Title: Immunological Approaches to Biomass Characterization and Utilization

Journal Article · · Frontiers in Bioengineering and Biotechnology
 [1];  [2];  [3];  [3];  [2]
  1. Univ. of Georgia, Athens, GA (United States). Complex Carbohydrate Research Center; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center (BESC); DOE/OSTI
  2. Univ. of Georgia, Athens, GA (United States). Complex Carbohydrate Research Center; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center (BESC)
  3. Univ. of Georgia, Athens, GA (United States). Complex Carbohydrate Research Center
+ Show Author Affiliations

Plant biomass is the major renewable feedstock resource for sustainable generation of alternative transportation fuels to replace fossil carbon-derived fuels. Lignocellulosic cell walls are the principal component of plant biomass. Hence, a detailed understanding of plant cell wall structure and biosynthesis is an important aspect of bioenergy research. Cell walls are dynamic in their composition and structure, varying considerably among different organs, cells, and developmental stages of plants. Hence, tools are needed that are highly efficient and broadly applicable at various levels of plant biomass-based bioenergy research. The use of plant cell wall glycan-directed probes has seen increasing use over the past decade as an excellent approach for the detailed characterization of cell walls. Large collections of such probes directed against most major cell wall glycans are currently available worldwide. The largest and most diverse set of such probes consists of cell wall glycan-directed monoclonal antibodies (McAbs). These McAbs can be used as immunological probes to comprehensively monitor the overall presence, extractability, and distribution patterns among cell types of most major cell wall glycan epitopes using two mutually complementary immunological approaches, glycome profiling (an in vitro platform) and immunolocalization (an in situ platform). Significant progress has been made recently in the overall understanding of plant biomass structure, composition, and modifications with the application of these immunological approaches. This review focuses on such advances made in plant biomass analyses across diverse areas of bioenergy research.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1630038
Journal Information:
Frontiers in Bioengineering and Biotechnology, Journal Name: Frontiers in Bioengineering and Biotechnology Vol. 3; ISSN 2296-4185
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English

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Crystal structure of a bacterial family-III cellulose-binding domain: a general mechanism for attachment to cellulose. journal November 1996
Pretreatment of Lignocellulosic Materials for Efficient Bioethanol Production book January 2007
The location of (1?3)-?-glucans in the walls of pollen tubes of Nicotiana alata using a (1?3)-?-glucan-specific monoclonal antibody journal August 1991
Localization of dibenzodioxocin substructures in lignifying Norway spruce xylem by transmission electron microscopy–immunogold labeling journal March 2003
A monoclonal antibody to feruloylated-(1?4)-?-d-galactan journal June 2004
Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis journal March 2007
High-throughput screening of monoclonal antibodies against plant cell wall glycans by hierarchical clustering of their carbohydrate microarray binding profiles journal July 2007
The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance journal March 2010
Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production journal November 2012
Characterization of a monoclonal antibody that recognizes an arabinosylated (1 → 6)-β-d-galactan epitope in plant complex carbohydrates journal October 1995
An extended set of monoclonal antibodies to pectic homogalacturonan journal September 2009
A polyclonal antibody directed against syringylpropane epitopes of native lignins journal September 2004
Unique aspects of the grass cell wall journal June 2008
Lignification: different mechanisms for a versatile polymer journal February 2015
Important new players in secondary wall synthesis journal April 2006
Analysis of pectic epitopes recognised by hybridoma and phage display monoclonal antibodies using defined oligosaccharides, polysaccharides, and enzymatic degradation journal July 2000
A method for the analysis of sugars in plant cell-wall polysaccharides by gas-liquid chromatography journal November 1967
Lignification and lignin topochemistry — an ultrastructural view journal July 2001
Evidence for Synergy between Family 2b Carbohydrate Binding Modules in Cellulomonas fimi Xylanase 11A journal February 2001
