Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics
Abstract
Abstract Global soil organic carbon (SOC) stocks may decline with a warmer climate. However, model projections of changes in SOC due to climate warming depend on microbially-driven processes that are usually parameterized based on laboratory incubations. To assess how lab-scale incubation datasets inform model projections over decades, we optimized five microbially-relevant parameters in the Microbial-ENzyme Decomposition (MEND) model using 16 short-term glucose (6-day), 16 short-term cellulose (30-day) and 16 long-term cellulose (729-day) incubation datasets with soils from forests and grasslands across contrasting soil types. Our analysis identified consistently higher parameter estimates given the short-term versus long-term datasets. Implementing the short-term and long-term parameters, respectively, resulted in SOC loss (–8.2 ± 5.1% or –3.9 ± 2.8%), and minor SOC gain (1.8 ± 1.0%) in response to 5 °C warming, while only the latter is consistent with a meta-analysis of 149 field warming observations (1.6 ± 4.0%). Comparing multiple subsets of cellulose incubations (i.e., 6, 30, 90, 180, 360, 480 and 729-day) revealed comparable projections to the observed long-term SOC changes under warming only on 480- and 729-day. Integrating multi-year datasets of soil incubations (e.g., > 1.5 years) with microbial models can thus achieve more reasonable parameterization of key microbial processes and subsequently boost the accuracy and confidence of long-term SOCmore »
- Authors:
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
- OSTI Identifier:
- 1716534
- Alternate Identifier(s):
- OSTI ID: 1731058
- Grant/Contract Number:
- AC05-00OR22725; 1900885; SC0014079; 4000148926
- Resource Type:
- Published Article
- Journal Name:
- Nature Communications
- Additional Journal Information:
- Journal Name: Nature Communications Journal Volume: 11 Journal Issue: 1; Journal ID: ISSN 2041-1723
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United Kingdom
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; biogeochemistry; ecology
Citation Formats
Jian, Siyang, Li, Jianwei, Wang, Gangsheng, Kluber, Laurel A., Schadt, Christopher W., Liang, Junyi, and Mayes, Melanie A. Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics. United Kingdom: N. p., 2020.
Web. doi:10.1038/s41467-020-19428-y.
Jian, Siyang, Li, Jianwei, Wang, Gangsheng, Kluber, Laurel A., Schadt, Christopher W., Liang, Junyi, & Mayes, Melanie A. Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics. United Kingdom. https://doi.org/10.1038/s41467-020-19428-y
Jian, Siyang, Li, Jianwei, Wang, Gangsheng, Kluber, Laurel A., Schadt, Christopher W., Liang, Junyi, and Mayes, Melanie A. Tue .
"Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics". United Kingdom. https://doi.org/10.1038/s41467-020-19428-y.
@article{osti_1716534,
title = {Multi-year incubation experiments boost confidence in model projections of long-term soil carbon dynamics},
author = {Jian, Siyang and Li, Jianwei and Wang, Gangsheng and Kluber, Laurel A. and Schadt, Christopher W. and Liang, Junyi and Mayes, Melanie A.},
abstractNote = {Abstract Global soil organic carbon (SOC) stocks may decline with a warmer climate. However, model projections of changes in SOC due to climate warming depend on microbially-driven processes that are usually parameterized based on laboratory incubations. To assess how lab-scale incubation datasets inform model projections over decades, we optimized five microbially-relevant parameters in the Microbial-ENzyme Decomposition (MEND) model using 16 short-term glucose (6-day), 16 short-term cellulose (30-day) and 16 long-term cellulose (729-day) incubation datasets with soils from forests and grasslands across contrasting soil types. Our analysis identified consistently higher parameter estimates given the short-term versus long-term datasets. Implementing the short-term and long-term parameters, respectively, resulted in SOC loss (–8.2 ± 5.1% or –3.9 ± 2.8%), and minor SOC gain (1.8 ± 1.0%) in response to 5 °C warming, while only the latter is consistent with a meta-analysis of 149 field warming observations (1.6 ± 4.0%). Comparing multiple subsets of cellulose incubations (i.e., 6, 30, 90, 180, 360, 480 and 729-day) revealed comparable projections to the observed long-term SOC changes under warming only on 480- and 729-day. Integrating multi-year datasets of soil incubations (e.g., > 1.5 years) with microbial models can thus achieve more reasonable parameterization of key microbial processes and subsequently boost the accuracy and confidence of long-term SOC projections.},
doi = {10.1038/s41467-020-19428-y},
journal = {Nature Communications},
number = 1,
volume = 11,
place = {United Kingdom},
year = {Tue Nov 17 00:00:00 EST 2020},
month = {Tue Nov 17 00:00:00 EST 2020}
}
https://doi.org/10.1038/s41467-020-19428-y
Works referenced in this record:
Kinetics of thermophilic, anaerobic oxidation of straight and branched chain butyrate and valerate
journal, September 2003
- Batstone, D. J.; Pind, P. F.; Angelidaki, I.
