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Title: Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design

Journal Article · · Metabolic Engineering Communications

Not Available

Sponsoring Organization:
USDOE Office of Energy Efficiency and Renewable Energy (EERE), Transportation Office. Bioenergy Technologies Office; USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1639128
Journal Information:
Metabolic Engineering Communications, Journal Name: Metabolic Engineering Communications Journal Issue: C Vol. 11; ISSN 2214-0301
Publisher:
ElsevierCopyright Statement
Country of Publication:
Netherlands
Language:
English

References (46)

Characterization of chromosomal integration sites for heterologous gene expression in Saccharomyces cerevisiae journal October 2009
Plasmid-mediated degradation of 4-chloronitrobenzene by newly isolated Pseudomonas putida strain ZWL73 journal April 2006
Industrial biotechnology of Pseudomonas putida and related species journal February 2012
The catabolism of 2,4-xylenol and p-cresol share the enzymes for the oxidation of para-methyl group in Pseudomonas putida NCIMB 9866 journal June 2013
Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria journal November 1990
Selection of independent plasmids determining phenol degradation inPseudomonas putida and the cloning and expression of genes encoding phenol monooxygenase and catechol 1,2-dioxygenase journal July 1990
The T7 phage gene 10 leader RNA, a ribosome-binding site that dramatically enhances the expression of foreign genes in Escherichia coli journal December 1988
Toluene Degradation by Pseudomonas putida F1 journal September 1989
The Mechanism of Formation of β-Ketoadipic acid by Bacteria journal October 1954
The Conversion of Catechol and Protocatechuate to β-Ketoadipate by Pseudomonas putida journal August 1966
Enhancing muconic acid production from glucose and lignin-derived aromatic compounds via increased protocatechuate decarboxylase activity journal December 2016
Development of a high efficiency integration system and promoter library for rapid modification of Pseudomonas putida KT2440 journal December 2017
Hard-Wired Control of Bacterial Processes by Chromosomal Gene Location journal October 2016
Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin journal March 2015
Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli journal April 2016
Effect of Genome Position on Heterologous Gene Expression in Bacillus subtilis : An Unbiased Analysis journal May 2016
Short Synthetic Terminators for Improved Heterologous Gene Expression in Yeast journal February 2015
Industrial biocatalysis today and tomorrow journal January 2001
Stabilized gene duplication enables long-term selection-free heterologous pathway expression journal July 2009
Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes journal March 2008
Pseudomonas putida rDNA is a favored site for the expression of biosynthetic genes journal May 2019
Thermochemical wastewater valorization via enhanced microbial toxicity tolerance journal January 2018
Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: The phenylacetyl-CoA catabolon journal May 1998
Pseudomonas putida KT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways journal September 2015
CONSeQuence: Prediction of Reference Peptides for Absolute Quantitative Proteomics Using Consensus Machine Learning Approaches journal August 2011
Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments journal June 2015
The BioCyc collection of microbial genomes and metabolic pathways journal August 2017
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments journal February 2010
Chromosome position effects on gene expression in Escherichia coli K-12 journal September 2014
Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes journal January 2016
Modulation of gene expression through chromosomal positioning in Escherichia coli journal June 1997
Pseudomonas putida KT2440 is naturally endowed to withstand industrial‐scale stress conditions journal April 2020
High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome journal October 2013
New Constitutive Vectors: Useful Genetic Engineering Tools for Biocatalysis journal February 2013
Inducible Amplification of Gene Copy Number and Heterologous Protein Production in the Yeast Kluyveromyces lactis journal November 1999
Location Effects of a Reporter Gene on Expression Levels and on Native Protein Synthesis in Lactococcus lactis and Saccharomyces cerevisiae journal August 2001
The Homogentisate Pathway: a Central Catabolic Pathway Involved in the Degradation of L-Phenylalanine, L-Tyrosine, and 3-Hydroxyphenylacetate in Pseudomonas putida journal July 2004
Transmissible Plasmid Coding Early Enzymes of Naphthalene Oxidation in Pseudomonas putida journal January 1973
Repression of 4-hydroxybenzoate transport and degradation by benzoate: a new layer of regulatory control in the Pseudomonas putida beta-ketoadipate pathway. journal January 1995
Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus. journal January 1996
mucK, a gene in Acinetobacter calcoaceticus ADP1 (BD413), encodes the ability to grow on exogenous cis,cis-muconate as the sole carbon source. journal September 1997
The β-Ketoadipate Pathway And The Biology Of Self-Identity journal October 1996
Development of a broad-host-range sacB-based vector for unmarked allelic exchange journal January 2008
Region specificity of chromosome III on gene expression in the yeast Saccharomyces cerevisiae. journal January 1998
Impact of Chromosomal Architecture on the Function and Evolution of Bacterial Genomes journal August 2018
A New Suite of Plasmid Vectors for Fluorescence-Based Imaging of Root Colonizing Pseudomonads journal February 2018

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