DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Global biogeography of fungal and bacterial biomass carbon in topsoil

Abstract

Bacteria and fungi, representing two major soil microorganism groups, play an important role in global nutrient biogeochemistry. Biogeographic patterns of bacterial and fungal biomass are of fundamental importance for mechanistically understanding nutrient cycling. We synthesized 1323 data points of phospholipid fatty acid-derived fungal biomass C (FBC), bacterial biomass C (BBC), and fungi:bacteria (F:B) ratio in topsoil, spanning 11 major biomes. The FBC, BBC, and F:B ratio display clear biogeographic patterns along latitude and environmental gradients including mean annual temperature, mean annual precipitation, net primary productivity, root C density, soil temperature, soil moisture, and edaphic factors. At the biome level, tundra has the highest FBC and BBC densities at 3684 (95% confidence interval: 1678–8084) mg kg-1 and 428 (237–774) mg kg-1, respectively; desert has the lowest FBC and BBC densities at 16.92 (14.4–19.89) mg kg-1 and 6.83 (6.1–7.65) mg kg-1, respectively. The F:B ratio varies dramatically, ranging from 1.8 (1.6–2.1) in savanna to 8.6 (6.7–11.0) in tundra. An empirical model was developed for the F:B ratio and it is combined with a global dataset of soil microbial biomass C to produce global maps for FBC and BBC in 0–30 cm topsoil. Across the globe, the highest FBC is found in borealmore » forest and tundra while the highest BBC is in boreal forest and tropical/subtropical forest, the lowest FBC and BBC are in shrub and desert. Global stocks of living microbial biomass C were estimated to be 12.6 (6.6–16.4) Pg C for FBC and 4.3 (0.5–10.3) Pg C for BBC in topsoil. These findings advance our understanding of the global distribution of fungal and bacterial biomass, which facilitates the incorporation of fungi and bacteria into Earth system models. The global maps of bacterial and fungal biomass serve as a benchmark for validating microbial models in simulating the global C cycle under a changing climate.« less

Authors:
 [1];  [2];  [3];  [3];  [4];  [5];  [6]; ORCiD logo [7];  [8];  [1];  [1]
  1. San Diego State Univ., CA (United States)
  2. Univ. of California, Davis, CA (United States)
  3. Leiden Univ. (Netherlands). Inst. of Environmental Sciences, CML
  4. Lund Univ. (Sweden)
  5. Chinese Academy of Sciences (CAS), Changchun (China). Northeast Institute of Geography and Agroecology
  6. Univ. of Tartu, Tartu (Estonia). Institute of Ecology and Earth Sciences
  7. San Diego State Univ., CA (United States); Chinese Academy of Sciences (CAS), Shenyang (China). Shenyang Institute of Applied Ecology
  8. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); Chinese Academy of Sciences; National Natural Science Foundation of China (NSFC)
OSTI Identifier:
1786284
Grant/Contract Number:  
AC05-00OR22725
Resource Type:
Accepted Manuscript
Journal Name:
Soil Biology and Biochemistry
Additional Journal Information:
Journal Volume: 151; Journal ID: ISSN 0038-0717
Publisher:
Elsevier
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Fungi; Bacteria; F:B ratio; Biogeography; Pattern