- Biotechnology and Bioengineering, Vol. 84, Issue 2
Multiple models and experiments underscore large uncertainty in soil carbon dynamics
journal, October 2018
- Sulman, Benjamin N.; Moore, Jessica A. M.; Abramoff, Rose
- Biogeochemistry, Vol. 141, Issue 2
Temperature sensitivity of soil respiration rates enhanced by microbial community response
journal, September 2014
- Karhu, Kristiina; Auffret, Marc D.; Dungait, Jennifer A. J.
- Nature, Vol. 513, Issue 7516
Microbial mediation of carbon-cycle feedbacks to climate warming
journal, December 2011
- Zhou, Jizhong; Xue, Kai; Xie, Jianping
- Nature Climate Change, Vol. 2, Issue 2
Incorporating microbial dormancy dynamics into soil decomposition models to improve quantification of soil carbon dynamics of northern temperate forests
journal, December 2015
- He, Yujie; Yang, Jinyan; Zhuang, Qianlai
- Journal of Geophysical Research: Biogeosciences, Vol. 120, Issue 12
Soil carbon sensitivity to temperature and carbon use efficiency compared across microbial-ecosystem models of varying complexity
journal, January 2014
- Li, Jianwei; Wang, Gangsheng; Allison, Steven D.
- Biogeochemistry, Vol. 119, Issue 1-3
Clarifying the interpretation of carbon use efficiency in soil through methods comparison
journal, January 2019
- Geyer, Kevin M.; Dijkstra, Paul; Sinsabaugh, Robert
- Soil Biology and Biochemistry, Vol. 128
Crowther et al. reply
journal, February 2018
- Crowther, T. W.; Machmuller, M. B.; Carey, J. C.
- Nature, Vol. 554, Issue 7693
Increasing microbial carbon use efficiency with warming predicts soil heterotrophic respiration globally
journal, July 2019
- Ye, Jian‐Sheng; Bradford, Mark A.; Dacal, Marina
- Global Change Biology, Vol. 25, Issue 10
Stoichiometry of microbial carbon use efficiency in soils
journal, May 2016
- Sinsabaugh, Robert L.; Turner, Benjamin L.; Talbot, Jennifer M.
- Ecological Monographs, Vol. 86, Issue 2
Quantifying global soil carbon losses in response to warming
journal, November 2016
- Crowther, T. W.; Todd-Brown, K. E. O.; Rowe, C. W.
- Nature, Vol. 540, Issue 7631
Estimation of active soil microbial biomass by mathematical analysis of respiration curves: Calibration of the test procedure
journal, January 1987
- Van De Werf, H.; Verstraete, W.
- Soil Biology and Biochemistry, Vol. 19, Issue 3
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?
journal, February 2013
- Cotrufo, M. Francesca; Wallenstein, Matthew D.; Boot, Claudia M.
- Global Change Biology, Vol. 19, Issue 4
Experimental Identification and Quantification of Glucose Metabolism in Seven Bacterial Species
journal, February 2005
- Fuhrer, T.; Fischer, E.; Sauer, U.
- Journal of Bacteriology, Vol. 187, Issue 5
Estimating the biomass of microbial functional groups using rates of growth-related soil respiration
journal, December 1996
- Colores, Gregory M.; Schmidt, Steven K.; Fisk, Melany C.
- Soil Biology and Biochemistry, Vol. 28, Issue 12
Ecological forecasting and data assimilation in a data-rich era
journal, July 2011
- Luo, Yiqi; Ogle, Kiona; Tucker, Colin
- Ecological Applications, Vol. 21, Issue 5
Optimal metabolic regulation along resource stoichiometry gradients
journal, July 2017
- Manzoni, Stefano; Čapek, Petr; Mooshammer, Maria
- Ecology Letters, Vol. 20, Issue 9
Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world
journal, October 2017
- Melillo, J. M.; Frey, S. D.; DeAngelis, K. M.
