Impacts of Soil Microbiome Variations on Root Colonization by Fungi and Bacteria and on the Metabolome of Populus tremula × alba
Abstract
Trees depend on beneficial interactions between roots and soil microbes for their nutrition and protection against stresses. The soil microbiome provides the main reservoir of microbes for root colonization and is subject to natural variations that can affect its composition. It is not clear whether the tree’s root system is able to buffer the natural variations occurring in the soil microbiome to capture a stable and effective microbiome or whether these variations affect its microbiome to impact its physiology. To address this question, we planted cuttings of Gray Poplar (Populus tremula × alba clone 717-1B4) in natural soil taken from a poplar stand under the same tree over two consecutive years and grew them in a greenhouse. We analyzed the soil and root microbiomes by high throughput Illumina MiSeq sequencing of fungal rDNA internal transcribed spacer and bacterial 16S rRNA amplicons and we characterized the root metabolome by gas chromatography-mass spectrometry. Soil and root microbial communities significantly shifted over the 2 years. A modification of the balance between endophytes, saprophytes, and mycorrhizal fungi occurred in the roots as well as a replacement of some dominant operational taxonomic units by others. These modifications were correlated with a significant alteration of themore »
- Authors:
-
- Univ. de Lorraine, INRAE, UMR IAM, Champenoux (France)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Univ. de Lorraine, INRAE, UMR IAM, Champenoux (France); Beijing Forestry Univ.,(China). Beijing Advanced Innovation Center for Tree Breeding by Molecular Design
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1649212
- Grant/Contract Number:
- AC05-00OR22725
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Phytobiomes Journal
- Additional Journal Information:
- Journal Volume: 4; Journal Issue: 2; Journal ID: ISSN 2471-2906
- Publisher:
- American Phytopathological Society (APS)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Endophyte; ectomychorrhizal fungi; metabarcoding; metabolome; microbiome; populus; symbiosis
Citation Formats
Mangeot-Peter, L., Tschaplinski, T. J., Engle, N. L., Veneault-Fourrey, C., Martin, F., and Deveau, A. Impacts of Soil Microbiome Variations on Root Colonization by Fungi and Bacteria and on the Metabolome of Populus tremula × alba. United States: N. p., 2020.
Web. doi:10.1094/pbiomes-08-19-0042-r.
Mangeot-Peter, L., Tschaplinski, T. J., Engle, N. L., Veneault-Fourrey, C., Martin, F., & Deveau, A. Impacts of Soil Microbiome Variations on Root Colonization by Fungi and Bacteria and on the Metabolome of Populus tremula × alba. United States. https://doi.org/10.1094/pbiomes-08-19-0042-r
Mangeot-Peter, L., Tschaplinski, T. J., Engle, N. L., Veneault-Fourrey, C., Martin, F., and Deveau, A. Tue .
"Impacts of Soil Microbiome Variations on Root Colonization by Fungi and Bacteria and on the Metabolome of Populus tremula × alba". United States. https://doi.org/10.1094/pbiomes-08-19-0042-r. https://www.osti.gov/servlets/purl/1649212.
@article{osti_1649212,
title = {Impacts of Soil Microbiome Variations on Root Colonization by Fungi and Bacteria and on the Metabolome of Populus tremula × alba},
author = {Mangeot-Peter, L. and Tschaplinski, T. J. and Engle, N. L. and Veneault-Fourrey, C. and Martin, F. and Deveau, A.},
abstractNote = {Trees depend on beneficial interactions between roots and soil microbes for their nutrition and protection against stresses. The soil microbiome provides the main reservoir of microbes for root colonization and is subject to natural variations that can affect its composition. It is not clear whether the tree’s root system is able to buffer the natural variations occurring in the soil microbiome to capture a stable and effective microbiome or whether these variations affect its microbiome to impact its physiology. To address this question, we planted cuttings of Gray Poplar (Populus tremula × alba clone 717-1B4) in natural soil taken from a poplar stand under the same tree over two consecutive years and grew them in a greenhouse. We analyzed the soil and root microbiomes by high throughput Illumina MiSeq sequencing of fungal rDNA internal transcribed spacer and bacterial 16S rRNA amplicons and we characterized the root metabolome by gas chromatography-mass spectrometry. Soil and root microbial communities significantly shifted over the 2 years. A modification of the balance between endophytes, saprophytes, and mycorrhizal fungi occurred in the roots as well as a replacement of some dominant operational taxonomic units by others. These modifications were correlated with a significant alteration of the levels of about 10% of primary and secondary metabolites, suggesting that natural fluctuations in soil microbial communities can have a profound impact on tree root metabolism and physiology. Tree roots functioning may thus be indirectly strongly affected by the effects of future extreme climatic variations on the soil microbiome.},
doi = {10.1094/pbiomes-08-19-0042-r},
journal = {Phytobiomes Journal},
number = 2,
volume = 4,
place = {United States},
year = {Tue Apr 28 00:00:00 EDT 2020},
month = {Tue Apr 28 00:00:00 EDT 2020}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 16 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
mixOmics: An R package for ‘omics feature selection and multiple data integration
journal, November 2017
- Rohart, Florian; Gautier, Benoît; Singh, Amrit
- PLOS Computational Biology, Vol. 13, Issue 11
Understanding and engineering beneficial plant-microbe interactions: plant growth promotion in energy crops
journal, November 2014
- Farrar, Kerrie; Bryant, David; Cope-Selby, Naomi
- Plant Biotechnology Journal, Vol. 12, Issue 9
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
journal, May 2019
- Veach, Allison M.; Morris, Reese; Yip, Daniel Z.
