Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography
Abstract
Characterizing relationships between cell structures and functions requires mesoscale mapping of intact cells showing subcellular rearrangements following stimulation; however, current approaches are limited in this regard. Here, we report a unique application of soft x-ray tomography to generate three-dimensional reconstructions of whole pancreatic β cells at different time points following glucose-stimulated insulin secretion. Reconstructions following stimulation showed distinct insulin vesicle distribution patterns reflective of altered vesicle pool sizes as they travel through the secretory pathway. Our results show that glucose stimulation caused rapid changes in biochemical composition and/or density of insulin packing, increased mitochondrial volume, and closer proximity of insulin vesicles to mitochondria. Costimulation with exendin-4 (a glucagon-like peptide-1 receptor agonist) prolonged these effects and increased insulin packaging efficiency and vesicle maturation. This study provides unique perspectives on the coordinated structural reorganization and interactions of organelles that dictate cell responses.
- Authors:
-
- Department of Biological Sciences, Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA 90089, USA., Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
- Department of Biological Sciences, Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA 90089, USA., Institute for Quantitative and Computational Biosciences, Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA 90095, USA.
- iHuman Institute, School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
- Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Department of Anatomy, University of California, San Francisco, San Francisco, CA 94143, USA.
- Department of Anatomy, University of California, San Francisco, San Francisco, CA 94143, USA.
- Department of Biological Sciences, Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA 90089, USA.
- Department of Computer Science, Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA 90089, USA.
- Department of Chemistry, Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA 90089, USA.
- California Institute for Quantitative Biosciences, Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA 94158, USA.
- Department of Biological Sciences, Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA 90089, USA., iHuman Institute, School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China., Department of Chemistry, Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA 90089, USA.
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Institutes of Health (NIH); National Natural Science Foundation of China (NSFC)
- OSTI Identifier:
- 1734835
- Alternate Identifier(s):
- OSTI ID: 1763702
- Grant/Contract Number:
- AC02-05CH11231; P41GM103445; R01GM083960; P41GM109824; 31950410543
- Resource Type:
- Published Article
- Journal Name:
- Science Advances
- Additional Journal Information:
- Journal Name: Science Advances Journal Volume: 6 Journal Issue: 50; Journal ID: ISSN 2375-2548
- Publisher:
- AAAS
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
White, Kate L., Singla, Jitin, Loconte, Valentina, Chen, Jian-Hua, Ekman, Axel, Sun, Liping, Zhang, Xianjun, Francis, John Paul, Li, Angdi, Lin, Wen, Tseng, Kaylee, McDermott, Gerry, Alber, Frank, Sali, Andrej, Larabell, Carolyn, and Stevens, Raymond C. Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography. United States: N. p., 2020.
Web. doi:10.1126/sciadv.abc8262.
White, Kate L., Singla, Jitin, Loconte, Valentina, Chen, Jian-Hua, Ekman, Axel, Sun, Liping, Zhang, Xianjun, Francis, John Paul, Li, Angdi, Lin, Wen, Tseng, Kaylee, McDermott, Gerry, Alber, Frank, Sali, Andrej, Larabell, Carolyn, & Stevens, Raymond C. Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography. United States. https://doi.org/10.1126/sciadv.abc8262
White, Kate L., Singla, Jitin, Loconte, Valentina, Chen, Jian-Hua, Ekman, Axel, Sun, Liping, Zhang, Xianjun, Francis, John Paul, Li, Angdi, Lin, Wen, Tseng, Kaylee, McDermott, Gerry, Alber, Frank, Sali, Andrej, Larabell, Carolyn, and Stevens, Raymond C. Wed .
"Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography". United States. https://doi.org/10.1126/sciadv.abc8262.
