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August 2013 |
Sox proteins: regulators of cell fate specification and differentiation
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October 2013 |
CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells
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December 2014 |
Chromosome territories – a functional nuclear landscape
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June 2006 |
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
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May 2018 |
CTCF Binding Polarity Determines Chromatin Looping
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November 2015 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
High-Resolution Mapping and Characterization of Open Chromatin across the Genome
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January 2008 |
4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells
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journal
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January 2014 |
Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos
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July 2014 |
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
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May 2017 |
Fast and accurate short read alignment with Burrows-Wheeler transform
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May 2009 |
Live-Cell Chromosome Dynamics and Outcome of X Chromosome Pairing Events during ES Cell Differentiation
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April 2011 |
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
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April 2013 |
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
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April 2013 |
Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation
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December 2013 |
An Efficient and Reversible Transposable System for Gene Delivery and Lineage-Specific Differentiation in Human Embryonic Stem Cells
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November 2009 |
Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
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April 2016 |
Histone H3K27ac separates active from poised enhancers and predicts developmental state
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November 2010 |
The long-range interaction landscape of gene promoters
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September 2012 |
The Sox Family of Transcription Factors: Versatile Regulators of Stem and Progenitor Cell Fate
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January 2013 |
Transcriptional Pulsing of a Developmental Gene
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May 2006 |
Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
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June 2008 |
YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
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May 2017 |
A transgenic mouse for in vivo detection of endogenous labeled mRNA
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January 2011 |
NIH Image to ImageJ: 25 years of image analysis
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June 2012 |
Computer Control of Microscopes Using µManager
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October 2010 |
A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genes
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July 1983 |
Genome-wide identification of enhancers in skeletal muscle: the role of MyoD1
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December 2012 |
Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations
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November 2013 |
A Phase Separation Model for Transcriptional Control
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March 2017 |
Reactivation of Developmentally Silenced Globin Genes by Forced Chromatin Looping
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August 2014 |
In vivo visualization of chromosomes using lac operator-repressor binding
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March 1998 |
Identification of Sox-2 regulatory region which is under the control of Oct-3/4-Sox-2 complex
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July 2002 |
An integrated encyclopedia of DNA elements in the human genome
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September 2012 |
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
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October 2009 |
The Human Genome Browser at UCSC
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May 2002 |
Enhancers: The abundance and function of regulatory sequences beyond promoters
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March 2010 |
Enhancer Control of Transcriptional Bursting
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July 2016 |
Histone H2B.8 compacts flowering plant sperm through chromatin phase separation
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November 2022 |
Coactivator condensation at super-enhancers links phase separation and gene control
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June 2018 |
The Spatial Organization of the Human Genome
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August 2013 |
Transcriptional Pulsing of a Developmental Gene
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May 2006 |
Regulation of disease-associated gene expression in the 3D genome
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November 2016 |
Dynamic Control of Enhancer Repertoires Drives Lineage and Stage-Specific Transcription during Hematopoiesis
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January 2016 |
Spatial partitioning of the regulatory landscape of the X-inactivation centre
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journal
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April 2012 |
HiChIP: efficient and sensitive analysis of protein-directed genome architecture
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journal
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September 2016 |
Chromosome territories – a functional nuclear landscape
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journal
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June 2006 |
High-Resolution Mapping and Characterization of Open Chromatin across the Genome
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journal
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January 2008 |
Live-Cell Visualization of Pre-mRNA Splicing with Single-Molecule Sensitivity
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September 2013 |
A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential
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December 2014 |
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
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November 2016 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
Spatial Dynamics of Chromosome Translocations in Living Cells
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August 2013 |
Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues
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January 2013 |
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
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journal
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May 2017 |
Genome-wide identification of enhancers in skeletal muscle: the role of MyoD1
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December 2012 |
A guide to membraneless organelles and their various roles in gene regulation
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November 2022 |
Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom
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January 2016 |
A high-resolution map of the three-dimensional chromatin interactome in human cells
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October 2013 |
Cohesins: Chromosomal Proteins that Prevent Premature Separation of Sister Chromatids
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October 1997 |
Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage
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September 2012 |
Robust 4C-seq data analysis to screen for regulatory DNA interactions
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September 2012 |
The accessible chromatin landscape of the human genome
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September 2012 |
Targeted A-to-G base editing of chloroplast DNA in plants
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December 2022 |
4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells
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January 2014 |
A general method to improve fluorophores for live-cell and single-molecule microscopy
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January 2015 |
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
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July 2015 |
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
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October 2014 |
Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression
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October 2014 |
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
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June 2013 |
A Phase Separation Model for Transcriptional Control
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March 2017 |
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- Libraries, The University of North Carolina at Chapel Hill University
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The University of North Carolina at Chapel Hill University Libraries
