Steelhead ( Oncorhynchus mykiss ) lineages and sexes show variable patterns of association of adult migration timing and age‐at‐maturity traits with two genomic regions

Willis, Stuart C.; Hess, Jon E.; Fryer, Jeff K.; Whiteaker, John M.; Brun, Chris; Gerstenberger, Ryan; Narum, Shawn R.

doi:10.1111/eva.13088

Title: Steelhead ( Oncorhynchus mykiss ) lineages and sexes show variable patterns of association of adult migration timing and age‐at‐maturity traits with two genomic regions

Journal Article · 27 August 2020 · Evolutionary Applications

DOI: https://doi.org/10.1111/eva.13088 · OSTI ID:1724431

^[1]; Hess, Jon E. ^[1]; Fryer, Jeff K. ^[2]; Whiteaker, John M. ^[2]; Brun, Chris ^[3]; Gerstenberger, Ryan ^[3];

^[1]

Hagerman Genetics Laboratory Columbia River Inter‐Tribal Fish Commission Hagerman ID USA
Fishery Science Department Columbia River Inter‐Tribal Fish Commission Portland OR USA
Branch of Natural Resources – Fisheries, Confederated Tribes of Warm Springs Portland OR USA

Abstract As life history diversity plays a critical role in supporting the resilience of exploited populations, understanding the genetic basis of those life history variations is important for conservation management. However, effective application requires a robust understanding of the strength and universality of genetic associations. Here, we examine genetic variation of single nucleotide polymorphisms in genomic regions previously associated with migration phenology and age‐at‐maturity in steelhead ( Oncorhynchus mykiss ) from the Columbia River. We found chromosome 28 markers (GREB1L, ROCK1 genes) explained significant variance in migration timing in both coastal and inland steelhead. However, strength of association was much greater in coastal than inland steelhead ( R ² 0.51 vs. 0.08), suggesting that genomic background and challenging inland migration pathways may act to moderate effects of this region. Further, we found that chromosome 25 candidate markers (SIX6 gene) were significantly associated with age and size at first return migration for inland steelhead, and this pattern was mediated by sex in a predictable pattern (males R ² = 0.139–0.170; females R ² = 0.096–0.111). While this encourages using these candidate regions in predicting life history characteristics, we suggest that stock‐specific associations and haplotype frequencies will be useful in guiding implementation of genetic assays to inform management.

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Sponsoring Organization:: USDOE

OSTI ID:: 1724431

Journal Information:: Evolutionary Applications, Journal Name: Evolutionary Applications Journal Issue: 10 Vol. 13; ISSN 1752-4571

Publisher:: Wiley-BlackwellCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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