Binding Specificity and Thermodynamics of a Family 9 Carbohydrate-Binding Module from Thermotoga maritima Xylanase 10A † journal May 2001
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The X6 “Thermostabilizing” Domains of Xylanases Are Carbohydrate-Binding Modules:  Structure and Biochemistry of the Clostridium thermocellum X6b Domain † , ‡ journal May 2000
Analysis of the Surfaces of Wood Tissues and Pulp Fibers Using Carbohydrate-Binding Modules Specific for Crystalline Cellulose and Mannan journal January 2007
Genome sequencing and analysis of the model grass Brachypodium distachyon journal February 2010
The Medicago genome provides insight into the evolution of rhizobial symbioses journal November 2011
Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells journal March 2002
Heterogeneity in the chemistry, structure and function of plant cell walls journal September 2010
Development of smart anti-glycan reagents using immunized lampreys journal February 2020
Probing native lignin macromolecular configuration in Arabidopsis thaliana in specific cell wall types: Further insights into limited substrate degeneracy and assembly of the lignins of ref8, fah 1–2 and C4H::F5H lines journal January 2010
Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production journal January 2011
Investigating plant cell wall components that affect biomass recalcitrance in poplar and switchgrass journal January 2013
Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature journal January 2013
Carbohydrate-binding modules: fine-tuning polysaccharide recognition journal September 2004
Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity journal May 1998
A (13,14)-beta-glucan-specific monoclonal antibody and its use in the quantitation and immunocytochemical location of (13,14)-beta-glucans journal January 1994
Interrelation between Lignin Deposition and Polysaccharide Matrices during the Assembly of Plant Cell Walls journal January 2002
Differential recognition of plant cell walls by microbial xylan-specific carbohydrate-binding modules journal March 2006
Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects journal August 2010
Loss of function of cinnamyl alcohol dehydrogenase 1 leads to unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula journal July 2013
Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose journal August 2014
The Location of the Ligand-binding Site of Carbohydrate-binding Modules That Have Evolved from a Common Sequence Is Not Conserved journal October 2001
Recognition of the Helical Structure of β-1,4-Galactan by a New Family of Carbohydrate-binding Modules journal September 2010
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Engineered xyloglucan specificity in a carbohydrate-binding module journal July 2006
Moss and liverwort xyloglucans contain galacturonic acid and are structurally distinct from the xyloglucans synthesized by hornworts and vascular plants* journal August 2008
Structural basis for carbohydrate-binding specificity—A comparative assessment of two engineered carbohydrate-binding modules journal March 2012
Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon journal February 2013
Biochemical and physiological characterization of fut4 and fut6 mutants defective in arabinogalactan-protein fucosylation in Arabidopsis journal October 2013
Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEX TM -pre-treated biomass journal April 2015
How cell wall complexity influences saccharification efficiency in Miscanthus sinensis journal April 2015
Virus-Induced Gene Silencing Offers a Functional Genomics Platform for Studying Plant Cell Wall Formation journal September 2010
Cell Wall Biology: Perspectives from Cell Wall Imaging journal March 2011
Perturbation of Wood Cellulose Synthesis Causes Pleiotropic Effects in Transgenic Aspen journal March 2011
Inactivation of OsIRX10 Leads to Decreased Xylan Content in Rice Culm Cell Walls and Improved Biomass Saccharification journal March 2013
The irregular xylem9 Mutant is Deficient in Xylan Xylosyltransferase Activity journal September 2007
MYB83 Is a Direct Target of SND1 and Acts Redundantly with MYB46 in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis journal October 2009
Transcription switches for protoxylem and metaxylem vessel formation journal August 2005
Developmental and Tissue-Specific Structural Alterations of the Cell-Wall Polysaccharides of Arabidopsis thaliana Roots journal April 1996
Identification of Novel Genes in Arabidopsis Involved in Secondary Cell Wall Formation Using Expression Profiling and Reverse Genetics journal June 2005
SND1, a NAC Domain Transcription Factor, Is a Key Regulator of Secondary Wall Synthesis in Fibers of Arabidopsis journal November 2006
The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis journal September 2007