- Microbiome, Vol. 7, Issue 1
Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types
journal, July 2011
- Gottel, Neil R.; Castro, Hector F.; Kerley, Marilyn
- Applied and Environmental Microbiology, Vol. 77, Issue 17
Whole-genome draft assembly of Populus tremula x P. alba clone INRA 717-1B4
journal, December 2016
- Mader, Malte; Le Paslier, Marie-Christine; Bounon, Rémi
- Silvae Genetica, Vol. 65, Issue 2
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
journal, April 2013
- McMurdie, Paul J.; Holmes, Susan
- PLoS ONE, Vol. 8, Issue 4
Populus trichocarpa and Populus deltoides Exhibit Different Metabolomic Responses to Colonization by the Symbiotic Fungus Laccaria bicolor
journal, June 2014
- Tschaplinski, Timothy J.; Plett, Jonathan M.; Engle, Nancy L.
- Molecular Plant-Microbe Interactions, Vol. 27, Issue 6
Drought Stress and Root-Associated Bacterial Communities
journal, January 2018
- Naylor, Dan; Coleman-Derr, Devin
- Frontiers in Plant Science, Vol. 8
Plant root-microbe communication in shaping root microbiomes
journal, January 2016
- Lareen, Andrew; Burton, Frances; Schäfer, Patrick
- Plant Molecular Biology, Vol. 90, Issue 6
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
journal, May 2016
- Afgan, Enis; Baker, Dannon; van den Beek, Marius
- Nucleic Acids Research, Vol. 44, Issue W1
An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots
journal, February 2020
- Basso, Veronica; Kohler, Annegret; Miyauchi, Shingo
- Plant, Cell & Environment, Vol. 43, Issue 4
Beyond plant defense: insights on the potential of salicylic and methylsalicylic acid to contain growth of the phytopathogen Botrytis cinerea
journal, October 2015
- Dieryckx, Cindy; Gaudin, Vanessa; Dupuy, Jean-William
- Frontiers in Plant Science, Vol. 6
A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013
- Shakya, Migun; Gottel, Neil; Castro, Hector
- PLoS ONE, Vol. 8, Issue 10
Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence
journal, August 2017
- Colin, Y.; Nicolitch, O.; Van Nostrand, J. D.
- Scientific Reports, Vol. 7, Issue 1
Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies
journal, February 2017
- Meena, Kamlesh K.; Sorty, Ajay M.; Bitla, Utkarsh M.
- Frontiers in Plant Science, Vol. 8
Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition
journal, July 2019
- Liao, Hui-Ling; Bonito, Gregory; Rojas, J. Alejandro
- Molecular Plant-Microbe Interactions®, Vol. 32, Issue 7
Embracing the unknown: disentangling the complexities of the soil microbiome
journal, August 2017
- Fierer, Noah
- Nature Reviews Microbiology, Vol. 15, Issue 10
Practical innovations for high-throughput amplicon sequencing
journal, September 2013
- Lundberg, Derek S.; Yourstone, Scott; Mieczkowski, Piotr
- Nature Methods, Vol. 10, Issue 10
Fungal endophyte infection of ryegrass reprograms host metabolism and alters development
journal, August 2015
- Dupont, Pierre‐Yves; Eaton, Carla J.; Wargent, Jason J.
