Mechanistic basis of vitamin B12 and cobinamide salvaging by the Vibrio species

Agarwal, Shubhangi; Dey, Sanjay; Ghosh, Biplab; Biswas, Maitree; Dasgupta, Jhimli

doi:10.1016/j.bbapap.2018.11.004

Title: Mechanistic basis of vitamin B12 and cobinamide salvaging by the Vibrio species

Journal Article · 01 February 2019 · Biochimica et Biophysica Acta. Proteins and Proteomics

DOI: https://doi.org/10.1016/j.bbapap.2018.11.004 · OSTI ID:1637114

Agarwal, Shubhangi; Dey, Sanjay; Ghosh, Biplab; Biswas, Maitree; Dasgupta, Jhimli

Not Available

View Accepted Manuscript (Publisher)

Cite

Export

Save

Sponsoring Organization:: USDOE Office of Science (SC), Nuclear Physics (NP)

OSTI ID:: 1637114

Journal Information:: Biochimica et Biophysica Acta. Proteins and Proteomics, Journal Name: Biochimica et Biophysica Acta. Proteins and Proteomics Journal Issue: 2 Vol. 1867; ISSN 1570-9639

Publisher:: ElsevierCopyright Statement

Country of Publication:: France

Language:: English

References (39)

Vitamin B12: How the Problem of Its Biosynthesis Was Solved Blanche, Francis; Cameron, Beatrice; Crouzet, Joel Angewandte Chemie International Edition in English, Vol. 34, Issue 4 https://doi.org/10.1002/anie.199503831	journal	March 1995
Biosynthesis of cobalamin (vitamin B12): a bacterial conundrum Raux, E.; Schubert, H. L.; Warren*, M. J. Cellular and Molecular Life Sciences, Vol. 57, Issue 13 https://doi.org/10.1007/PL00000670	journal	December 2000
Microbial production of vitamin B 12 Martens, H. Barg, M. Warren, D. Jah, J. -H. Applied Microbiology and Biotechnology, Vol. 58, Issue 3 https://doi.org/10.1007/s00253-001-0902-7	journal	March 2002
Study on the mechanism of the BtuF periplasmic-binding protein for vitamin B12 Liu, Ming; Sun, TingGuang; Hu, JianPing Biophysical Chemistry, Vol. 135, Issue 1-3 https://doi.org/10.1016/j.bpc.2008.02.017	journal	June 2008
Protein production by auto-induction in high-density shaking cultures Studier, F. William Protein Expression and Purification, Vol. 41, Issue 1, p. 207-234 https://doi.org/10.1016/j.pep.2005.01.016	journal	May 2005
Radical Peregrinations Catalyzed by Coenzyme B ₁₂ -Dependent Enzymes ^† Banerjee, Ruma Biochemistry, Vol. 40, Issue 21 https://doi.org/10.1021/bi0104423	journal	May 2001
Spectroscopic Studies of DNA and ATP Binding to Human Polynucleotide Kinase: Evidence for a Ternary Complex ^† Mani, Rajam S.; Karimi-Busheri, Feridoun; Fanta, Mesfin Biochemistry, Vol. 42, Issue 41 https://doi.org/10.1021/bi030127b	journal	October 2003
Characterization of the Periplasmic Heme-Binding Protein ShuT from the Heme Uptake System of Shigella dysenteriae Eakanunkul, Suntara; Lukat-Rodgers, Gudrun S.; Sumithran, Suganya Biochemistry, Vol. 44, Issue 39 https://doi.org/10.1021/bi050422r	journal	September 2005
Structure of AMP-PNP-bound vitamin B12 transporter BtuCD–F Korkhov, Vladimir M.; Mireku, Samantha A.; Locher, Kaspar P. Nature, Vol. 490, Issue 7420 https://doi.org/10.1038/nature11442	journal	September 2012
X-ray structure of the Yersinia pestis heme transporter HmuUV Woo, Jae-Sung; Zeltina, Antra; Goetz, Birke A. Nature Structural & Molecular Biology, Vol. 19, Issue 12 https://doi.org/10.1038/nsmb.2417	journal	November 2012
Mechanistic diversity in ATP-binding cassette (ABC) transporters Locher, Kaspar P. Nature Structural & Molecular Biology, Vol. 23, Issue 6 https://doi.org/10.1038/nsmb.3216	journal	June 2016
Conformational Change of a Tryptophan Residue in BtuF Facilitates Binding and Transport of Cobinamide by the Vitamin B12 Transporter BtuCD-F Mireku, S. A.; Ruetz, M.; Zhou, T. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/srep41575	journal	January 2017
