GTC: A web server for integrating systems biology data with web tools and desktop applications

Tenenbaum, Dan; Bare, J. Christopher; Baliga, Nitin S.

doi:10.1186/1751-0473-5-7

Title: GTC: A web server for integrating systems biology data with web tools and desktop applications

Journal Article · 12 July 2010 · Source Code for Biology and Medicine

DOI: https://doi.org/10.1186/1751-0473-5-7 · OSTI ID:1797432

Tenenbaum, Dan ^[1]; Bare, J. Christopher ^[1]; Baliga, Nitin S. ^[2]

Inst. for Systems Biology, Seattle, WA (United States)
Inst. for Systems Biology, Seattle, WA (United States); Univ. of Washington, Seattle, WA (United States)

Gaggle Tool Creator (GTC) is a web application which provides access to public annotation, interaction, orthology, and genomic data for hundreds of organisms, and enables instant analysis of the data using many popular web-based and desktop applications.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: NIH; NSF; USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; FG02-07ER64327

OSTI ID:: 1797432

Journal Information:: Source Code for Biology and Medicine, Journal Name: Source Code for Biology and Medicine Journal Issue: 1 Vol. 5; ISSN 1751-0473

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

References (16)

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A hemimetabolous wing development suggests the wing origin from lateral tergum of a wingless ancestor Ohde, Takahiro; Mito, Taro; Niimi, Teruyuki Nature Communications, Vol. 13, Issue 1 https://doi.org/10.1038/s41467-022-28624-x	journal	February 2022
Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants Julca, Irene; Ferrari, Camilla; Flores-Tornero, María Nature Plants, Vol. 7, Issue 8 https://doi.org/10.1038/s41477-021-00958-2	journal	July 2021
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Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea Baliga, Nitin S.; Bonneau, Richard; Facciotti, Marc T. Genome Research, Vol. 14, Issue 11 https://doi.org/10.1101/gr.2700304	journal	November 2004
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications Bare, J. Christopher; Shannon, Paul T.; Schmid, Amy K. BMC Bioinformatics, Vol. 8, Issue 1 https://doi.org/10.1186/1471-2105-8-456	journal	January 2007
Self-assembly of embryonic and two extra-embryonic stem cell types into gastrulating embryo-like structures. Sozen, Berna; Amadei, Gianluca; Cox, Andy Springer Science and Business Media LLC https://doi.org/10.17863/cam.41771	journalarticle	January 2018
The UCSC Genome Browser Karolchik, Donna; Hinrichs, Angie S.; Kent, W. James Current Protocols in Bioinformatics, Vol. 17, Issue 1 https://doi.org/10.1002/0471250953.bi0104s17	journal	March 2007
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Huang, Da Wei; Sherman, Brad T.; Lempicki, Richard A. Nature Protocols, Vol. 4, Issue 1 https://doi.org/10.1038/nprot.2008.211	journal	December 2008
KEGG for linking genomes to life and the environment Kanehisa, M.; Araki, M.; Goto, S. Nucleic Acids Research, Vol. 36, Issue Database https://doi.org/10.1093/nar/gkm882	journal	December 2007
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks Shannon, P. Genome Research, Vol. 13, Issue 11 https://doi.org/10.1101/gr.1239303	journal	November 2003
Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea Baliga, Nitin S.; Bonneau, Richard; Facciotti, Marc T. Genome Research, Vol. 14, Issue 11 https://doi.org/10.1101/gr.2700304	journal	November 2004
The Gaggle: An open-source software system for integrating bioinformatics software and data sources Shannon, Paul T.; Reiss, David J.; Bonneau, Richard BMC Bioinformatics, Vol. 7, Issue 1 https://doi.org/10.1186/1471-2105-7-176	journal	March 2006
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications Bare, J. Christopher; Shannon, Paul T.; Schmid, Amy K. BMC Bioinformatics, Vol. 8, Issue 1 https://doi.org/10.1186/1471-2105-8-456	journal	January 2007

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
97 MATHEMATICS AND COMPUTING
Desktop application
Genome browser
Integrate system biology
Special script
UCSC genome browser

Title: GTC: A web server for integrating systems biology data with web tools and desktop applications

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References (16)

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