Harnessing the power of an X-ray laser for serial crystallography of membrane proteins crystallized in lipidic cubic phase
Abstract
Serial femtosecond crystallography (SFX) with X-ray free-electron lasers (XFELs) has proven highly successful for structure determination of challenging membrane proteins crystallized in lipidic cubic phase; however, like most techniques, it has limitations. Here we attempt to address some of these limitations related to the use of a vacuum chamber and the need for attenuation of the XFEL beam, in order to further improve the efficiency of this method. Using an optimized SFX experimental setup in a helium atmosphere, the room-temperature structure of the adenosine A2A receptor (A2AAR) at 2.0 Å resolution is determined and compared with previous A2AAR structures determined in vacuum and/or at cryogenic temperatures. Specifically, the capability of utilizing high XFEL beam transmissions is demonstrated, in conjunction with a high dynamic range detector, to collect high-resolution SFX data while reducing crystalline material consumption and shortening the collection time required for a complete dataset. The experimental setup presented herein can be applied to future SFX applications for protein nanocrystal samples to aid in structure-based discovery efforts of therapeutic targets that are difficult to crystallize.
- Authors:
- Publication Date:
- Research Org.:
- SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States). Linac Coherent Light Source (LCLS)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES); National Institutes of Health (NIH); National Science Foundation (NSF)
- OSTI Identifier:
- 1675009
- Alternate Identifier(s):
- OSTI ID: 1768894
- Grant/Contract Number:
- AC02-76SF00515; R35 GM127086; R01 GM124152; R21 DA042298; 1231306
- Resource Type:
- Published Article
- Journal Name:
- IUCrJ
- Additional Journal Information:
- Journal Name: IUCrJ Journal Volume: 7 Journal Issue: 6; Journal ID: ISSN 2052-2525
- Publisher:
- International Union of Crystallography
- Country of Publication:
- United Kingdom
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; G-protein-coupled receptors; membrane proteins; XFELs; serial femtosecond crystallography; adenosine A2A receptors; lipidic cubic phases; high dynamic range detectors.
Citation Formats
Lee, Ming-Yue, Geiger, James, Ishchenko, Andrii, Han, Gye Won, Barty, Anton, White, Thomas A., Gati, Cornelius, Batyuk, Alexander, Hunter, Mark S., Aquila, Andrew, Boutet, Sébastien, Weierstall, Uwe, Cherezov, Vadim, and Liu, Wei. Harnessing the power of an X-ray laser for serial crystallography of membrane proteins crystallized in lipidic cubic phase. United Kingdom: N. p., 2020.
Web. doi:10.1107/S2052252520012701.
Lee, Ming-Yue, Geiger, James, Ishchenko, Andrii, Han, Gye Won, Barty, Anton, White, Thomas A., Gati, Cornelius, Batyuk, Alexander, Hunter, Mark S., Aquila, Andrew, Boutet, Sébastien, Weierstall, Uwe, Cherezov, Vadim, & Liu, Wei. Harnessing the power of an X-ray laser for serial crystallography of membrane proteins crystallized in lipidic cubic phase. United Kingdom. https://doi.org/10.1107/S2052252520012701
Lee, Ming-Yue, Geiger, James, Ishchenko, Andrii, Han, Gye Won, Barty, Anton, White, Thomas A., Gati, Cornelius, Batyuk, Alexander, Hunter, Mark S., Aquila, Andrew, Boutet, Sébastien, Weierstall, Uwe, Cherezov, Vadim, and Liu, Wei. Thu .
"Harnessing the power of an X-ray laser for serial crystallography of membrane proteins crystallized in lipidic cubic phase". United Kingdom. https://doi.org/10.1107/S2052252520012701.
@article{osti_1675009,
title = {Harnessing the power of an X-ray laser for serial crystallography of membrane proteins crystallized in lipidic cubic phase},
author = {Lee, Ming-Yue and Geiger, James and Ishchenko, Andrii and Han, Gye Won and Barty, Anton and White, Thomas A. and Gati, Cornelius and Batyuk, Alexander and Hunter, Mark S. and Aquila, Andrew and Boutet, Sébastien and Weierstall, Uwe and Cherezov, Vadim and Liu, Wei},
abstractNote = {Serial femtosecond crystallography (SFX) with X-ray free-electron lasers (XFELs) has proven highly successful for structure determination of challenging membrane proteins crystallized in lipidic cubic phase; however, like most techniques, it has limitations. Here we attempt to address some of these limitations related to the use of a vacuum chamber and the need for attenuation of the XFEL beam, in order to further improve the efficiency of this method. Using an optimized SFX experimental setup in a helium atmosphere, the room-temperature structure of the adenosine A2A receptor (A2AAR) at 2.0 Å resolution is determined and compared with previous A2AAR structures determined in vacuum and/or at cryogenic temperatures. Specifically, the capability of utilizing high XFEL beam transmissions is demonstrated, in conjunction with a high dynamic range detector, to collect high-resolution SFX data while reducing crystalline material consumption and shortening the collection time required for a complete dataset. The experimental setup presented herein can be applied to future SFX applications for protein nanocrystal samples to aid in structure-based discovery efforts of therapeutic targets that are difficult to crystallize.},
doi = {10.1107/S2052252520012701},
journal = {IUCrJ},
number = 6,
volume = 7,
place = {United Kingdom},
year = {Thu Oct 15 00:00:00 EDT 2020},
month = {Thu Oct 15 00:00:00 EDT 2020}
}
https://doi.org/10.1107/S2052252520012701
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