Citation Formats

He, Liyuan, Mazza Rodrigues, Jorge L., Soudzilovskaia, Nadejda A., Barceló, Milagros, Olsson, Pål Axel, Song, Changchun, Tedersoo, Leho, Yuan, Fenghui, Yuan, Fengming, Lipson, David A., and Xu, Xiaofeng. Global biogeography of fungal and bacterial biomass carbon in topsoil. United States: N. p., 2020. Web. doi:10.1016/j.soilbio.2020.108024.
He, Liyuan, Mazza Rodrigues, Jorge L., Soudzilovskaia, Nadejda A., Barceló, Milagros, Olsson, Pål Axel, Song, Changchun, Tedersoo, Leho, Yuan, Fenghui, Yuan, Fengming, Lipson, David A., & Xu, Xiaofeng. Global biogeography of fungal and bacterial biomass carbon in topsoil. United States. https://doi.org/10.1016/j.soilbio.2020.108024
He, Liyuan, Mazza Rodrigues, Jorge L., Soudzilovskaia, Nadejda A., Barceló, Milagros, Olsson, Pål Axel, Song, Changchun, Tedersoo, Leho, Yuan, Fenghui, Yuan, Fengming, Lipson, David A., and Xu, Xiaofeng. Tue . "Global biogeography of fungal and bacterial biomass carbon in topsoil". United States. https://doi.org/10.1016/j.soilbio.2020.108024. https://www.osti.gov/servlets/purl/1786284.
@article{osti_1786284,
title = {Global biogeography of fungal and bacterial biomass carbon in topsoil},
author = {He, Liyuan and Mazza Rodrigues, Jorge L. and Soudzilovskaia, Nadejda A. and Barceló, Milagros and Olsson, Pål Axel and Song, Changchun and Tedersoo, Leho and Yuan, Fenghui and Yuan, Fengming and Lipson, David A. and Xu, Xiaofeng},
abstractNote = {Bacteria and fungi, representing two major soil microorganism groups, play an important role in global nutrient biogeochemistry. Biogeographic patterns of bacterial and fungal biomass are of fundamental importance for mechanistically understanding nutrient cycling. We synthesized 1323 data points of phospholipid fatty acid-derived fungal biomass C (FBC), bacterial biomass C (BBC), and fungi:bacteria (F:B) ratio in topsoil, spanning 11 major biomes. The FBC, BBC, and F:B ratio display clear biogeographic patterns along latitude and environmental gradients including mean annual temperature, mean annual precipitation, net primary productivity, root C density, soil temperature, soil moisture, and edaphic factors. At the biome level, tundra has the highest FBC and BBC densities at 3684 (95% confidence interval: 1678–8084) mg kg-1 and 428 (237–774) mg kg-1, respectively; desert has the lowest FBC and BBC densities at 16.92 (14.4–19.89) mg kg-1 and 6.83 (6.1–7.65) mg kg-1, respectively. The F:B ratio varies dramatically, ranging from 1.8 (1.6–2.1) in savanna to 8.6 (6.7–11.0) in tundra. An empirical model was developed for the F:B ratio and it is combined with a global dataset of soil microbial biomass C to produce global maps for FBC and BBC in 0–30 cm topsoil. Across the globe, the highest FBC is found in boreal forest and tundra while the highest BBC is in boreal forest and tropical/subtropical forest, the lowest FBC and BBC are in shrub and desert. Global stocks of living microbial biomass C were estimated to be 12.6 (6.6–16.4) Pg C for FBC and 4.3 (0.5–10.3) Pg C for BBC in topsoil. These findings advance our understanding of the global distribution of fungal and bacterial biomass, which facilitates the incorporation of fungi and bacteria into Earth system models. The global maps of bacterial and fungal biomass serve as a benchmark for validating microbial models in simulating the global C cycle under a changing climate.},
doi = {10.1016/j.soilbio.2020.108024},
journal = {Soil Biology and Biochemistry},
number = ,
volume = 151,
place = {United States},
year = {Tue Dec 01 00:00:00 EST 2020},
month = {Tue Dec 01 00:00:00 EST 2020}
}

Works referenced in this record:

Quantitative assessment of microbial necromass contribution to soil organic matter
journal, August 2019

  • Liang, Chao; Amelung, Wulf; Lehmann, Johannes
  • Global Change Biology, Vol. 25, Issue 11
  • DOI: 10.1111/gcb.14781

Beyond biogeographic patterns: processes shaping the microbial landscape
journal, May 2012

  • Hanson, China A.; Fuhrman, Jed A.; Horner-Devine, M. Claire
  • Nature Reviews Microbiology, Vol. 10, Issue 7
  • DOI: 10.1038/nrmicro2795

Global mycorrhizal plant distribution linked to terrestrial carbon stocks
journal, November 2019

  • Soudzilovskaia, Nadejda A.; van Bodegom, Peter M.; Terrer, César
  • Nature Communications, Vol. 10, Issue 1
  • DOI: 10.1038/s41467-019-13019-2

Microbial biogeography: putting microorganisms on the map
journal, February 2006

  • Martiny, Jennifer B. Hughes; Bohannan, Brendan J. M.; Brown, James H.
  • Nature Reviews Microbiology, Vol. 4, Issue 2
  • DOI: 10.1038/nrmicro1341

Elemental stoichiometry of Fungi and Bacteria strains from grassland leaf litter
journal, September 2014


Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems
journal, January 2006

  • Six, J.; Frey, S. D.; Thiet, R. K.
  • Soil Science Society of America Journal, Vol. 70, Issue 2
  • DOI: 10.2136/sssaj2004.0347

Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities
journal, August 2012


Microbial Behavior in a Heterogeneous World
journal, May 2002


Soil nematode abundance and functional group composition at a global scale
journal, July 2019


I. Spatio-temporal patterns of soil microbial and enzymatic activities in an agricultural soil
journal, November 2001


Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models
journal, May 2013

  • Waring, Bonnie G.; Averill, Colin; Hawkes, Christine V.
  • Ecology Letters, Vol. 16, Issue 7
  • DOI: 10.1111/ele.12125

A substrate-induced respiration (SIR) method for measurement of fungal and bacterial biomass on plant residues
journal, January 1990

  • Beare, Michael H.; Neely, Constance L.; Coleman, David C.
  • Soil Biology and Biochemistry, Vol. 22, Issue 5
  • DOI: 10.1016/0038-0717(90)90002-H

Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests
journal, October 2015

  • Ding, Junjun; Zhang, Yuguang; Wang, Mengmeng
  • Molecular Ecology, Vol. 24, Issue 20
  • DOI: 10.1111/mec.13384

Comparison of temperature effects on soil respiration and bacterial and fungal growth rates
journal, March 2005

  • PietikÃ¥inen, Janna; Pettersson, Marie; Bååth, Erland
  • FEMS Microbiology Ecology, Vol. 52, Issue 1
  • DOI: 10.1016/j.femsec.2004.10.002

Long-term organic farming fosters below and aboveground biota: Implications for soil quality, biological control and productivity
journal, September 2008


Microbial macroecology: In search of mechanisms governing microbial biogeographic patterns
journal, August 2020

  • Xu, Xiaofeng; Wang, Nannan; Lipson, David
  • Global Ecology and Biogeography, Vol. 29, Issue 11
  • DOI: 10.1111/geb.13162

Global covariation of carbon turnover times with climate in terrestrial ecosystems
journal, September 2014

  • Carvalhais, Nuno; Forkel, Matthias; Khomik, Myroslava
  • Nature, Vol. 514, Issue 7521
  • DOI: 10.1038/nature13731

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
journal, January 2011


Mycorrhizas and soil structure
journal, July 2006


The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil
journal, April 1996

  • Frosteg�rd, A.; B��th, E.
  • Biology and Fertility of Soils, Vol. 22, Issue 1-2
  • DOI: 10.1007/BF00384433

Investigating the mechanisms for the opposing pH relationships of fungal and bacterial growth in soil
journal, June 2010


Enzyme activities as a component of soil biodiversity: A review
journal, November 2005


Living in a fungal world: impact of fungi on soil bacterial niche development
journal, September 2005


Substrate and environmental controls on microbial assimilation of soil organic carbon: a framework for Earth system models
journal, February 2014

  • Xu, Xiaofeng; Schimel, Joshua P.; Thornton, Peter E.
  • Ecology Letters, Vol. 17, Issue 5
  • DOI: 10.1111/ele.12254

Patterns and drivers of soil microbial communities along a precipitation gradient on the Mongolian Plateau
journal, February 2014


Patterns and drivers of soil microbial communities in Tibetan alpine and global terrestrial ecosystems
journal, June 2016

  • Chen, Yong-Liang; Ding, Jin-Zhi; Peng, Yun-Feng
  • Journal of Biogeography, Vol. 43, Issue 10
  • DOI: 10.1111/jbi.12806

A global analysis of soil microbial biomass carbon, nitrogen and phosphorus in terrestrial ecosystems: Global soil microbial biomass C, N and P
journal, December 2012

  • Xu, Xiaofeng; Thornton, Peter E.; Post, Wilfred M.
  • Global Ecology and Biogeography, Vol. 22, Issue 6
  • DOI: 10.1111/geb.12029

Are the soil microbial biomass and basal respiration governed by the climatic regime?
journal, January 1990


The biomass distribution on Earth
journal, May 2018

  • Bar-On, Yinon M.; Phillips, Rob; Milo, Ron
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 25
  • DOI: 10.1073/pnas.1711842115

Global soil carbon projections are improved by modelling microbial processes
journal, July 2013