- New Phytologist, Vol. 208, Issue 4
The Role of Soil Microorganisms in Plant Mineral Nutrition—Current Knowledge and Future Directions
journal, September 2017
- Jacoby, Richard; Peukert, Manuela; Succurro, Antonella
- Frontiers in Plant Science, Vol. 8
Manipulating the soil microbiome to increase soil health and plant fertility
journal, May 2012
- Chaparro, Jacqueline M.; Sheflin, Amy M.; Manter, Daniel K.
- Biology and Fertility of Soils, Vol. 48, Issue 5
The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms
journal, February 2008
- Raaijmakers, Jos M.; Paulitz, Timothy C.; Steinberg, Christian
- Plant and Soil, Vol. 321, Issue 1-2
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
journal, May 2016
- Afgan, Enis; Baker, Dannon; van den Beek, Marius
- Nucleic Acids Research, Vol. 44, Issue W1
Mixture of Salix Genotypes Promotes Root Colonization With Dark Septate Endophytes and Changes P Cycling in the Mycorrhizosphere
journal, May 2018
- Baum, Christel; Hrynkiewicz, Katarzyna; Szymańska, Sonia
- Frontiers in Microbiology, Vol. 9
Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees
journal, February 2017
- Beckers, Bram; Op De Beeck, Michiel; Weyens, Nele
- Microbiome, Vol. 5, Issue 1
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere: Plant species, soil type and rhizosphere communities
journal, April 2009
- Berg, Gabriele; Smalla, Kornelia
- FEMS Microbiology Ecology, Vol. 68, Issue 1
Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype
journal, March 2019
- Bonito, Gregory; Benucci, Gian Maria Niccolò; Hameed, Khalid
- Frontiers in Microbiology, Vol. 10
Isolating a functionally relevant guild of fungi from the root microbiome of Populus
journal, August 2016
- Bonito, Gregory; Hameed, Khalid; Ventura, Rafael
- Fungal Ecology, Vol. 22
Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants
journal, June 2014
- Bonito, Gregory; Reynolds, Hannah; Robeson, Michael S.
- Molecular Ecology, Vol. 23, Issue 13
Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada
journal, January 2012
- Brockett, Beth F. T.; Prescott, Cindy E.; Grayston, Sue J.
- Soil Biology and Biochemistry, Vol. 44, Issue 1
Factors affecting amino acid uptake by the ectomycorrhizal fungus Paxillus involutus
journal, September 1995
- Chalot, M.; Kytöviita, M. M.; Brun, A.
- Mycological Research, Vol. 99, Issue 9
Manipulating the soil microbiome to increase soil health and plant fertility
journal, May 2012
- Chaparro, Jacqueline M.; Sheflin, Amy M.; Manter, Daniel K.
- Biology and Fertility of Soils, Vol. 48, Issue 5
Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence
journal, August 2017
- Colin, Y.; Nicolitch, O.; Van Nostrand, J. D.
- Scientific Reports, Vol. 7, Issue 1
The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome
journal, February 2018
- Cregger, M. A.; Veach, A. M.; Yang, Z. K.
- Microbiome, Vol. 6, Issue 1
Selective progressive response of soil microbial community to wild oat roots
journal, November 2008
- DeAngelis, Kristen M.; Brodie, Eoin L.; DeSantis, Todd Z.
- The ISME Journal, Vol. 3, Issue 2
Beyond plant defense: insights on the potential of salicylic and methylsalicylic acid to contain growth of the phytopathogen Botrytis cinerea
journal, October 2015
- Dieryckx, Cindy; Gaudin, Vanessa; Dupuy, Jean-William
- Frontiers in Plant Science, Vol. 6
Fungal endophyte infection of ryegrass reprograms host metabolism and alters development
journal, August 2015
- Dupont, Pierre‐Yves; Eaton, Carla J.; Wargent, Jason J.
- New Phytologist, Vol. 208, Issue 4
Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site
journal, April 2017
- Durand, Alexis; Maillard, François; Foulon, Julie
- Microbial Ecology, Vol. 74, Issue 4
Structure, variation, and assembly of the root-associated microbiomes of rice
journal, January 2015
- Edwards, Joseph; Johnson, Cameron; Santos-Medellín, Christian
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 8
Phylogenetic analysis of community assembly and structure over space and time
journal, November 2008
- Emerson, Brent C.; Gillespie, Rosemary G.