- Science, Vol. 358, Issue 6359
Mechanisms of the Priming Effect in a Savannah Soil Amended with Cellulose
journal, January 2004
- Fontaine, Sébastien; Bardoux, Gérard; Benest, Danielle
- Soil Science Society of America Journal, Vol. 68, Issue 1
Plant, microbial and ecosystem carbon use efficiencies interact to stabilize microbial growth as a fraction of gross primary production
journal, February 2017
- Sinsabaugh, Robert L.; Moorhead, Daryl L.; Xu, Xiaofeng
- New Phytologist, Vol. 214, Issue 4
Changes in soil organic carbon storage predicted by Earth system models during the 21st century
journal, January 2014
- Todd-Brown, K. E. O.; Randerson, J. T.; Hopkins, F.
- Biogeosciences, Vol. 11, Issue 8
Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter
journal, February 2016
- Geyer, Kevin M.; Kyker-Snowman, Emily; Grandy, A. Stuart
- Biogeochemistry, Vol. 127, Issue 2-3
Soil moisture drives microbial controls on carbon decomposition in two subtropical forests
journal, March 2019
- Wang, Gangsheng; Huang, Wenjuan; Mayes, Melanie A.
- Soil Biology and Biochemistry, Vol. 130
Substrate quality and concentration control decomposition and microbial strategies in a model soil system
journal, May 2019
- Schnecker, Jörg; Bowles, Timothy; Hobbie, Erik A.
- Biogeochemistry, Vol. 144, Issue 1
Microbial dormancy improves development and experimental validation of ecosystem model
journal, July 2014
- Wang, Gangsheng; Jagadamma, Sindhu; Mayes, Melanie A.
- The ISME Journal, Vol. 9, Issue 1
Long-term sensitivity of soil carbon turnover to warming
journal, January 2005
- Knorr, W.; Prentice, I. C.; House, J. I.
- Nature, Vol. 433, Issue 7023
Global soil carbon projections are improved by modelling microbial processes
journal, July 2013
- Wieder, William R.; Bonan, Gordon B.; Allison, Steven D.
- Nature Climate Change, Vol. 3, Issue 10
Global pattern and controls of soil microbial metabolic quotient
journal, May 2017
- Xu, Xiaofeng; Schimel, Joshua P.; Janssens, Ivan A.
- Ecological Monographs, Vol. 87, Issue 3
Substrate quality alters the microbial mineralization of added substrate and soil organic carbon
journal, January 2014
- Jagadamma, S.; Mayes, M. A.; Steinweg, J. M.
- Biogeosciences, Vol. 11, Issue 17
Representation of Dormant and Active Microbial Dynamics for Ecosystem Modeling
journal, February 2014
- Wang, Gangsheng; Mayes, Melanie A.; Gu, Lianhong
- PLoS ONE, Vol. 9, Issue 2
Accelerated microbial turnover but constant growth efficiency with warming in soil
journal, September 2014
- Hagerty, Shannon B.; van Groenigen, Kees Jan; Allison, Steven D.
- Nature Climate Change, Vol. 4, Issue 10
Dormancy in non-sporulating bacteria
journal, April 1993
- Kaprelyants, Arseny S.; Gottschal, Jan C.; Kell, Douglas B.
- FEMS Microbiology Letters, Vol. 104, Issue 3-4
The contentious nature of soil organic matter
journal, November 2015
- Lehmann, Johannes; Kleber, Markus
- Nature, Vol. 528, Issue 7580
Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis
journal, October 2016
- Jian, Siyang; Li, Jianwei; Chen, Ji
- Soil Biology and Biochemistry, Vol. 101
The Millennial model: in search of measurable pools and transformations for modeling soil carbon in the new century
journal, December 2017
- Abramoff, Rose; Xu, Xiaofeng; Hartman, Melannie
- Biogeochemistry, Vol. 137, Issue 1-2
Toward more realistic projections of soil carbon dynamics by Earth system models: SOIL CARBON MODELING
journal, January 2016
- Luo, Yiqi; Ahlström, Anders; Allison, Steven D.
- Global Biogeochemical Cycles, Vol. 30, Issue 1
Soil carbon saturation: Implications for measurable carbon pool dynamics in long-term incubations
journal, February 2009
- Stewart, Catherine E.; Paustian, Keith; Conant, Richard T.
- Soil Biology and Biochemistry, Vol. 41, Issue 2
Microbial community-level regulation explains soil carbon responses to long-term litter manipulations
journal, October 2017
- Georgiou, Katerina; Abramoff, Rose Z.; Harte, John
- Nature Communications, Vol. 8, Issue 1
The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: a cross-latitudinal study
journal, January 2012
- German, Donovan P.; Marcelo, Kathleen R. B.; Stone, Madeleine M.
