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Title: Association between algal productivity and phycosphere composition in an outdoor Chlorella sorokiniana reactor based on multiple longitudinal analyses

Authors:
ORCiD logo [1];  [2];  [3];  [1]
  1. School of Plant Sciences The University of Arizona 1140 E South Campus Dr Tucson AZ 85721 USA
  2. Pacific Northwest National Laboratory 1529 West Sequim Bay Road Sequim WA 98382 USA
  3. Biosystems Engineering The University of Arizona 1177 E 4th St Tucson AZ 85721 USA
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1630683
Alternate Identifier(s):
OSTI ID: 1630684
Grant/Contract Number:  
DE‐EE0006269
Resource Type:
Published Article
Journal Name:
Microbial Biotechnology (Online)
Additional Journal Information:
Journal Name: Microbial Biotechnology (Online) Journal Volume: 13 Journal Issue: 5; Journal ID: ISSN 1751-7915
Publisher:
Wiley-Blackwell
Country of Publication:
United Kingdom
Language:
English

Citation Formats

Steichen, Seth A., Gao, Song, Waller, Peter, and Brown, Judith K. Association between algal productivity and phycosphere composition in an outdoor Chlorella sorokiniana reactor based on multiple longitudinal analyses. United Kingdom: N. p., 2020. Web. doi:10.1111/1751-7915.13591.
Steichen, Seth A., Gao, Song, Waller, Peter, & Brown, Judith K. Association between algal productivity and phycosphere composition in an outdoor Chlorella sorokiniana reactor based on multiple longitudinal analyses. United Kingdom. doi:https://doi.org/10.1111/1751-7915.13591
Steichen, Seth A., Gao, Song, Waller, Peter, and Brown, Judith K. Mon . "Association between algal productivity and phycosphere composition in an outdoor Chlorella sorokiniana reactor based on multiple longitudinal analyses". United Kingdom. doi:https://doi.org/10.1111/1751-7915.13591.
@article{osti_1630683,
title = {Association between algal productivity and phycosphere composition in an outdoor Chlorella sorokiniana reactor based on multiple longitudinal analyses},
author = {Steichen, Seth A. and Gao, Song and Waller, Peter and Brown, Judith K.},
abstractNote = {},
doi = {10.1111/1751-7915.13591},
journal = {Microbial Biotechnology (Online)},
number = 5,
volume = 13,
place = {United Kingdom},
year = {2020},
month = {5}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: https://doi.org/10.1111/1751-7915.13591

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Works referenced in this record:

The host Range of the Chlorellavorous Bacterium ("Vampirovibrio Chlorellvorus")
journal, December 1986


The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex
journal, September 2010

  • Blanc, Guillaume; Duncan, Garry; Agarkova, Irina
  • The Plant Cell, Vol. 22, Issue 9
  • DOI: 10.1105/tpc.110.076406

Axenic cultures for microalgal biotechnology: Establishment, assessment, maintenance, and applications
journal, March 2018


Chlorella sorokiniana (formerly C. vulgaris) UTEX 2714, a non-thermotolerant microalga useful for biotechnological applications and as a reference strain
journal, April 2015

  • Bashan, Yoav; Lopez, Blanca R.; Huss, Volker A. R.
  • Journal of Applied Phycology, Vol. 28, Issue 1
  • DOI: 10.1007/s10811-015-0571-z

Plant-Growth-Promoting Rhizobacteria
journal, October 2009


Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics
journal, February 2012


Microbiome analysis of a microalgal mass culture growing in municipal wastewater in a prototype OMEGA photobioreactor
journal, April 2014


Compositional dissimilarity as a robust measure of ecological distance
journal, April 1987

  • Faith, Daniel P.; Minchin, Peter R.; Belbin, Lee
  • Vegetatio, Vol. 69, Issue 1-3
  • DOI: 10.1007/BF00038687

Killing of marine phytoplankton by a gliding bacterium Cytophaga sp., isolated from the coastal sea of Japan
journal, August 1993

  • Imai, I.; Ishida, Y.; Hata, Y.
  • Marine Biology, Vol. 116, Issue 4
  • DOI: 10.1007/BF00355470

Role of Rhizobium, a plant growth promoting bacterium, in enhancing algal biomass through mutualistic interaction
journal, October 2014


Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
journal, June 2013

  • Kozich, James J.; Westcott, Sarah L.; Baxter, Nielson T.
  • Applied and Environmental Microbiology, Vol. 79, Issue 17
  • DOI: 10.1128/AEM.01043-13

A Comparison of Nannochloropsis salina Growth Performance in Two Outdoor Pond Designs: Conventional Raceways versus the ARID Pond with Superior Temperature Management
journal, January 2012