Structure and dynamics of Type III periplasmic proteins VcFhuD and VcHutB reveal molecular basis of their distinctive ligand binding properties Agarwal, Shubhangi; Dey, Sanjay; Ghosh, Biplab Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/srep42812	journal	February 2017
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri -- substitution of the corrinoid harbouring subunit MtaC by free cob(I)alamin : Substitution of Sauer, Karin; Thauer, Rudolf K. European Journal of Biochemistry, Vol. 261, Issue 3 https://doi.org/10.1046/j.1432-1327.1999.00355.x	journal	May 1999
Canonical sampling through velocity rescaling Bussi, Giovanni; Donadio, Davide; Parrinello, Michele The Journal of Chemical Physics, Vol. 126, Issue 1 https://doi.org/10.1063/1.2408420	journal	January 2007
Polymorphic transitions in single crystals: A new molecular dynamics method Parrinello, M.; Rahman, A. Journal of Applied Physics, Vol. 52, Issue 12 https://doi.org/10.1063/1.328693	journal	December 1981
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems Darden, Tom; York, Darrin; Pedersen, Lee The Journal of Chemical Physics, Vol. 98, Issue 12 https://doi.org/10.1063/1.464397	journal	June 1993
Bacteria in an intense competition for iron: Key component of the Campylobacter jejuni iron uptake system scavenges enterobactin hydrolysis product Raines, Daniel J.; Moroz, Olga V.; Blagova, Elena V. Proceedings of the National Academy of Sciences, Vol. 113, Issue 21 https://doi.org/10.1073/pnas.1520829113	journal	May 2016
The structure of Escherichia coli BtuF and binding to its cognate ATP binding cassette transporter Borths, E. L.; Locher, K. P.; Lee, A. T. Proceedings of the National Academy of Sciences, Vol. 99, Issue 26 https://doi.org/10.1073/pnas.262659699	journal	December 2002
B12-dependent ribonucleotide reductases from deeply rooted eubacteria are structurally related to the aerobic enzyme from Escherichia coli Jordan, A.; Torrents, E.; Jeanthon, C. Proceedings of the National Academy of Sciences, Vol. 94, Issue 25 https://doi.org/10.1073/pnas.94.25.13487	journal	December 1997
X-ray Crystallographic Structures of the Escherichia coli Periplasmic Protein FhuD Bound to Hydroxamate-type Siderophores and the Antibiotic Albomycin Clarke, Teresa E.; Braun, Volkmar; Winkelmann, Günther Journal of Biological Chemistry, Vol. 277, Issue 16 https://doi.org/10.1074/jbc.M109385200	journal	April 2002
Crystal Structures of the BtuF Periplasmic-binding Protein for Vitamin B12 Suggest a Functionally Important Reduction in Protein Mobility upon Ligand Binding Karpowich, Nathan K.; Huang, Hector H.; Smith, Paul C. Journal of Biological Chemistry, Vol. 278, Issue 10 https://doi.org/10.1074/jbc.M212239200	journal	December 2002
MUSCLE: multiple sequence alignment with high accuracy and high throughput Edgar, R. C. Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797 https://doi.org/10.1093/nar/gkh340	journal	March 2004
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007
Coot model-building tools for molecular graphics Emsley, Paul; Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132 https://doi.org/10.1107/S0907444904019158	journal	November 2004
XDS Kabsch, Wolfgang Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2 https://doi.org/10.1107/S0907444909047337	journal	January 2010
PHENIX: a comprehensive Python-based system for macromolecular structure solution Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221 https://doi.org/10.1107/S0907444909052925	journal	January 2010
