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Title: CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa

Abstract

Abstract Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a repository for all the gene expression and regulatory information that is being rapidly generated by the community. Here, we provide CamRegBase (https://camregbase.org/) as a one-stop resource to access Camelina information on gene expression and co-expression, transcription factors, lipid associated genes and genome-wide orthologs in the close-relative reference plant Arabidopsis. We envision this as a resource of curated information for users, as well as a repository of new gene regulation information.

Authors:
ORCiD logo [1];  [2];  [1];  [1];  [1];  [1]; ORCiD logo [2];  [1]
  1. Department of Biochemistry and Molecular Biology, 603 Wilson Road, Room 212, Biochemistry Building, East Lansing, MI 48824-6473, USA
  2. Department of Plant Biology, Michigan State University, 612 Wilson Road, Room 166, East Lansing, MI 48824-1312, USA
Publication Date:
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1735659
Grant/Contract Number:  
SC0018269
Resource Type:
Published Article
Journal Name:
Database
Additional Journal Information:
Journal Name: Database Journal Volume: 2020; Journal ID: ISSN 1758-0463
Publisher:
Oxford University Press
Country of Publication:
United Kingdom
Language:
English

Citation Formats

Gomez-Cano, Fabio, Carey, Lisa, Lucas, Kevin, García Navarrete, Tatiana, Mukundi, Eric, Lundback, Steve, Schnell, Danny, and Grotewold, Erich. CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa. United Kingdom: N. p., 2020. Web. https://doi.org/10.1093/database/baaa075.
Gomez-Cano, Fabio, Carey, Lisa, Lucas, Kevin, García Navarrete, Tatiana, Mukundi, Eric, Lundback, Steve, Schnell, Danny, & Grotewold, Erich. CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa. United Kingdom. https://doi.org/10.1093/database/baaa075
Gomez-Cano, Fabio, Carey, Lisa, Lucas, Kevin, García Navarrete, Tatiana, Mukundi, Eric, Lundback, Steve, Schnell, Danny, and Grotewold, Erich. Fri . "CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa". United Kingdom. https://doi.org/10.1093/database/baaa075.
@article{osti_1735659,
title = {CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa},
author = {Gomez-Cano, Fabio and Carey, Lisa and Lucas, Kevin and García Navarrete, Tatiana and Mukundi, Eric and Lundback, Steve and Schnell, Danny and Grotewold, Erich},
abstractNote = {Abstract Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a repository for all the gene expression and regulatory information that is being rapidly generated by the community. Here, we provide CamRegBase (https://camregbase.org/) as a one-stop resource to access Camelina information on gene expression and co-expression, transcription factors, lipid associated genes and genome-wide orthologs in the close-relative reference plant Arabidopsis. We envision this as a resource of curated information for users, as well as a repository of new gene regulation information.},
doi = {10.1093/database/baaa075},
journal = {Database},
number = ,
volume = 2020,
place = {United Kingdom},
year = {2020},
month = {12}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1093/database/baaa075

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