An Arabidopsis Cell Wall Proteoglycan Consists of Pectin and Arabinoxylan Covalently Linked to an Arabinogalactan Protein journal January 2013
Arabidopsis - a powerful model system for plant cell wall research journal March 2010
Sustainable liquid biofuels from biomass: the writing's on the walls journal May 2008
The origin and evolution of lignin biosynthesis: Tansley review journal June 2010
Engineering secondary cell wall deposition in plants journal November 2012
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica) journal April 2002
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) journal September 2006
Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production journal February 2007
The B73 Maize Genome: Complexity, Diversity, and Dynamics journal November 2009
Feedstocks for Lignocellulosic Biofuels journal August 2010
Carbohydrate Binding Modules: Biochemical Properties and Novel Applications journal June 2006
Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants journal June 2011
Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals journal July 2011
Structure and Biogenesis of the cell Walls of Grasses journal June 1996
Structure and Function of the Primary Cell Walls of Plants journal June 1984
Affinity maturation generates greatly improved xyloglucan-specific carbohydrate binding modules journal January 2009
Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality journal January 2012
Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants journal January 2012
Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance journal October 2014
Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock journal January 2015
An Integrative Approach to the Identification of Arabidopsis and Rice Genes Involved in Xylan and Secondary Wall Development journal November 2010
Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana journal January 2012
Small Molecule Probes for Plant Cell Wall Polysaccharide Imaging journal January 2012
Cell wall evolution and diversity journal January 2012
Visualizing lignin coalescence and migration through maize cell walls following thermochemical pretreatment journal December 2008
High-throughput microarray profiling of cell wall polymers during hydrothermal pre-treatment of wheat straw journal February 2010
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Automated Synthesis of Arabinoxylan-Oligosaccharides Enables Characterization of Antibodies that Recognize Plant Cell Wall Glycans journal February 2015
Crystal structure of a bacterial family-III cellulose-binding domain: a general mechanism for attachment to cellulose. journal November 1996
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Pretreatment of Lignocellulosic Materials for Efficient Bioethanol Production book January 2007
Immunological Approaches to Plant Cell Wall and Biomass Characterization: Glycome Profiling book January 2012
Immunological Approaches to Plant Cell Wall and Biomass Characterization: Immunolocalization of Glycan Epitopes book January 2012
Resin Embedding, Sectioning, and Immunocytochemical Analyses of Plant Cell Walls in Hard Tissues book August 2013
The location of (1?3)-?-glucans in the walls of pollen tubes of Nicotiana alata using a (1?3)-?-glucan-specific monoclonal antibody journal August 1991
Localization of dibenzodioxocin substructures in lignifying Norway spruce xylem by transmission electron microscopy–immunogold labeling journal March 2003
The dibenzodioxocin lignin substructure is abundant in the inner part of the secondary wall in Norway spruce and silver birch xylem journal January 2004
A monoclonal antibody to feruloylated-(1?4)-?-d-galactan journal June 2004
Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis journal March 2007
Monoclonal antibodies to rhamnogalacturonan I backbone journal March 2010
Immunolocalization of 8-5′ and 8-8′ linked structures of lignin in cell walls of Chamaecyparis obtusa using monoclonal antibodies journal October 2012
High-throughput screening of monoclonal antibodies against plant cell wall glycans by hierarchical clustering of their carbohydrate microarray binding profiles journal July 2007
The Joint BioEnergy Institute (JBEI): Developing New Biofuels by Overcoming Biomass Recalcitrance journal March 2010
Assessment of Genetic Variability of Cell Wall Degradability for the Selection of Alfalfa with Improved Saccharification Efficiency journal May 2012
Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production journal November 2012
Characterization of a monoclonal antibody that recognizes an arabinosylated (1 → 6)-β-d-galactan epitope in plant complex carbohydrates journal October 1995
