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Title: Reproducibility and Transparency by Design

Journal Article · · Molecular and Cellular Proteomics
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Not Available

Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI ID:
1766607
Journal Information:
Molecular and Cellular Proteomics, Journal Name: Molecular and Cellular Proteomics Journal Issue: 8 S1 Vol. 18; ISSN 1535-9476
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English

References (22)

Use of proteomic patterns in serum to identify ovarian cancer journal February 2002
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking journal August 2016
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages journal December 2013
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping journal April 2013
Orchestrating high-throughput genomic analysis with Bioconductor journal January 2015
Toward a Shared Vision for Cancer Genomic Data journal September 2016
New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins journal February 2017
Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis journal January 2019
Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles) journal December 2011
BioContainers: an open-source and community-driven framework for software standardization journal March 2017
Cancer Biomarkers: Can We Turn Recent Failures into Success? journal August 2010
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition journal October 2016
Protein Sequences from Mastodon and Tyrannosaurus Rex Revealed by Mass Spectrometry journal April 2007
Widespread RNA and DNA Sequence Differences in the Human Transcriptome journal May 2011
Absence of Detectable Arsenate in DNA from Arsenate-Grown GFAJ-1 Cells journal July 2012
Why Your New Cancer Biomarker May Never Work: Recurrent Patterns and Remarkable Diversity in Biomarker Failures journal November 2012
A data repository and analysis framework for spontaneous neural activity recordings in developing retina journal March 2014
Blazing Signature Filter: a library for fast pairwise similarity comparisons journal June 2018
Five selfish reasons to work reproducibly journal December 2015
Ten Simple Rules for Taking Advantage of Git and GitHub journal July 2016
R Markdown: Integrating A Reproducible Analysis Tool into Introductory Statistics journal January 2014
How open science helps researchers succeed journal July 2016

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