- Trends in Ecology & Evolution, Vol. 23, Issue 11
FROGS: Find, Rapidly, OTUs with Galaxy Solution
journal, December 2017
- Escudié, Frédéric; Auer, Lucas; Bernard, Maria
- Bioinformatics, Vol. 34, Issue 8
Understanding and engineering beneficial plant-microbe interactions: plant growth promotion in energy crops
journal, November 2014
- Farrar, Kerrie; Bryant, David; Cope-Selby, Naomi
- Plant Biotechnology Journal, Vol. 12, Issue 9
Embracing the unknown: disentangling the complexities of the soil microbiome
journal, August 2017
- Fierer, Noah
- Nature Reviews Microbiology, Vol. 15, Issue 10
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
journal, February 2017
- Foster, Zachary S. L.; Sharpton, Thomas J.; Grünwald, Niklaus J.
- PLOS Computational Biology, Vol. 13, Issue 2
The mycorrhiza helper bacteria revisited
journal, October 2007
- Frey-Klett, P.; Garbaye, J.; Tarkka, M.
- New Phytologist, Vol. 176, Issue 1
Environmental and genetic effects on the formation of ectomycorrhizal and arbuscular mycorrhizal associations in cottonwoods
journal, April 2006
- Gehring, Catherine A.; Mueller, Rebecca C.; Whitham, Thomas G.
- Oecologia, Vol. 149, Issue 1
Tree genetics defines fungal partner communities that may confer drought tolerance
journal, September 2017
- Gehring, Catherine A.; Sthultz, Christopher M.; Flores-Rentería, Lluvia
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 42
R EGULATION OF A NTIBIOTIC P RODUCTION IN R OOT -C OLONIZING P SEUDOMONAS SPP. AND R ELEVANCE FOR B IOLOGICAL C ONTROL OF P LANT D ISEASE
journal, September 2003
- Haas, Dieter; Keel, Christoph
- Annual Review of Phytopathology, Vol. 41, Issue 1
Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest
journal, October 2018
- Haas, Julia C.; Street, Nathaniel R.; Sjödin, Andreas
- Soil Biology and Biochemistry, Vol. 125
Towards a holistic understanding of the beneficial interactions across the Populus microbiome
journal, November 2014
- Hacquard, Stéphane; Schadt, Christopher W.
- New Phytologist, Vol. 205, Issue 4
The Role of Soil Microorganisms in Plant Mineral Nutrition—Current Knowledge and Future Directions
journal, September 2017
- Jacoby, Richard; Peukert, Manuela; Succurro, Antonella
- Frontiers in Plant Science, Vol. 8
Plant root-microbe communication in shaping root microbiomes
journal, January 2016
- Lareen, Andrew; Burton, Frances; Schäfer, Patrick
- Plant Molecular Biology, Vol. 90, Issue 6
Rapid responses of soil microorganisms improve plant fitness in novel environments
journal, August 2012
- Lau, J. A.; Lennon, J. T.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 35
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
journal, July 2015
- Lebeis, S. L.; Paredes, S. H.; Lundberg, D. S.
- Science, Vol. 349, Issue 6250
Practical innovations for high-throughput amplicon sequencing
journal, September 2013
- Lundberg, Derek S.; Yourstone, Scott; Mieczkowski, Piotr
- Nature Methods, Vol. 10, Issue 10
Whole-genome draft assembly of Populus tremula x P. alba clone INRA 717-1B4
journal, December 2016
- Mader, Malte; Le Paslier, Marie-Christine; Bounon, Rémi
- Silvae Genetica, Vol. 65, Issue 2
Carbohydrate and Amino Acid Metabolism in the Eucalyptus globulus-Pisolithus tinctorius Ectomycorrhiza during Glucose Utilization
journal, October 1998
- Martin, Francis; Boiffin, Vincent; Pfeffer, Philip E.
- Plant Physiology, Vol. 118, Issue 2
Impact of salicylic acid- and jasmonic acid-regulated defences on root colonization by Trichoderma harzianum T-78
journal, August 2017
- Martínez-Medina, Ainhoa; Appels, Freek V. W.; van Wees, Saskia C. M.
- Plant Signaling & Behavior, Vol. 12, Issue 8
Analysis of single root tip microbiomes suggests that distinctive bacterial communities are selected by P inus sylvestris roots colonized by different ectomycorrhizal fungi : Ectomycorrhiza-associated bacterial communities
journal, December 2015
- Marupakula, Srisailam; Mahmood, Shahid; Finlay, Roger D.