@article{osti_1734835,
title = {Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography},
author = {White, Kate L. and Singla, Jitin and Loconte, Valentina and Chen, Jian-Hua and Ekman, Axel and Sun, Liping and Zhang, Xianjun and Francis, John Paul and Li, Angdi and Lin, Wen and Tseng, Kaylee and McDermott, Gerry and Alber, Frank and Sali, Andrej and Larabell, Carolyn and Stevens, Raymond C.},
abstractNote = {Characterizing relationships between cell structures and functions requires mesoscale mapping of intact cells showing subcellular rearrangements following stimulation; however, current approaches are limited in this regard. Here, we report a unique application of soft x-ray tomography to generate three-dimensional reconstructions of whole pancreatic β cells at different time points following glucose-stimulated insulin secretion. Reconstructions following stimulation showed distinct insulin vesicle distribution patterns reflective of altered vesicle pool sizes as they travel through the secretory pathway. Our results show that glucose stimulation caused rapid changes in biochemical composition and/or density of insulin packing, increased mitochondrial volume, and closer proximity of insulin vesicles to mitochondria. Costimulation with exendin-4 (a glucagon-like peptide-1 receptor agonist) prolonged these effects and increased insulin packaging efficiency and vesicle maturation. This study provides unique perspectives on the coordinated structural reorganization and interactions of organelles that dictate cell responses.},
doi = {10.1126/sciadv.abc8262},
journal = {Science Advances},
number = 50,
volume = 6,
place = {United States},
year = {Wed Dec 09 00:00:00 EST 2020},
month = {Wed Dec 09 00:00:00 EST 2020}
}
https://doi.org/10.1126/sciadv.abc8262
Works referenced in this record:
Activins A and B Regulate Fate-Determining Gene Expression in Islet Cell Lines and Islet Cells From Male Mice
journal, May 2015
- Andrzejewski, Danielle; Brown, Melissa L.; Ungerleider, Nathan
- Endocrinology, Vol. 156, Issue 7
Identification of the docked granule pool responsible for the first phase of glucose-stimulated insulin secretion
journal, September 1999
- Daniel, S.; Noda, M.; Straub, S. G.
- Diabetes, Vol. 48, Issue 9
Glucose Acutely Decreases pH of Secretory Granules in Mouse Pancreatic Islets: MECHANISMS AND INFLUENCE ON INSULIN SECRETION
journal, June 2006
- Stiernet, Patrick; Guiot, Yves; Gilon, Patrick
- Journal of Biological Chemistry, Vol. 281, Issue 31
Isolation and Properties of Secretory Granules from rat Islets of Langerhans
journal, April 1969
- Greider, Marie H.; Howell, S. L.; Lacy, P. E.
- Journal of Cell Biology, Vol. 41, Issue 1
Bestimmung der Absorption des rothen Lichts in farbigen Flüssigkeiten
journal, January 1852
- Beer,
- Annalen der Physik und Chemie, Vol. 162, Issue 5
EIPR1 controls dense-core vesicle cargo retention and EARP complex localization in insulin-secreting cells
journal, January 2020
- Topalidou, Irini; Cattin-Ortolá, Jérôme; Hummer, Blake
- Molecular Biology of the Cell, Vol. 31, Issue 1
Tomographic imaging of biological specimens with the cryo transmission X-ray microscope
journal, July 2001
- Weiß, D.; Schneider, G.; Vogt, S.
- Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 467-468
Glucose but not KCl diminishes submembrane granule turnover in mouse beta-cells
journal, October 2017
- Brüning, Dennis; Reckers, Kirstin; Drain, Peter
- Journal of Molecular Endocrinology, Vol. 59, Issue 3
Determination of secretory granule maturation times in pancreatic islet β-cells by serial block-face electron microscopy
journal, October 2020
- Rao, A.; McBride, E. L.; Zhang, G.
- Journal of Structural Biology, Vol. 212, Issue 1
cellPACK: a virtual mesoscope to model and visualize structural systems biology
journal, December 2014
- Johnson, Graham T.; Autin, Ludovic; Al-Alusi, Mostafa
- Nature Methods, Vol. 12, Issue 1
Coupling of Insulin Secretion and Display of a Granule-resident Zinc Transporter ZnT8 on the Surface of Pancreatic Beta Cells
journal, January 2017
- Huang, Qiong; Merriman, Chengfeng; Zhang, Hao
- Journal of Biological Chemistry, Vol. 292, Issue 10
GABA and pancreatic beta-cells: colocalization of glutamic acid decarboxylase (GAD) and GABA with synaptic-like microvesicles suggests their role in GABA storage and secretion.
journal, May 1991
- Reetz, A.; Solimena, M.; Matteoli, M.
- The EMBO Journal, Vol. 10, Issue 5
Involvement of conventional kinesin in glucose-stimulated secretory granule movements and exocytosis in clonal pancreatic beta-cells
journal, November 2002
- Varadi, A.
