Xiuting; Zhang, Qing figshare https://doi.org/10.6084/m9.figshare.c.4294244.v1	collection	January 2018

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