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Title: Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides

Abstract

ABSTRACT Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.

Authors:
ORCiD logo; ; ; ;
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1635570
Alternate Identifier(s):
OSTI ID: 1649135
Grant/Contract Number:  
AC05-00OR22725
Resource Type:
Published Article
Journal Name:
Microbiology Resource Announcements
Additional Journal Information:
Journal Name: Microbiology Resource Announcements Journal Volume: 9 Journal Issue: 27; Journal ID: ISSN 2576-098X
Publisher:
SSPA - American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Podar, Mircea, Turner, Joel, Burdick, Leah H., Pelletier, Dale A., and Thrash, ed., J. Cameron. Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides. United States: N. p., 2020. Web. https://doi.org/10.1128/MRA.00644-20.
Podar, Mircea, Turner, Joel, Burdick, Leah H., Pelletier, Dale A., & Thrash, ed., J. Cameron. Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides. United States. https://doi.org/10.1128/MRA.00644-20
Podar, Mircea, Turner, Joel, Burdick, Leah H., Pelletier, Dale A., and Thrash, ed., J. Cameron. Thu . "Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides". United States. https://doi.org/10.1128/MRA.00644-20.
@article{osti_1635570,
title = {Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides},
author = {Podar, Mircea and Turner, Joel and Burdick, Leah H. and Pelletier, Dale A. and Thrash, ed., J. Cameron},
abstractNote = {ABSTRACT Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.},
doi = {10.1128/MRA.00644-20},
journal = {Microbiology Resource Announcements},
number = 27,
volume = 9,
place = {United States},
year = {2020},
month = {7}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/MRA.00644-20

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Works referenced in this record:

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
journal, November 2018


Metabolic adaptation and trophic strategies of soil bacteria—C1- metabolism and sulfur chemolithotrophy in Starkeya novella
journal, January 2013


Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria.
journal, September 2000

  • Kelly, D. P.; McDonald, I. R.; Wood, A. P.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 50, Issue 5
  • DOI: 10.1099/00207713-50-5-1797

Prokka: rapid prokaryotic genome annotation
journal, March 2014


Thiobacillus Novellus
journal, January 1959


Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere
journal, November 2019

  • Podar, Mircea; Turner, Joel; Burdick, Leah H.
  • Microbiology Resource Announcements, Vol. 8, Issue 46
  • DOI: 10.1128/MRA.01065-19

Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes
journal, February 2008

  • Frank, J. A.; Reich, C. I.; Sharma, S.
  • Applied and Environmental Microbiology, Vol. 74, Issue 8
  • DOI: 10.1128/AEM.02272-07

KBase: The United States Department of Energy Systems Biology Knowledgebase
journal, July 2018

  • Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S.
  • Nature Biotechnology, Vol. 36, Issue 7
  • DOI: 10.1038/nbt.4163

CO 2 fixation by the facultative autotroph Thiobacillus novellus during autotrophy–heterotrophy interconversions
journal, November 1974

  • McCarthy, J. T.; Charles, A. Michael
  • Canadian Journal of Microbiology, Vol. 20, Issue 11
  • DOI: 10.1139/m74-244

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010


Isolation of some Bacteria Which Oxidize Thiosulfate
journal, January 1935


Clustal W and Clustal X version 2.0
journal, September 2007


NCBI prokaryotic genome annotation pipeline
journal, June 2016

  • Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat
  • Nucleic Acids Research, Vol. 44, Issue 14
  • DOI: 10.1093/nar/gkw569

Database indexing for production MegaBLAST searches
journal, June 2008


Carbon dioxide assimilation by Thiobacillus novellus under nutrient-limited mixotrophic conditions.
journal, January 1982


Starkeya koreensis sp. nov., isolated from rice straw
journal, October 2006

  • Im, Wan-Taek; Aslam, Zubair; Lee, Myungjin
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 56, Issue 10
  • DOI: 10.1099/ijs.0.64093-0

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)
journal, September 2012

  • Kappler, Ulrike; Davenport, Karen; Beatson, Scott
  • Standards in Genomic Sciences, Vol. 7, Issue 1
  • DOI: 10.4056/sogs.3006378

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
journal, July 2016

  • Utturkar, Sagar M.; Cude, W. Nathan; Robeson, Michael S.
  • Applied and Environmental Microbiology, Vol. 82, Issue 18
  • DOI: 10.1128/AEM.01285-16

Oxalate, formate, formamide, and methanol metabolism in Thiobacillus novellus.
journal, January 1977


Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellus )
journal, March 2001

  • Kappler, Ulrike; Friedrich, Cornelius G.; Trüper, Hans G.
  • Archives of Microbiology, Vol. 175, Issue 2
  • DOI: 10.1007/s002030000241