- Journal of Cell Science, Vol. 115, Issue 21
A Spatial Model of Insulin-Granule Dynamics in Pancreatic β-Cells
journal, May 2015
- Dehghany, Jaber; Hoboth, Peter; Ivanova, Anna
- Traffic, Vol. 16, Issue 8
Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging
journal, November 2009
- McDermott, Gerry; Le Gros, Mark A.; Knoechel, Christian G.
- Trends in Cell Biology, Vol. 19, Issue 11
Mitochondrial morphology, topology, and membrane interactions in skeletal muscle: a quantitative three-dimensional electron microscopy study
journal, January 2013
- Picard, Martin; White, Kathryn; Turnbull, Douglass M.
- Journal of Applied Physiology, Vol. 114, Issue 2
Pancreatic beta cell lines and their applications in diabetes mellitus research
journal, January 2010
- Skelin, Masa
- ALTEX
Overexpression of native IF1 downregulates glucose-stimulated insulin secretion by pancreatic INS-1E cells
journal, January 2020
- Kahancová, Anežka; Sklenář, Filip; Ježek, Petr
- Scientific Reports, Vol. 10, Issue 1
Visualizing insulin vesicle neighborhoods in β cells by cryo–electron tomography
journal, December 2020
- Zhang, Xianjun; Carter, Stephen D.; Singla, Jitin
- Science Advances, Vol. 6, Issue 50
The structure and function of the ATP-sensitive K+ channel in insulin-secreting pancreatic beta-cells
journal, April 1999
- Miki, T.; Nagashima, K.; Seino, S.
- Journal of Molecular Endocrinology, Vol. 22, Issue 2
Nuclear Aggregation of Olfactory Receptor Genes Governs Their Monogenic Expression
journal, November 2012
- Clowney, E. Josephine; LeGros, Mark A.; Mosley, Colleen P.
- Cell, Vol. 151, Issue 4
Glucagon-Like Peptide-1 Receptor Agonists: Beta-Cell Protection or Exhaustion?
journal, July 2016
- van Raalte, Daniël H.; Verchere, C. Bruce
- Trends in Endocrinology & Metabolism, Vol. 27, Issue 7
Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo
journal, November 2016
- Le Gros, Mark A.; Clowney, E. Josephine; Magklara, Angeliki
- Cell Reports, Vol. 17, Issue 8
Compensation for Nonuniform Resolution Using Penalized-Likelihood Reconstruction in Space-Variant Imaging Systems
journal, March 2004
- Stayman, J. W.; Fessler, J. A.
- IEEE Transactions on Medical Imaging, Vol. 23, Issue 3
Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies
journal, January 2012
- Russel, Daniel; Lasker, Keren; Webb, Ben
- PLoS Biology, Vol. 10, Issue 1
Novel standards in the measurement of rat insulin granules combining electron microscopy, high-content image analysis and in silico modelling
journal, January 2012
- Fava, E.; Dehghany, J.; Ouwendijk, J.
- Diabetologia, Vol. 55, Issue 4
Metabolome Response to Glucose in the β-Cell Line INS-1 832/13
journal, February 2013
- Lorenz, Matthew A.; El Azzouny, Mahmoud A.; Kennedy, Robert T.
- Journal of Biological Chemistry, Vol. 288, Issue 15
Rapid ATP-Dependent Priming of Secretory Granules Precedes Ca 2+ -Induced Exocytosis in Mouse Pancreatic B-Cells
journal, September 1997
- Eliasson, Lena; Renström, Erik; Ding, Wei-Guang
- The Journal of Physiology, Vol. 503, Issue 2
Glucagon-Like Peptide-1 Increases Mitochondrial Biogenesis and Function in INS-1 Rat Insulinoma Cells
journal, January 2015
- Kang, Mi Yeon; Oh, Tae Jung; Cho, Young Min
- Endocrinology and Metabolism, Vol. 30, Issue 2
Visualizing the molecular sociology at the HeLa cell nuclear periphery
journal, February 2016
- Mahamid, J.; Pfeffer, S.; Schaffer, M.
- Science, Vol. 351, Issue 6276
Biological soft X-ray tomography on beamline 2.1 at the Advanced Light Source
journal, October 2014
- Le Gros, Mark A.; McDermott, Gerry; Cinquin, Bertrand P.
