Complete genome sequence of Thermobispora bispora type strain (R51T)

Liolios, Konstantinos; Sikorski, Johannes; Jando, Marlen; Lapidus, Alla; Copeland, Alex; Del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan-Fang; Han, Cliff; Woyke, Tanja; Goodwin, Lynne; Pitluck, Sam; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Chertkov, Olga; Kuske, Cheryl; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans-Peter; Kyrpides, Nikos C.

doi:10.4056/sigs.962171

Title: Complete genome sequence of Thermobispora bispora type strain (R51^T)

Journal Article · 30 June 2010 · Standards in Genomic Sciences

DOI: https://doi.org/10.4056/sigs.962171 · OSTI ID:1630549

Liolios, Konstantinos ^[1]; Sikorski, Johannes ^[2]; Jando, Marlen ^[2]; Lapidus, Alla ^[1]; Copeland, Alex ^[1]; Del Rio, Tijana Glavina ^[1]; Nolan, Matt ^[1]; Lucas, Susan ^[1]; Tice, Hope ^[1]; Cheng, Jan-Fang ^[1]; Han, Cliff ^[3]; Woyke, Tanja ^[1]; Goodwin, Lynne ^[3]; Pitluck, Sam ^[1]; Ivanova, Natalia ^[1]; Mavromatis, Konstantinos ^[1]; Mikhailova, Natalia ^[1]; Chertkov, Olga ^[1]; Kuske, Cheryl ^[1]; Chen, Amy ^[4] more »

USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Helmholtz Centre for Infection Research, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)

Thermobispora bispora (Henssen 1957) Wang et al. 1996 is the type species of the genus Thermobispora. This genus is of great interest because it is strictly thermophilic and because it has been shown for several of its members that the genome contains substantially distinct (6.4% sequence difference) and transcriptionally active 16S rRNA genes. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member from the suborder Streptosporangineae and the first genome sequence of a member of the genus Thermobispora. The 4,189,976 bp long genome with its 3,596 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: German Research Foundation (DFG); USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; AC05-00OR22725; AC52-07NA27344

OSTI ID:: 1630549

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 3 Vol. 2; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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En route to a genome-based classification of Archaea and Bacteria? Klenk, H. -P.; Göker, M. Systematic and Applied Microbiology, Vol. 33, Issue 4 https://doi.org/10.1016/j.syapm.2010.03.003	journal	June 2010
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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Woese, C. R.; Kandler, O.; Wheelis, M. L. Proceedings of the National Academy of Sciences, Vol. 87, Issue 12 https://doi.org/10.1073/pnas.87.12.4576	journal	June 1990
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EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences Kim, Byung Kwon; Lim, Young-Woon; Kim, Myungjin International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 10 https://doi.org/10.1099/ijs.0.64915-0	journal	October 2007
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Complete genome sequence of Streptosporangium roseum type strain (NI 9100T) Nolan, Matt; Sikorski, Johannes; Jando, Marlen Standards in Genomic Sciences, Vol. 2, Issue 1 https://doi.org/10.4056/sigs.631049	journal	January 2010
Complete genome sequence of Kytococcus sedentarius type strain (541T) Sims, David; Brettin, Thomas; Detter, John C. Standards in Genomic Sciences, Vol. 1, Issue 1 https://doi.org/10.4056/sigs.761	journal	July 2009

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59 BASIC BIOLOGICAL SCIENCES
GEBA
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Two distinct 16S rRNA genes
non-pathogenic
strictly thermophilic

Title: Complete genome sequence of Thermobispora bispora type strain (R51T)

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References (49)

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Title: Complete genome sequence of Thermobispora bispora type strain (R51^T)