  • Wieder, William R.; Bonan, Gordon B.; Allison, Steven D.
  • Nature Climate Change, Vol. 3, Issue 10
  • DOI: 10.1038/nclimate1951

Evidence that plant diversity and site productivity confer stability to forest floor microbial biomass
journal, May 2010


Global pattern and controls of soil microbial metabolic quotient
journal, May 2017

  • Xu, Xiaofeng; Schimel, Joshua P.; Janssens, Ivan A.
  • Ecological Monographs, Vol. 87, Issue 3
  • DOI: 10.1002/ecm.1258

Links between plant community composition, soil organic matter quality and microbial communities in contrasting tundra habitats
journal, May 2009


Global diversity and geography of soil fungi
journal, November 2014


Long-term effects of mineral fertilizers on soil microorganisms – A review
journal, August 2014


Fungi-to-bacteria ratio in soils of European Russia
journal, August 2014

  • Ananyeva, Nadezhda D.; Castaldi, Simona; Stolnikova, Ekaterina V.
  • Archives of Agronomy and Soil Science, Vol. 61, Issue 4
  • DOI: 10.1080/03650340.2014.940916

Determination of microbial biomass and fungal and bacterial distribution in cattle faeces
journal, June 2011

  • Jost, Daphne Isabel; Indorf, Caroline; Joergensen, Rainer Georg
  • Soil Biology and Biochemistry, Vol. 43, Issue 6
  • DOI: 10.1016/j.soilbio.2011.02.013

Structure and function of the global topsoil microbiome
journal, August 2018


Soil microbial and nutrient responses to 7 years of seasonally altered precipitation in a Chihuahuan Desert grassland
journal, April 2014

  • Bell, Colin W.; Tissue, David T.; Loik, Michael E.
  • Global Change Biology, Vol. 20, Issue 5
  • DOI: 10.1111/gcb.12418

Growth of saprotrophic fungi and bacteria in soil: Growth of saprotrophic fungi and bacteria in soil
journal, April 2011


Microbial control over carbon cycling in soil
journal, January 2012


Amino sugars and muramic acid—biomarkers for soil microbial community structure analysis
journal, March 2004


Soil microbial biomass and the fate of phosphorus during long-term ecosystem development
journal, November 2012


Revisiting the ‘Gadgil effect’: do interguild fungal interactions control carbon cycling in forest soils?
journal, September 2015

  • Fernandez, Christopher W.; Kennedy, Peter G.
  • New Phytologist, Vol. 209, Issue 4
  • DOI: 10.1111/nph.13648

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada
journal, January 2012


Large-scale forest girdling shows that current photosynthesis drives soil respiration
journal, June 2001

  • Högberg, Peter; Nordgren, Anders; Buchmann, Nina
  • Nature, Vol. 411, Issue 6839
  • DOI: 10.1038/35081058

The diversity and biogeography of soil bacterial communities
journal, January 2006

  • Fierer, N.; Jackson, R. B.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 3
  • DOI: 10.1073/pnas.0507535103

Changes in Soil Microbial Community Structure and Function in an Alpine Dry Meadow Following Spring Snow Melt
journal, May 2002


Effects of soil texture and structure on carbon and nitrogen mineralization in grassland soils
journal, October 1992


Changes in microbial community structure and function following Sphagnum peatland restoration
journal, February 2010


The Microbial Engines That Drive Earth's Biogeochemical Cycles
journal, May 2008


The global soil community and its influence on biogeochemistry
journal, August 2019


The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
journal, March 2008


Global patterns in belowground communities
journal, November 2009


Significant inconsistency of vegetation carbon density in CMIP5 Earth system models against observational data
journal, September 2017

  • Song, Xia; Hoffman, Forrest M.; Iversen, Colleen M.
  • Journal of Geophysical Research: Biogeosciences, Vol. 122, Issue 9
  • DOI: 10.1002/2017JG003914

Global biogeography of fungal and bacterial biomass carbon in topsoil
dataset, January 2020


Global biogeography of fungal and bacterial biomass carbon in topsoil
dataset, January 2020


Works referencing / citing this record:

Global biogeography of fungal and bacterial biomass carbon in topsoil
dataset, January 2020


Global biogeography of fungal and bacterial biomass carbon in topsoil
dataset, January 2020