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Drilling accurate nanopores for biosensors by energetic multi-wall carbon nanotubes: a molecular dynamics investigation
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September 2022 |
Enhancer Control of Transcriptional Bursting
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July 2016 |
Sixteen additional enhancers associated with the chicken Sox2 locus outside the central 50-kb region
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journal
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November 2014 |
Computer Control of Microscopes Using µManager
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journal
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October 2010 |
CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
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journal
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February 2015 |
Identification of Sox-2 regulatory region which is under the control of Oct-3/4-Sox-2 complex
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journal
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July 2002 |
Coactivator condensation at super-enhancers links phase separation and gene control
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journal
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June 2018 |
Transcriptional Regulatory Networks in Embryonic Stem Cells
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January 2008 |
Mapping the 3D genome: Aiming for consilience
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November 2016 |
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
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August 2015 |
Topological domains in mammalian genomes identified by analysis of chromatin interactions
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journal
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April 2012 |
Visualization of Transvection in Living Drosophila Embryos
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journal
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April 2018 |
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
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December 2014 |
Tracing DNA paths and RNA profiles in cultured cells and tissues with ORCA
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February 2021 |
YY1 Is a Structural Regulator of Enhancer-Promoter Loops
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December 2017 |
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
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February 2012 |
Control of cell fate and differentiation by Sry-related high-mobility-group box (Sox) transcription factors
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January 2007 |
3D Trajectories Adopted by Coding and Regulatory DNA Elements: First-Passage Times for Genomic Interactions
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July 2014 |
A unique chromatin signature uncovers early developmental enhancers in humans
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December 2010 |
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
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November 2016 |
Sox2 roles in neural stem cells
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March 2010 |
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
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July 2016 |
Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System
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January 2014 |
A latent subset of human hematopoietic stem cells resists regenerative stress to preserve stemness
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May 2021 |
In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition
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Localization of ASH1 mRNA Particles in Living Yeast
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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The Spatial Organization of the Human Genome
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Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
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May 2015 |
Variability and memory of protein levels in human cells
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November 2006 |
Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage
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September 2012 |
A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
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April 2014 |
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
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February 2007 |
Regulation of disease-associated gene expression in the 3D genome
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November 2016 |
A high-resolution map of the three-dimensional chromatin interactome in human cells
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October 2013 |
Optimal Spatial Adaptation for Patch-Based Image Denoising
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October 2006 |
Control of cell fate and differentiation by Sry-related high-mobility-group box (Sox) transcription factors
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Cellulyzer - Automated analysis and interactive visualization/simulation of select cellular processes
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Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
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June 2018 |
Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement
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October 2017 |
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
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June 2013 |
Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
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January 2018 |
The dark side of SOX2: cancer - a comprehensive overview
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March 2017 |
Histone modifications at human enhancers reflect global cell-type-specific gene expression
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March 2009 |
An Efficient and Reversible Transposable System for Gene Delivery and Lineage-Specific Differentiation in Human Embryonic Stem Cells
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September 2009 |
Dynamic interplay between enhancer–promoter topology and gene activity
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journal
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July 2018 |
YY1 Is a Structural Regulator of Enhancer-Promoter Loops
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journal
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December 2017 |
A unique chromatin signature uncovers early developmental enhancers in humans
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December 2010 |
Functional Analysis of Chicken Sox2 Enhancers Highlights an Array of Diverse Regulatory Elements that Are Conserved in Mammals
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April 2003 |
High-Efficiency FLP and ΦC31 Site-Specific Recombination in Mammalian Cells
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January 2007 |
Fiji: an open-source platform for biological-image analysis
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June 2012 |
Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
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June 2012 |
Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping
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July 2017 |
Multiscale 3D Genome Rewiring during Mouse Neural Development
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October 2017 |
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
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May 2015 |
Reorganization of Enhancer Patterns in Transition from Naive to Primed Pluripotency
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June 2014 |
Cohesin Loss Eliminates All Loop Domains
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October 2017 |
Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System
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December 2013 |
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
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journal
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August 2015 |
The architecture of gene expression: integrating dispersed cis-regulatory modules into coherent regulatory domains
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August 2014 |
Stochastic promoter activation affects Nanog expression variability in mouse embryonic stem cells
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November 2014 |
Control of the Embryonic Stem Cell State
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March 2011 |
Accuracy and efficiency define Bxb1 integrase as the best of fifteen candidate serine recombinases for the integration of DNA into the human genome
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January 2013 |
Closing the loop: 3C versus DNA FISH
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October 2016 |
Site-Specific Genomic Integration in Mammalian Cells Mediated by Phage φC31 Integrase
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June 2001 |
The 3D Genome as Moderator of Chromosomal Communication
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March 2016 |
FISH-ing for captured contacts: towards reconciling FISH and 3C
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June 2017 |
Sox2 roles in neural stem cells
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March 2010 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
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November 2014 |
Enhancer RNAs: A Class of Long Noncoding RNAs Synthesized at Enhancers: Figure 1.
