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Title: Interfacial molecular interactions of cellobiohydrolase Cel7A and its variants on cellulose

Journal Article · · Biotechnology for Biofuels
ORCiD logo [1]; ORCiD logo [2];  [3];  [4];  [1];  [5]; ORCiD logo [1]
  1. Univ. of California, Davis, CA (United States)
  2. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  3. Gracenote, Inc., Emoryville, CA (United States)
  4. Univ. of California, Davis, CA (United States); Silpakorn Univ., Nakhon Pathom (Thailand)
  5. Univ. of California, Davis, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Molecular-scale mechanisms of the enzymatic breakdown of cellulosic biomass into fermentable sugars are still poorly understood, with a need for independent measurements of enzyme kinetic parameters. We measured binding times of cellobiohydrolase Trichoderma reesei Cel7A (Cel7A) on celluloses using wild-type Cel7A (WTintact), the catalytically deficient mutant Cel7A E212Q (E212Qintact) and their proteolytically isolated catalytic domains (CD) (WTcore and E212Qcore, respectively). The binding time distributions were obtained from time-resolved, super-resolution images of fluorescently labeled enzymes on cellulose obtained with total internal reflection fluorescence microscopy.

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE Office of Science (SC). Basic Energy Sciences (BES) (SC-22)
Grant/Contract Number:
89233218CNA000001
OSTI ID:
1630858
Report Number(s):
LA-UR--19-28848
Journal Information:
Biotechnology for Biofuels, Journal Name: Biotechnology for Biofuels Journal Issue: 1 Vol. 13; ISSN 1754-6834
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

References (82)