- Global Change Biology, Vol. 18, Issue 4
Causes of variation in soil carbon simulations from CMIP5 Earth system models and comparison with observations
journal, January 2013
- Todd-Brown, K. E. O.; Randerson, J. T.; Post, W. M.
- Biogeosciences, Vol. 10, Issue 3
Reduced carbon use efficiency and increased microbial turnover with soil warming
journal, December 2018
- Li, Jianwei; Wang, Gangsheng; Mayes, Melanie A.
- Global Change Biology
SWAT modeling with uncertainty and cluster analyses of tillage impacts on hydrological processes
journal, May 2013
- Wang, Gangsheng; Barber, Michael E.; Chen, Shulin
- Stochastic Environmental Research and Risk Assessment, Vol. 28, Issue 2
Effects of three years of soil warming and shading on the rate of soil respiration: substrate availability and not thermal acclimation mediates observed response
journal, August 2007
- Hartley, Iain P.; Heinemeyer, Andreas; Ineson, Phil
- Global Change Biology, Vol. 13, Issue 8
Soil Warming and Carbon-Cycle Feedbacks to the Climate System
journal, December 2002
- Melillo, J. M.
- Science, Vol. 298, Issue 5601
Characterization of a substrate-induced respiration method for measuring fungal, bacterial and total microbial biomass on plant residues
journal, February 1991
- Beare, M. H.; Neely, C. L.; Coleman, D. C.
- Agriculture, Ecosystems & Environment, Vol. 34, Issue 1-4
Stabilization mechanisms of soil organic matter: Implications for C-saturation of soils
journal, January 2002
- Six, J.; Conant, R. T.; Paul, E. A.
- Plant and Soil, Vol. 241, Issue 2, p. 155-176
Microbe-driven turnover offsets mineral-mediated storage of soil carbon under elevated CO2
journal, November 2014
- Sulman, Benjamin N.; Phillips, Richard P.; Oishi, A. Christopher
- Nature Climate Change, Vol. 4, Issue 12
Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses
journal, January 2013
- Wang, Gangsheng; Post, Wilfred M.; Mayes, Melanie A.
- Ecological Applications, Vol. 23, Issue 1
Explicitly representing soil microbial processes in Earth system models: Soil microbes in earth system models
journal, October 2015
- Wieder, William R.; Allison, Steven D.; Davidson, Eric A.
- Global Biogeochemical Cycles, Vol. 29, Issue 10
Compensatory Thermal Adaptation of Soil Microbial Respiration Rates in Global Croplands
journal, May 2020
- Ye, Jian‐Sheng; Bradford, Mark A.; Maestre, Fernando T.
- Global Biogeochemical Cycles, Vol. 34, Issue 6
A review on parameterization and uncertainty in modeling greenhouse gas emissions from soil
journal, January 2012
- Wang, Gangsheng; Chen, Shulin
- Geoderma, Vol. 170
Soil-carbon response to warming dependent on microbial physiology
journal, April 2010
- Allison, Steven D.; Wallenstein, Matthew D.; Bradford, Mark A.
- Nature Geoscience, Vol. 3, Issue 5
Soil Organic Matter Temperature Sensitivity Cannot be Directly Inferred From Spatial Gradients
journal, June 2019
- Abramoff, Rose Z.; Torn, Margaret S.; Georgiou, Katerina
- Global Biogeochemical Cycles, Vol. 33, Issue 6
Microbial biomass, functional capacity, and community structure after 12 years of soil warming
journal, November 2008
- Frey, S. D.; Drijber, R.; Smith, H.
- Soil Biology and Biochemistry, Vol. 40, Issue 11
Modeling Global Soil Carbon and Soil Microbial Carbon by Integrating Microbial Processes into the Ecosystem Process Model TRIPLEX-GHG: GLOBAL SOIL CARBON AND MICROBIAL CARBON
journal, October 2017
- Wang, Kefeng; Peng, Changhui; Zhu, Qiuan
- Journal of Advances in Modeling Earth Systems, Vol. 9, Issue 6
Reversible transition between active and dormant microbial states in soil
journal, July 2001
- Stenström, J.
- FEMS Microbiology Ecology, Vol. 36, Issue 2-3
Carbon use efficiency of microbial communities: stoichiometry, methodology and modelling
journal, April 2013
- Sinsabaugh, Robert L.; Manzoni, Stefano; Moorhead, Daryl L.
- Ecology Letters, Vol. 16, Issue 7