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January 2015 |
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
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July 2014 |
Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations
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journal
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November 2013 |
Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System
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journal
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January 2014 |
Live-Cell Imaging Reveals Enhancer-dependent Sox2 Transcription in the Absence of Enhancer Proximity
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image
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January 2019 |
Sox proteins: regulators of cell fate specification and differentiation
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journal
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October 2013 |
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
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journal
|
April 2013 |
Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos
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journal
|
July 2014 |
Sox2 regulatory sequences direct expression of a β-geo transgene to telencephalic neural stem cells and precursors of the mouse embryo, revealing regionalization of gene expression in CNS stem cells
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journal
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June 2000 |
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
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journal
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April 2013 |
Quantification of mRNA translation in live cells using single-molecule imaging
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journal
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February 2020 |
In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition
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journal
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December 1996 |
The long-range interaction landscape of gene promoters
|
journal
|
September 2012 |
CTCF Binding Polarity Determines Chromatin Looping
|
journal
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November 2015 |
Closing the loop: 3C versus DNA FISH
|
journal
|
October 2016 |
A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
|
journal
|
April 2014 |
A transgenic mouse for in vivo detection of endogenous labeled mRNA
|
journal
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January 2011 |
Transcriptional Regulatory Networks in Embryonic Stem Cells
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journal
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January 2008 |
Visualization of Transvection in Living Drosophila Embryos
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journal
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April 2018 |
Fast live simultaneous multiwavelength four-dimensional optical microscopy
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journal
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August 2010 |
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
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journal
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February 2012 |
SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation
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journal
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July 2020 |
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
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journal
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October 2013 |
Live-Cell Chromosome Dynamics and Outcome of X Chromosome Pairing Events during ES Cell Differentiation
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journal
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April 2011 |
Interphase chromosomes undergo constrained diffusional motion in living cells
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journal
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December 1997 |
An Efficient and Reversible Transposable System for Gene Delivery and Lineage-Specific Differentiation in Human Embryonic Stem Cells
|
journal
|
November 2009 |
Topological domains in mammalian genomes identified by analysis of chromatin interactions
|
journal
|
April 2012 |
CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells
|
journal
|
December 2014 |
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
|
journal
|
July 2016 |
Dynamic interplay between enhancer–promoter topology and gene activity
|
journal
|
July 2018 |
Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
|
journal
|
January 2018 |
The 3D Genome as Moderator of Chromosomal Communication
|
journal
|
March 2016 |
Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression
|
journal
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October 2014 |
TrackMate: An open and extensible platform for single-particle tracking
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journal
|
February 2017 |
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
|
journal
|
October 2014 |
Spatial partitioning of the regulatory landscape of the X-inactivation centre
|
journal
|
April 2012 |
Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
|
journal
|
January 2012 |
Sixteen additional enhancers associated with the chicken Sox2 locus outside the central 50-kb region
|
journal
|
November 2014 |
The dark side of SOX2: cancer - a comprehensive overview
|
journal
|
March 2017 |
The architecture of gene expression: integrating dispersed cis-regulatory modules into coherent regulatory domains
|
journal
|
August 2014 |
A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genes
|
journal
|
July 1983 |
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
|
journal
|
July 2018 |
The Human Genome Browser at UCSC
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journal
|
May 2002 |
Reactivation of Developmentally Silenced Globin Genes by Forced Chromatin Looping
|
journal
|
August 2014 |
HiChIP: efficient and sensitive analysis of protein-directed genome architecture
|
journal
|
September 2016 |
Fast gapped-read alignment with Bowtie 2
|
journal
|
March 2012 |
The Sox Family of Transcription Factors: Versatile Regulators of Stem and Progenitor Cell Fate
|
journal
|
January 2013 |
Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens
|
journal
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March 2021 |
Enhancers: The abundance and function of regulatory sequences beyond promoters
|
journal
|
April 2010 |
Enhancers: The abundance and function of regulatory sequences beyond promoters
|
journal
|
April 2010 |
Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
|
journal
|
June 2008 |
Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping
|
journal
|
July 2017 |
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
|
journal
|
February 2007 |
SOX2 and cancer: current research and its implications in the clinic
|
journal
|
July 2014 |
CTCF and cohesin regulate chromatin loop stability with distinct dynamics
|
journal
|
May 2017 |
High-Efficiency FLP and ΦC31 Site-Specific Recombination in Mammalian Cells
|
journal
|
January 2007 |
An integrated encyclopedia of DNA elements in the human genome
|
journal
|
September 2012 |
scVAEBGM: Clustering Analysis of Single-Cell ATAC-seq Data Using a Deep Generative Model
|
journal
|
August 2022 |
Sox2 regulatory sequences direct expression of a β-geo transgene to telencephalic neural stem cells and precursors of the mouse embryo, revealing regionalization of gene expression in CNS stem cells
|
journal
|
June 2000 |