- Journal of Synchrotron Radiation, Vol. 21, Issue 6
Large-scale electron microscopy database for human type 1 diabetes
journal, May 2020
- de Boer, Pascal; Pirozzi, Nicole M.; Wolters, Anouk H. G.
- Nature Communications, Vol. 11, Issue 1
Expedited approaches to whole cell electron tomography and organelle mark-up in situ in high-pressure frozen pancreatic islets
journal, March 2008
- Noske, Andrew B.; Costin, Adam J.; Morgan, Garry P.
- Journal of Structural Biology, Vol. 161, Issue 3
Synaptic like microvesicles : Do they participate in regulated exocytosis?
journal, September 1995
- Llona, I.
- Neurochemistry International, Vol. 27, Issue 3
Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell
journal, March 2018
- Singla, Jitin; McClary, Kyle M.; White, Kate L.
- Cell, Vol. 173, Issue 1
A subcellular map of the human proteome
journal, May 2017
- Thul, Peter J.; Åkesson, Lovisa; Wiking, Mikaela
- Science, Vol. 356, Issue 6340
Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins
journal, May 2014
- Wilhelm, B. G.; Mandad, S.; Truckenbrodt, S.
- Science, Vol. 344, Issue 6187
Beta-cell mitochondria in the regulation of insulin secretion: a new culprit in Type II diabetes
journal, March 2000
- Wollheim, C. B.
- Diabetologia, Vol. 43, Issue 3
X-ray tomography of whole cells
journal, October 2005
- Le Gros, Mark A.; McDermott, Gerry; Larabell, Carolyn A.
- Current Opinion in Structural Biology, Vol. 15, Issue 5
Overnight inhibition of insulin secretion restores pulsatility and proinsulin/insulin ratio in type 2 diabetes
journal, September 2000
- Laedtke, Thomas; Kjems, Lise; Pørksen, Niels
- American Journal of Physiology-Endocrinology and Metabolism, Vol. 279, Issue 3
Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy
journal, September 2018
- Ounkomol, Chawin; Seshamani, Sharmishtaa; Maleckar, Mary M.
- Nature Methods, Vol. 15, Issue 11
Global, quantitative and dynamic mapping of protein subcellular localization
journal, June 2016
- Itzhak, Daniel N.; Tyanova, Stefka; Cox, Jürgen
- eLife, Vol. 5
Golgi apparatus analyzed by cryo-electron microscopy
journal, August 2013
- Han, Hong-Mei; Bouchet-Marquis, Cedric; Huebinger, Jan
- Histochemistry and Cell Biology, Vol. 140, Issue 4
Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell: Mesoscale imaging with cryo-light and X-rays
journal, November 2016
- Ekman, Axel A.; Chen, Jian-Hua; Guo, Jessica
- Biology of the Cell, Vol. 109, Issue 1
Insulin crystallization depends on zinc transporter ZnT8 expression, but is not required for normal glucose homeostasis in mice
journal, August 2009
- Lemaire, K.; Ravier, M. A.; Schraenen, A.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 35
Glucose Sensitivity and Metabolism-Secretion Coupling Studied during Two-Year Continuous Culture in INS-1E Insulinoma Cells
journal, February 2004
- Merglen, Arnaud; Theander, Sten; Rubi, Blanca
- Endocrinology, Vol. 145, Issue 2
PSF correction in soft X-ray tomography
journal, October 2018
- Ekman, Axel; Weinhardt, Venera; Chen, Jian-Hua
- Journal of Structural Biology, Vol. 204, Issue 1
Automatic alignment and reconstruction of images for soft X-ray tomography
journal, February 2012
- Parkinson, Dilworth Y.; Knoechel, Christian; Yang, Chao
- Journal of Structural Biology, Vol. 177, Issue 2
Mitochondrial function in normal and diabetic β-cells
journal, December 2001
- Maechler, Pierre; Wollheim, Claes B.
- Nature, Vol. 414, Issue 6865
Visualizing Intracellular Organelle and Cytoskeletal Interactions at Nanoscale Resolution on Millisecond Timescales
journal, November 2018
- Guo, Yuting; Li, Di; Zhang, Siwei
- Cell, Vol. 175, Issue 5
Insulin granule dynamics in pancreatic beta cells
journal, August 2003
- Rorsman, P.; Renstr�m, E.
- Diabetologia, Vol. 46, Issue 8