  • Crowe, Braden; Attalah, Said; Agrawal, Shweta
  • International Journal of Chemical Engineering, Vol. 2012
  • DOI: 10.1155/2012/920608

A New Species of Devosia That Forms a Unique Nitrogen-Fixing Root-Nodule Symbiosis with the Aquatic Legume Neptunia natans (L.f.) Druce
journal, November 2002


Association of Vampirovibrio chlorellavorus with decline and death of Chlorella sorokiniana in outdoor reactors
journal, October 2018

  • Park, Sang-Hyuck; Steichen, Seth A.; Li, Xuehui
  • Journal of Applied Phycology, Vol. 31, Issue 2
  • DOI: 10.1007/s10811-018-1633-9

Algal diseases: spotlight on a black box
journal, November 2010

  • Gachon, Claire M. M.; Sime-Ngando, Télesphore; Strittmatter, Martina
  • Trends in Plant Science, Vol. 15, Issue 11
  • DOI: 10.1016/j.tplants.2010.08.005

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010


The Growth and Inorganic Nutrition of Scenedesmus obliquus in Mass Culture.
journal, May 1954

  • Krauss, Robert W.; Thomas, William H.
  • Plant Physiology, Vol. 29, Issue 3
  • DOI: 10.1104/pp.29.3.205

Real-time quantitative detection of Vampirovibrio chlorellavorus, an obligate bacterial pathogen of Chlorella sorokiniana
journal, October 2018


Temporal development of the gut microbiome in early childhood from the TEDDY study
journal, October 2018

  • Stewart, Christopher J.; Ajami, Nadim J.; O’Brien, Jacqueline L.
  • Nature, Vol. 562, Issue 7728
  • DOI: 10.1038/s41586-018-0617-x

A Novel Treatment Protects Chlorella at Commercial Scale from the Predatory Bacterium Vampirovibrio chlorellavorus
journal, June 2016

  • Ganuza, Eneko; Sellers, Charles E.; Bennett, Braden W.
  • Frontiers in Microbiology, Vol. 7
  • DOI: 10.3389/fmicb.2016.00848

Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances
journal, May 2008


Tolerance of Listeria monocytogenes to Quaternary Ammonium Sanitizers Is Mediated by a Novel Efflux Pump Encoded by emrE
journal, November 2015

  • Kovacevic, Jovana; Ziegler, Jennifer; Wałecka-Zacharska, Ewa
  • Applied and Environmental Microbiology, Vol. 82, Issue 3
  • DOI: 10.1128/AEM.03741-15

Establishing microbial composition measurement standards with reference frames
journal, June 2019


Conservation evaluation and phylogenetic diversity
journal, January 1992


Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships
journal, May 2017


MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
journal, January 2013

  • Katoh, K.; Standley, D. M.
  • Molecular Biology and Evolution, Vol. 30, Issue 4
  • DOI: 10.1093/molbev/mst010

The role of mycorrhizae and plant growth promoting rhizobacteria (PGPR) in improving crop productivity under stressful environments
journal, March 2014


Simulation of shading and algal growth in experimental raceways
journal, August 2019


Growing Unculturable Bacteria
journal, June 2012


A communal catalogue reveals Earth’s multiscale microbial diversity
journal, November 2017

  • Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel
  • Nature, Vol. 551, Issue 7681
  • DOI: 10.1038/nature24621

Biodiversity and application of microalgae
journal, November 1996

  • Metting, F. B.
  • Journal of Industrial Microbiology & Biotechnology, Vol. 17, Issue 5-6
  • DOI: 10.1007/BF01574779

Updating the 97% identity threshold for 16S ribosomal RNA OTUs
journal, February 2018


Comparative energy life-cycle analyses of microalgal biomass production in open ponds and photobioreactors
journal, February 2010


Incorporation of salinity, nitrogen, and shading stress factors into the Huesemann Algae Biomass Growth model
journal, November 2018


Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
journal, July 2019


Role of predatory bacteria in the termination of a cyanobacterial bloom
journal, February 2001


Lysis of a red-tide causing alga, Alexandrium tamarense, caused by bacteria from its phycosphere
journal, February 2010


A screening model to predict microalgae biomass growth in photobioreactors and raceway ponds
journal, January 2013

  • Huesemann, M. H.; Van Wagenen, J.; Miller, T.
  • Biotechnology and Bioengineering, Vol. 110, Issue 6
  • DOI: 10.1002/bit.24814

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
journal, May 2018


The rhizosphere microbiome and plant health
journal, August 2012

  • Berendsen, Roeland L.; Pieterse, Corné M. J.; Bakker, Peter A. H. M.
  • Trends in Plant Science, Vol. 17, Issue 8
  • DOI: 10.1016/j.tplants.2012.04.001

