COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database

Journal Article · 18 June 2020 · Microbiology Resource Announcements

DOI: https://doi.org/10.1128/MRA.00587-20 · OSTI ID:1633687

Myers, Kevin S.  ^[1]; Place, Michael ^[1]; Noguera, Daniel R.  ^[2]; Donohue, Timothy J.  ^[3]; Putonti, ed., Catherine

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1. Wisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin—Madison, Madison, Wisconsin, USA
2. Wisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin—Madison, Madison, Wisconsin, USA, Department of Civil &, Environmental Engineering, University of Wisconsin—Madison, Madison, Wisconsin, USA
3. Wisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin—Madison, Madison, Wisconsin, USA, Department of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA

We introduce COnTORT ( CO mprehensive T ranscriptomic OR ganizational T ool), a publicly available program that retrieves all available gene expression data and associated metadata for an organism from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database. The data are compiled into text files that can be used for downstream bioinformatic applications.

• Sponsoring Organization: USDOE
• Grant/Contract Number: SC0018409
• OSTI ID: 1633687
• Journal Information: Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 25 Vol. 9; ISSN 2576-098X
• Publisher: American Society for MicrobiologyCopyright Statement
• Country of Publication: United States
• Language: English