Overview of the CCP 4 suite and current developments Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D. Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444910045749	journal	March 2011
Protein crystallography beamline (PX-BL21) at Indus-2 synchrotron Kumar, Ashwani; Ghosh, Biplab; Poswal, H. K. Journal of Synchrotron Radiation, Vol. 23, Issue 2 https://doi.org/10.1107/S160057751600076X	journal	February 2016
Purification, crystallization and preliminary X-ray analysis of the periplasmic haem-binding protein HutB from Vibrio cholerae Agarwal, Shubhangi; Biswas, Maitree; Dasgupta, Jhimli Acta Crystallographica Section F Structural Biology Communications, Vol. 71, Issue 4 https://doi.org/10.1107/S2053230X15003660	journal	March 2015
Biochemistry of coenzyme B₁₂-dependent glycerol and diol dehydratases and organization of the encoding genes Daniel, Rolf; Bobik, Thomas A.; Gottschalk, Gerhard FEMS Microbiology Reviews, Vol. 22, Issue 5, p. 553-566 https://doi.org/10.1111/j.1574-6976.1998.tb00387.x	journal	December 1998
Thermotoga lettingae Can Salvage Cobinamide To Synthesize Vitamin B ₁₂ Butzin, Nicholas C.; Secinaro, Michael A.; Swithers, Kristen S. Applied and Environmental Microbiology, Vol. 79, Issue 22 https://doi.org/10.1128/AEM.01800-13	journal	September 2013
Conversion of Cobinamide into Adenosylcobamide in Bacteria and Archaea Escalante-Semerena, J. C. Journal of Bacteriology, Vol. 189, Issue 13 https://doi.org/10.1128/JB.00503-07	journal	May 2007
Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. Roth, J. R.; Lawrence, J. G.; Rubenfield, M. Journal of Bacteriology, Vol. 175, Issue 11 https://doi.org/10.1128/JB.175.11.3303-3316.1993	journal	June 1993
Identification of the Periplasmic Cobalamin-Binding Protein BtuF of Escherichia coli Cadieux, Nathalie; Bradbeer, Clive; Reeger-Schneider, Eva Journal of Bacteriology, Vol. 184, Issue 3 https://doi.org/10.1128/JB.184.3.706-717.2002	journal	February 2002
ABC Transporter for Corrinoids in Halobacterium sp. Strain NRC-1 Woodson, Jesse D.; Reynolds, April A.; Escalante-Semerena, Jorge C. Journal of Bacteriology, Vol. 187, Issue 17 https://doi.org/10.1128/JB.187.17.5901-5909.2005	journal	September 2005
ATP-Binding Cassette Transporters in Bacteria Davidson, Amy L.; Chen, Jue Annual Review of Biochemistry, Vol. 73, Issue 1 https://doi.org/10.1146/annurev.biochem.73.011303.073626	journal	June 2004
Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization Zhang, Yan; Rodionov, Dmitry A.; Gelfand, Mikhail S. BMC Genomics, Vol. 10, Issue 1 https://doi.org/10.1186/1471-2164-10-78	journal	January 2009
Microbial production of vitamin B12: a review and future perspectives Fang, Huan; Kang, Jie; Zhang, Dawei Microbial Cell Factories, Vol. 16, Issue 1 https://doi.org/10.1186/s12934-017-0631-y	journal	January 2017

Similar Records

Vitamin B12 Synthesis and Salvage Pathways Were Acquired by Horizontal Gene Transfer to the Thermotogales

Journal Article · 2012 · Genome Biology and Evolution · OSTI ID:1625328

Swithers, Kristen S.; Petrus, Amanda K.; Secinaro, Michael A.; +4 more

The structural basis for molecular recognition by the vitamin B12 RNA aptamer

Journal Article · 2000 · Nature Structural Biology · OSTI ID:800336

Sussman, Django R; Nix, J; Wilson, Charles

Stability of Injected Vitamin B12-Co60 and Vitamin B12 Content of Dog Liver

Journal Article · 1960 · Experimental Biology and Medicine · OSTI ID:4807701

Rosenblum, C.; Willigan, D. A.; Meriwether, H. T.; +1 more

Title: Mechanistic basis of vitamin B12 and cobinamide salvaging by the Vibrio species

Citation Formats

References (39)

Similar Records

Related Subjects