- Environmental Microbiology, Vol. 18, Issue 5
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
journal, April 2013
- McMurdie, Paul J.; Holmes, Susan
- PLoS ONE, Vol. 8, Issue 4
Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies
journal, February 2017
- Meena, Kamlesh K.; Sorty, Ajay M.; Bitla, Utkarsh M.
- Frontiers in Plant Science, Vol. 8
Recent Insights on Biological and Ecological Aspects of Ectomycorrhizal Fungi and Their Interactions
journal, February 2018
- Mello, Antonietta; Balestrini, Raffaella
- Frontiers in Microbiology, Vol. 9
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
journal, September 2013
- Mendes, Rodrigo; Garbeva, Paolina; Raaijmakers, Jos M.
- FEMS Microbiology Reviews, Vol. 37, Issue 5
Belowground Microbiota and the Health of Tree Crops
journal, June 2018
- Mercado-Blanco, Jesús; Abrantes, Isabel; Barra Caracciolo, Anna
- Frontiers in Microbiology, Vol. 9
Drought Stress and Root-Associated Bacterial Communities
journal, January 2018
- Naylor, Dan; Coleman-Derr, Devin
- Frontiers in Plant Science, Vol. 8
Mastering ectomycorrhizal symbiosis: the impact of carbohydrates
journal, February 2008
- Nehls, U.
- Journal of Experimental Botany, Vol. 59, Issue 5
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
journal, April 2016
- Nguyen, Nhu H.; Song, Zewei; Bates, Scott T.
- Fungal Ecology, Vol. 20
Attributing functions to ectomycorrhizal fungal identities in assemblages for nitrogen acquisition under stress
journal, September 2013
- Pena, Rodica; Polle, Andrea
- The ISME Journal, Vol. 8, Issue 2
Functional outcomes of fungal community shifts driven by tree genotype and spatial-temporal factors in Mediterranean pine forests
journal, March 2017
- Pérez-Izquierdo, Leticia; Zabal-Aguirre, Mario; Flores-Rentería, Dulce
- Environmental Microbiology, Vol. 19, Issue 4
Impact of plant domestication on rhizosphere microbiome assembly and functions
journal, June 2015
- Pérez-Jaramillo, Juan E.; Mendes, Rodrigo; Raaijmakers, Jos M.
- Plant Molecular Biology, Vol. 90, Issue 6
Soil organisms and global climate change: Soil organisms and global climate change
journal, January 2011
- Pritchard, S. G.
- Plant Pathology, Vol. 60, Issue 1
The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms
journal, February 2008
- Raaijmakers, Jos M.; Paulitz, Timothy C.; Steinberg, Christian
- Plant and Soil, Vol. 321, Issue 1-2
mixOmics: An R package for ‘omics feature selection and multiple data integration
journal, November 2017
- Rohart, Florian; Gautier, Benoît; Singh, Amrit
- PLOS Computational Biology, Vol. 13, Issue 11
A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013
- Shakya, Migun; Gottel, Neil; Castro, Hector
- PLoS ONE, Vol. 8, Issue 10
Decoding the mannitol enigma in filamentous fungi
journal, June 2007
- Solomon, Peter S.; Waters, Ormonde D. C.; Oliver, Richard P.
- Trends in Microbiology, Vol. 15, Issue 6
Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome
journal, January 2018
- Timm, Collin M.; Carter, Kelsey R.; Carrell, Alyssa A.
- mSystems, Vol. 3, Issue 1
Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System
journal, April 2016
- Timm, Collin M.; Pelletier, Dale A.; Jawdy, Sara S.
- Frontiers in Plant Science, Vol. 7
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
journal, September 2006
- Tuskan, G. A.; DiFazio, S.; Jansson, S.
- Science, Vol. 313, Issue 5793, p. 1596-1604
Ecology of the forest microbiome: Highlights of temperate and boreal ecosystems
journal, December 2016
- Uroz, S.; Buée, M.; Deveau, A.
- Soil Biology and Biochemistry, Vol. 103
The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
journal, March 2008
- van der Heijden, Marcel G. A.; Bardgett, Richard D.; van Straalen, Nico M.
- Ecology Letters, Vol. 11, Issue 3
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
journal, May 2019
- Veach, Allison M.; Morris, Reese; Yip, Daniel Z.
- Microbiome, Vol. 7, Issue 1
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
journal, June 2007
- Wang, Q.; Garrity, G. M.; Tiedje, J. M.
- Applied and Environmental Microbiology, Vol. 73, Issue 16