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Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria: Bacterial Microcompartments
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January 2013 |
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Hidden Markov Models in Computational Biology
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February 1994 |
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Beitr�ge zur Cytologie der Blaualgen: II. Mittelung Zentroplasma und granul�re Einschl�sse von Phormidium uncinatum
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January 1956 |
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Clostridium halophilium sp. nov. and C. litorale sp. nov., an obligate halophilic and a marine species degrading betaine in the Stickland reaction
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July 1990 |
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Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life
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March 2018 |
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Engineered bacterial microcompartments: apps for programming metabolism
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October 2020 |
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Bacterial microcompartments moving into a synthetic biological world
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January 2013 |
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The 2.2Å Resolution Structure of RpiB/AlsB from Escherichia coli Illustrates a New Approach to the Ribose-5-phosphate Isomerase Reaction
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October 2003 |
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Identification and Structural Analysis of a Novel Carboxysome Shell Protein with Implications for Metabolite Transport
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September 2009 |
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The Plasticity of Molecular Interactions Governs Bacterial Microcompartment Shell Assembly
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May 2019 |
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Bacterial microcompartments and the modular construction of microbial metabolism
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January 2015 |
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Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering
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June 2017 |
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Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster
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January 2016 |
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Engineering Bacterial Microcompartment Shells: Chimeric Shell Proteins and Chimeric Carboxysome Shells
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July 2014 |
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MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
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October 2017 |
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Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
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January 2016 |
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Embracing the unknown: disentangling the complexities of the soil microbiome
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August 2017 |
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Bacterial microcompartments
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March 2018 |
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Urinary tract infections: epidemiology, mechanisms of infection and treatment options
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April 2015 |
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Encapsulation mechanisms and structural studies of GRM2 bacterial microcompartment particles
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January 2020 |
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Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan
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May 2020 |
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A genomic catalog of Earth’s microbiomes
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November 2020 |
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Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly
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March 2012 |
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The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
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April 2013 |
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Bacterial microcompartment assembly: The key role of encapsulation peptides
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May 2015 |
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Phylogenomic inference of protein molecular function: advances and challenges
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January 2004 |
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Clustal W and Clustal X version 2.0
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September 2007 |
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Jalview Version 2--a multiple sequence alignment editor and analysis workbench
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January 2009 |
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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June 2009 |
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Search and clustering orders of magnitude faster than BLAST
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August 2010 |
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A simple method to control over-alignment in the MAFFT multiple sequence alignment program
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February 2016 |
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Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees
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July 2016 |
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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May 2019 |
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Crystal structures of β-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore
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March 2017 |
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β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints
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April 2017 |
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ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
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February 2016 |
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ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
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August 2019 |
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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October 2020 |
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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March 2004 |
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SWISS-MODEL: homology modelling of protein structures and complexes
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May 2018 |
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Thermoanaerobaculum aquaticum gen. nov., sp. nov., the first cultivated member of Acidobacteria subdivision 23, isolated from a hot spring
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June 2013 |
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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November 2003 |
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Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells
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November 2018 |
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Structure of a Synthetic β -Carboxysome Shell
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September 2019 |
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Characterization of sponge‐associated Verrucomicrobia : microcompartment‐based sugar utilization and enhanced toxin–antitoxin modules as features of host‐associated Opitutales
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September 2020 |
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Protein Structures Forming the Shell of Primitive Bacterial Organelles
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August 2005 |
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Atomic-Level Models of the Bacterial Carboxysome Shell
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February 2008 |
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Functional Organelles in Prokaryotes: Polyhedral Inclusions (Carboxysomes) of Thiobacillus neapolitanus
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November 1973 |
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Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell
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June 2017 |
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Bioinformatic Characterization of Glycyl Radical Enzyme-Associated Bacterial Microcompartments
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September 2015 |
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Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides
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January 2014 |
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In Salmonella enterica, Ethanolamine Utilization Is Repressed by 1,2-Propanediol To Prevent Detrimental Mixing of Components of Two Different Bacterial Microcompartments
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May 2015 |
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Minimal Functions and Physiological Conditions Required for Growth of Salmonella enterica on Ethanolamine in the Absence of the Metabolosome
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November 2005 |
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Glycyl Radical Enzyme-Associated Microcompartments: Redox-Replete Bacterial Organelles
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January 2019 |
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BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
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January 2010 |
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Bacterial microcompartments: catalysis-enhancing metabolic modules for next generation metabolic and biomedical engineering
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October 2019 |
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Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation
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May 2016 |
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The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle
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March 2016 |
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Accelerated Profile HMM Searches
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October 2011 |
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A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
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October 2014 |
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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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March 2010 |
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A Survey of Bacterial Microcompartment Distribution in the Human Microbiome
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May 2021 |
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Diversity of Myxobacteria—We Only See the Tip of the Iceberg
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August 2018 |
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Microbial degradation of complex carbohydrates in the gut
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July 2012 |
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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July 2017 |