Analysis of pectic epitopes recognised by hybridoma and phage display monoclonal antibodies using defined oligosaccharides, polysaccharides, and enzymatic degradation journal July 2000
A method for the analysis of sugars in plant cell-wall polysaccharides by gas-liquid chromatography journal November 1967
Partially ethylated alditol acetates as derivatives for elucidation of the glycosyl linkage-composition of polysaccharides journal April 1975
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Lignification and lignin topochemistry — an ultrastructural view journal July 2001
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Energy production from biomass (part 1): overview of biomass journal May 2002
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Xylan hydrolysis in Populus trichocarpa×P. deltoides and model substrates during hydrothermal pretreatment journal March 2015
An extended set of monoclonal antibodies to pectic homogalacturonan journal September 2009
A polyclonal antibody directed against syringylpropane epitopes of native lignins journal September 2004
Evolution and diversity of green plant cell walls journal June 2008
Revealing the structural and functional diversity of plant cell walls journal June 2008
Unique aspects of the grass cell wall journal June 2008
Lignification: different mechanisms for a versatile polymer journal February 2015
Engineering of plant cell walls for enhanced biofuel production journal June 2015
Important new players in secondary wall synthesis journal April 2006
Specificity and Affinity of Substrate Binding by a Family 17 Carbohydrate-Binding Module from Clostridium cellulovorans Cellulase 5A † journal September 2000
Evidence for Synergy between Family 2b Carbohydrate Binding Modules in Cellulomonas fimi Xylanase 11A journal February 2001
Binding Specificity and Thermodynamics of a Family 9 Carbohydrate-Binding Module from Thermotoga maritima Xylanase 10A † journal May 2001
Interaction of Polysaccharides with the N-Terminal Cellulose-Binding Domain of Cellulomonas fimi CenC. 1. Binding Specificity and Calorimetric Analysis † journal January 1996
The X6 “Thermostabilizing” Domains of Xylanases Are Carbohydrate-Binding Modules:  Structure and Biochemistry of the Clostridium thermocellum X6b Domain † , ‡ journal May 2000
Analysis of the Surfaces of Wood Tissues and Pulp Fibers Using Carbohydrate-Binding Modules Specific for Crystalline Cellulose and Mannan journal January 2007
Compositional Analysis of Lignocellulosic Feedstocks. 1. Review and Description of Methods
  • Sluiter, Justin B.; Ruiz, Raymond O.; Scarlata, Christopher J.
  • Journal of Agricultural and Food Chemistry, Vol. 58, Issue 16, p. 9043-9053 https://doi.org/10.1021/jf1008023
journal August 2010
Cellulose synthesis in the Arabidopsis secondary cell wall journal September 2004
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana journal December 2000
Genome sequencing and analysis of the model grass Brachypodium distachyon journal February 2010
The Medicago genome provides insight into the evolution of rhizobial symbioses journal November 2011
Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells journal March 2002
Lignin modification improves fermentable sugar yields for biofuel production journal June 2007
Oligosaccharide microarrays for high-throughput detection and specificity assignments of carbohydrate-protein interactions journal September 2002
Heterogeneity in the chemistry, structure and function of plant cell walls journal September 2010
Development of smart anti-glycan reagents using immunized lampreys journal February 2020
Identification of features associated with plant cell wall recalcitrance to pretreatment by alkaline hydrogen peroxide in diverse bioenergy feedstocks using glycome profiling journal January 2014
Probing native lignin macromolecular configuration in Arabidopsis thaliana in specific cell wall types: Further insights into limited substrate degeneracy and assembly of the lignins of ref8, fah 1–2 and C4H::F5H lines journal January 2010
Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production journal January 2011
Investigating plant cell wall components that affect biomass recalcitrance in poplar and switchgrass journal January 2013
Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature journal January 2013
The type II and X cellulose-binding domains of Pseudomonas xylanase A potentiate catalytic activity against complex substrates by a common mechanism journal September 1999
Carbohydrate-binding modules from a thermostable Rhodothermus marinus xylanase: cloning, expression and binding studies journal January 2000
Identification and glucan-binding properties of a new carbohydrate-binding module family journal January 2002
Carbohydrate-binding modules: fine-tuning polysaccharide recognition journal September 2004
Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity journal May 1998
The type II and X cellulose-binding domains of Pseudomonas xylanase A potentiate catalytic activity against complex substrates by a common mechanism journal August 1999
Carbohydrate-binding modules from a thermostable Rhodothermus marinus xylanase: cloning, expression and binding studies journal December 1999
Identification and glucan-binding properties of a new carbohydrate-binding module family journal December 2001
A (13,14)-beta-glucan-specific monoclonal antibody and its use in the quantitation and immunocytochemical location of (13,14)-beta-glucans journal January 1994
Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth. journal January 1993
Interrelation between Lignin Deposition and Polysaccharide Matrices during the Assembly of Plant Cell Walls journal January 2002
Printed covalent glycan array for ligand profiling of diverse glycan binding proteins journal November 2004
Differential recognition of plant cell walls by microbial xylan-specific carbohydrate-binding modules journal March 2006
Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects journal August 2010
Lignin content in natural Populus variants affects sugar release journal March 2011
Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants journal December 2010
Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass journal February 2011
4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein journal August 2012
Loss of function of cinnamyl alcohol dehydrogenase 1 leads to unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula journal July 2013
Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose journal August 2014
The Location of the Ligand-binding Site of Carbohydrate-binding Modules That Have Evolved from a Common Sequence Is Not Conserved journal October 2001
Structure of a Family 15 Carbohydrate-binding Module in Complex with Xylopentaose: EVIDENCE THAT XYLAN BINDS IN AN APPROXIMATE 3-FOLD HELICAL CONFORMATION journal October 2001
Recognition of the Helical Structure of β-1,4-Galactan by a New Family of Carbohydrate-binding Modules journal September 2010
Versatile High Resolution Oligosaccharide Microarrays for Plant Glycobiology and Cell Wall Research journal September 2012
Understanding How the Complex Molecular Architecture of Mannan-degrading Hydrolases Contributes to Plant Cell Wall Degradation journal December 2013
X4 Modules Represent a New Family of Carbohydrate-binding Modules That Display Novel Properties journal March 2004
Understanding the Biological Rationale for the Diversity of Cellulose-directed Carbohydrate-binding Modules in Prokaryotic Enzymes journal July 2006
Changes in Cell Wall Carbohydrate Extractability Are Correlated with Reduced Recalcitrance of HCT Downregulated Alfalfa Biomass journal August 2012
Comparison of Arabinoxylan Structure in Bioenergy and Model Grasses journal August 2012
Engineered xyloglucan specificity in a carbohydrate-binding module journal July 2006
Moss and liverwort xyloglucans contain galacturonic acid and are structurally distinct from the xyloglucans synthesized by hornworts and vascular plants* journal August 2008
Structural basis for carbohydrate-binding specificity—A comparative assessment of two engineered carbohydrate-binding modules journal March 2012
Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon journal February 2013
Biochemical and physiological characterization of fut4 and fut6 mutants defective in arabinogalactan-protein fucosylation in Arabidopsis journal October 2013
Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEX TM -pre-treated biomass journal April 2015
How cell wall complexity influences saccharification efficiency in Miscanthus sinensis journal April 2015
Virus-Induced Gene Silencing Offers a Functional Genomics Platform for Studying Plant Cell Wall Formation journal September 2010
Cell Wall Biology: Perspectives from Cell Wall Imaging journal March 2011
Perturbation of Wood Cellulose Synthesis Causes Pleiotropic Effects in Transgenic Aspen journal March 2011
Molecular Dissection of Xylan Biosynthesis during Wood Formation in Poplar journal July 2011
On–Off Switches for Secondary Cell Wall Biosynthesis journal March 2012
Inactivation of OsIRX10 Leads to Decreased Xylan Content in Rice Culm Cell Walls and Improved Biomass Saccharification journal March 2013
The irregular xylem9 Mutant is Deficient in Xylan Xylosyltransferase Activity journal September 2007
MYB83 Is a Direct Target of SND1 and Acts Redundantly with MYB46 in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis journal October 2009
Transcription switches for protoxylem and metaxylem vessel formation journal August 2005