The productive cellulase binding capacity of cellulosic substrates: Productive Binding Capacity of Cellulose journal October 2016
Mechanistic kinetic models of enzymatic cellulose hydrolysis-A review: Mechanistic Kinetic Models of Enzymatic Cellulose Hydrolysis journal March 2017
Structure and properties of the cellulose microfibril journal August 2009
Recent developments on cellulases and carbohydrate-binding modules with cellulose affinity journal November 2004
The effect of fibril length and architecture on the accessibility of reducing ends of cellulose Iα to Trichoderma reesei Cel7A journal April 2015
Limited proteolysis of the cellobiohydrolase I from Trichoderma reesei: Separation of functional domains journal August 1986
The impact of kinetic parameters on cellulose hydrolysis rates journal November 2018
Role of the interdomain linker peptide of Trichoderma reesei cellobiohydrolase I in its interaction with crystalline cellulose. journal October 1993
The roles and function of cellulose-binding domains journal September 1997
Rate of Threading a Cellulose Chain into the Binding Tunnel of a Cellulase journal June 2016
An Inverse Michaelis–Menten Approach for Interfacial Enzyme Kinetics journal June 2017
Transient Kinetics and Rate-Limiting Steps for the Processive Cellobiohydrolase Cel7A: Effects of Substrate Structure and Carbohydrate Binding Domain journal November 2013
Molecular-Scale Investigations of Cellulose Microstructure during Enzymatic Hydrolysis journal August 2010
Fungal Cellulases journal January 2015
The Mechanism of Cellulose Hydrolysis by a Two-Step, Retaining Cellobiohydrolase Elucidated by Structural and Transition Path Sampling Studies journal December 2013
The Energy Landscape for the Interaction of the Family 1 Carbohydrate-Binding Module and the Cellulose Surface is Altered by Hydrolyzed Glycosidic Bonds journal August 2009
Identification of Amino Acids Responsible for Processivity in a Family 1 Carbohydrate-Binding Module from a Fungal Cellulase journal January 2010
3D Electron Tomography of Pretreated Biomass Informs Atomic Modeling of Cellulose Microfibrils journal August 2013
A New Model For Enzymatic Hydrolysis of Cellulose Based on the Two-Domain Structure of Cellobiohydrolase I journal March 1991
DAOSTORM: an algorithm for high- density super-resolution microscopy journal March 2011
Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH journal September 2022
Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose journal August 2013
Nanomechanics of cellulose deformation reveal molecular defects that facilitate natural deconstruction journal April 2019
High Speed Atomic Force Microscopy Visualizes Processive Movement of Trichoderma reesei Cellobiohydrolase I on Crystalline Cellulose journal October 2009
Pre-steady-state Kinetics for Hydrolysis of Insoluble Cellulose by Cellobiohydrolase Cel7A journal April 2012
Binding and Movement of Individual Cel7A Cellobiohydrolases on Crystalline Cellulose Surfaces Revealed by Single-molecule Fluorescence Imaging journal July 2013
Kinetics of Cellobiohydrolase (Cel7A) Variants with Lowered Substrate Affinity journal September 2014
Single-molecule Imaging Analysis of Binding, Processive Movement, and Dissociation of Cellobiohydrolase Trichoderma reesei Cel6A and Its Domains on Crystalline Cellulose journal September 2016
Inter-domain Synergism Is Required for Efficient Feeding of Cellulose Chain into Active Site of Cellobiohydrolase Cel7A journal October 2016
Characterization of structures from X-ray scattering data using genetic algorithms
  • Wormington, Matthew; Panaccione, Charles; Matney, Kevin M.
  • Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences, Vol. 357, Issue 1761 https://doi.org/10.1098/rsta.1999.0469
journal October 1999
The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei journal July 1994
Achieving efficient protein expression in Trichoderma reesei by using strong constitutive promoters journal January 2012
Harnessing the potential of LPMO-containing cellulase cocktails poses new demands on processing conditions journal November 2015
Trading Off Global Fuel Supply, CO2 Emissions and Sustainable Development journal March 2016
Single-Molecule Image Sequences of Trichoderma reesei Cel7A and Variants on Cellulose Fibrils dataset January 2020
Cellulase digestibility of pretreated biomass is limited by cellulose accessibility journal January 2007
The productive cellulase binding capacity of cellulosic substrates: Productive Binding Capacity of Cellulose journal October 2016
Mechanistic kinetic models of enzymatic cellulose hydrolysis-A review: Mechanistic Kinetic Models of Enzymatic Cellulose Hydrolysis journal March 2017
High-resolution crystal structures reveal how a cellulose chain is bound in the 50 Ã… long tunnel of cellobiohydrolase I from Trichoderma reesei journal January 1998
Structure and properties of the cellulose microfibril journal August 2009
Recent developments on cellulases and carbohydrate-binding modules with cellulose affinity journal November 2004
The effect of fibril length and architecture on the accessibility of reducing ends of cellulose Iα to Trichoderma reesei Cel7A journal April 2015
Limited proteolysis of the cellobiohydrolase I from Trichoderma reesei: Separation of functional domains journal August 1986
Role of the interdomain linker peptide of Trichoderma reesei cellobiohydrolase I in its interaction with crystalline cellulose. journal October 1993
Filtering artifacts from lifetime distributions when maximizing entropy using a bootstrapped model journal August 2012
Assessing cellulose microfibrillar structure changes due to cellulase action journal September 2013
The impact of kinetic parameters on cellulose hydrolysis rates journal November 2018
Rate of Threading a Cellulose Chain into the Binding Tunnel of a Cellulase journal June 2016
An Inverse Michaelis–Menten Approach for Interfacial Enzyme Kinetics journal June 2017
Sabatier Principle for Interfacial (Heterogeneous) Enzyme Catalysis journal October 2018
Transient Kinetics and Rate-Limiting Steps for the Processive Cellobiohydrolase Cel7A: Effects of Substrate Structure and Carbohydrate Binding Domain journal November 2013
Molecular-Scale Investigations of Cellulose Microstructure during Enzymatic Hydrolysis journal August 2010
Fungal Cellulases journal January 2015
The Mechanism of Cellulose Hydrolysis by a Two-Step, Retaining Cellobiohydrolase Elucidated by Structural and Transition Path Sampling Studies journal December 2013
The Energy Landscape for the Interaction of the Family 1 Carbohydrate-Binding Module and the Cellulose Surface is Altered by Hydrolyzed Glycosidic Bonds journal August 2009
Identification of Amino Acids Responsible for Processivity in a Family 1 Carbohydrate-Binding Module from a Fungal Cellulase journal January 2010
3D Electron Tomography of Pretreated Biomass Informs Atomic Modeling of Cellulose Microfibrils journal August 2013
DAOSTORM: an algorithm for high- density super-resolution microscopy journal March 2011
Fungal cellulases journal February 1992
Climate change and health costs of air emissions from biofuels and gasoline journal February 2009
Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose journal August 2013
High Speed Atomic Force Microscopy Visualizes Processive Movement of Trichoderma reesei Cellobiohydrolase I on Crystalline Cellulose journal October 2009
Processivity of Cellobiohydrolases Is Limited by the Substrate journal November 2010
Pre-steady-state Kinetics for Hydrolysis of Insoluble Cellulose by Cellobiohydrolase Cel7A journal April 2012
Binding and Movement of Individual Cel7A Cellobiohydrolases on Crystalline Cellulose Surfaces Revealed by Single-molecule Fluorescence Imaging journal July 2013
Single-molecule Imaging Analysis of Elementary Reaction Steps of Trichoderma reesei Cellobiohydrolase I (Cel7A) Hydrolyzing Crystalline Cellulose I α and III I journal April 2014
Kinetics of Cellobiohydrolase (Cel7A) Variants with Lowered Substrate Affinity journal September 2014
Single-molecule Imaging Analysis of Binding, Processive Movement, and Dissociation of Cellobiohydrolase Trichoderma reesei Cel6A and Its Domains on Crystalline Cellulose journal September 2016
Inter-domain Synergism Is Required for Efficient Feeding of Cellulose Chain into Active Site of Cellobiohydrolase Cel7A journal October 2016
Characterization of structures from X-ray scattering data using genetic algorithms
  • Wormington, Matthew; Panaccione, Charles; Matney, Kevin M.
  • Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences, Vol. 357, Issue 1761 https://doi.org/10.1098/rsta.1999.0469
journal October 1999
Real-Time Imaging of Cellulose Reorientation during Cell Wall Expansion in Arabidopsis Roots journal December 2009
Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis journal January 1988
Actin restructuring during Salmonella typhimurium infection investigated by confocal and super-resolution microscopy journal January 2014
Traffic Jams Reduce Hydrolytic Efficiency of Cellulase on Cellulose Surface journal September 2011
The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei journal July 1994
Achieving efficient protein expression in Trichoderma reesei by using strong constitutive promoters journal January 2012
A constitutive expression system for glycosyl hydrolase family 7 cellobiohydrolases in Hypocrea jecorina journal March 2015
Harnessing the potential of LPMO-containing cellulase cocktails poses new demands on processing conditions journal November 2015
Trading Off Global Fuel Supply, CO2 Emissions and Sustainable Development journal March 2016
An Oxygen Scavenging System for Improvement of Dye Stability in Single-Molecule Fluorescence Experiments journal March 2008
Single-Molecule Image Sequences of Trichoderma reesei Cel7A and Variants on Cellulose Fibrils dataset January 2020
Harnessing the potential of LPMO-containing cellulase cocktails poses new demands on processing conditions collection January 2015

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