Interactions Between Bacteria and Algae in Aquatic Ecosystems
journal, November 1982


DADA2: High-resolution sample inference from Illumina amplicon data
journal, May 2016

  • Callahan, Benjamin J.; McMurdie, Paul J.; Rosen, Michael J.
  • Nature Methods, Vol. 13, Issue 7
  • DOI: 10.1038/nmeth.3869

Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny
journal, January 2011


Analysis of composition of microbiomes: a novel method for studying microbial composition
journal, May 2015

  • Mandal, Siddhartha; Van Treuren, Will; White, Richard A.
  • Microbial Ecology in Health & Disease, Vol. 26, Issue 0
  • DOI: 10.3402/mehd.v26.27663

Unicellular Cyanobacterium Symbiotic with a Single-Celled Eukaryotic Alga
journal, September 2012


The algae raceway integrated design for optimal temperature management
journal, November 2012


The interrelationships of all major groups of Platyhelminthes: phylogenetic evidence from morphology and molecules
journal, January 1999


Growth promotion of the freshwater microalga Chlorella vulgaris by the nitrogen-fixing, plant growth-promoting bacterium Bacillus pumilus from arid zone soils
journal, January 2009

  • Hernandez, Juan-Pablo; de-Bashan, Luz E.; Rodriguez, D. Johana
  • European Journal of Soil Biology, Vol. 45, Issue 1
  • DOI: 10.1016/j.ejsobi.2008.08.004

National microalgae biofuel production potential and resource demand: NATIONAL ALGAE BIOFUEL PRODUCTION
journal, March 2011

  • Wigmosta, Mark S.; Coleman, André M.; Skaggs, Richard J.
  • Water Resources Research, Vol. 47, Issue 3
  • DOI: 10.1029/2010WR009966

An effective DNA extraction protocol for brown algae
journal, June 2001


Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus
journal, January 2015

  • Soo, Rochelle M.; Woodcroft, Ben J.; Parks, Donovan H.
  • PeerJ, Vol. 3
  • DOI: 10.7717/peerj.968

Algicidal Bacteria in the Sea and their Impact on Algal Blooms1
journal, March 2004


Chemotactic and Growth Responses of Marine Bacteria to Algal Extracellular Products
journal, October 1972

  • Bell, Wayne; Mitchell, Ralph
  • The Biological Bulletin, Vol. 143, Issue 2
  • DOI: 10.2307/1540052

Review of the cultivation program within the National Alliance for Advanced Biofuels and Bioproducts
journal, March 2017


Symbiotic association in Chlorella culture
journal, January 2005


Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
journal, March 2012

  • Caporaso, J. Gregory; Lauber, Christian L.; Walters, William A.
  • The ISME Journal, Vol. 6, Issue 8
  • DOI: 10.1038/ismej.2012.8

EMPeror: a tool for visualizing high-throughput microbial community data
journal, November 2013

  • Vázquez-Baeza, Yoshiki; Pirrung, Meg; Gonzalez, Antonio
  • GigaScience, Vol. 2, Issue 1
  • DOI: 10.1186/2047-217X-2-16

Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts
journal, January 2003

  • Sawada, Hiroyuki; Kuykendall, L. David; Young, John M.
  • The Journal of General and Applied Microbiology, Vol. 49, Issue 3
  • DOI: 10.2323/jgam.49.155

Renewable fuels from algae: An answer to debatable land based fuels
journal, January 2011


An Algorithm for the Principal Component Analysis of Large Data Sets
journal, January 2011

  • Halko, Nathan; Martinsson, Per-Gunnar; Shkolnisky, Yoel
  • SIAM Journal on Scientific Computing, Vol. 33, Issue 5
  • DOI: 10.1137/100804139

Altered Microbiome Leads to Significant Phenotypic and Transcriptomic Differences in a Lipid Accumulating Chlorophyte
journal, May 2018

  • Richter, Lubna V.; Mansfeldt, Cresten B.; Kuan, Michael M.
  • Environmental Science & Technology, Vol. 52, Issue 12
  • DOI: 10.1021/acs.est.7b06581

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
journal, July 2017

  • Callahan, Benjamin J.; McMurdie, Paul J.; Holmes, Susan P.
  • The ISME Journal, Vol. 11, Issue 12
  • DOI: 10.1038/ismej.2017.119

On the mass Culture of Algae
journal, July 1951

  • Myers, Jack; Phillips, J. Neal; Graham, Jo-Ruth
  • Plant Physiology, Vol. 26, Issue 3
  • DOI: 10.1104/pp.26.3.539