Rapid Structural Phenotyping of Plant Cell Wall Mutants by Enzymatic Oligosaccharide Fingerprinting journal December 2002
Generation of Monoclonal Antibodies against Plant Cell-Wall Polysaccharides (I. Characterization of a Monoclonal Antibody to a Terminal [alpha]-(1->2)-Linked Fucosyl-Containing Epitope journal February 1994
A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies journal April 2010
Analysis of the Arabidopsis IRX9 / IRX9 - L and IRX14 / IRX14 - L Pairs of Glycosyltransferase Genes Reveals Critical Contributions to Biosynthesis of the Hemicellulose Glucuronoxylan journal April 2010
Developmental and Tissue-Specific Structural Alterations of the Cell-Wall Polysaccharides of Arabidopsis thaliana Roots journal April 1996
CELLULOSE SYNTHASE-LIKE A2, a Glucomannan Synthase, Is Involved in Maintaining Adherent Mucilage Structure in Arabidopsis Seed journal February 2014
Study of Lignification by Noninvasive Techniques in Growing Maize Internodes (An Investigation by Fourier Transform Infrared Cross-Polarization-Magic Angle Spinning 13C-Nuclear Magnetic Resonance Spectroscopy and Immunocytochemical Transmission Electron Microscopy) journal July 1997
Identification of Novel Genes in Arabidopsis Involved in Secondary Cell Wall Formation Using Expression Profiling and Reverse Genetics journal June 2005
SND1, a NAC Domain Transcription Factor, Is a Key Regulator of Secondary Wall Synthesis in Fibers of Arabidopsis journal November 2006
Arabidopsis irregular xylem8 and irregular xylem9 : Implications for the Complexity of Glucuronoxylan Biosynthesis journal February 2007
The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis journal September 2007
An Arabidopsis Cell Wall Proteoglycan Consists of Pectin and Arabinoxylan Covalently Linked to an Arabinogalactan Protein journal January 2013
Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth journal January 1993
High-throughput mapping of cell-wall polymers within and between plants using novel microarrays: Glycan microarrays for plant cell-wall analysis journal June 2007
Cell-wall carbohydrates and their modification as a resource for biofuels journal May 2008
Arabidopsis - a powerful model system for plant cell wall research journal March 2010
Restricted access of proteins to mannan polysaccharides in intact plant cell walls: Masking of mannan polysaccharides journal August 2010
Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall: DUF579 and xylan biosynthesis journal February 2011
The charophycean green algae provide insights into the early origins of plant cell walls journal August 2011
Genomics of cellulose biosynthesis in poplars: Research review journal August 2004
Sustainable liquid biofuels from biomass: the writing's on the walls journal May 2008
The origin and evolution of lignin biosynthesis: Tansley review journal June 2010
Engineering secondary cell wall deposition in plants journal November 2012
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica) journal April 2002
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica) journal April 2002
Toward a Systems Approach to Understanding Plant Cell Walls journal December 2004
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) journal September 2006
Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production journal February 2007
The B73 Maize Genome: Complexity, Diversity, and Dynamics journal November 2009
Feedstocks for Lignocellulosic Biofuels journal August 2010
Carbohydrate Binding Modules: Biochemical Properties and Novel Applications journal June 2006
Removal of Wood Components During Chlorite Delignification of Black Spruce journal April 1971
Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants journal June 2011
Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals journal July 2011
Structure and Biogenesis of the cell Walls of Grasses journal June 1996
Structure and Function of the Primary Cell Walls of Plants journal June 1984
Assembly and Enlargement of the Primary cell wall in Plants journal November 1997
Affinity maturation generates greatly improved xyloglucan-specific carbohydrate binding modules journal January 2009
Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality journal January 2012
Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants journal January 2012
Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production journal January 2013
Comparative analysis of the ability of Clostridium clariflavum strains and Clostridium thermocellumto utilize hemicellulose and unpretreated plant material journal November 2014
Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance journal October 2014
Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock journal January 2015
Monoclonal Antibodies to Plant Cell Wall Xylans and Arabinoxylans journal April 2005
An Integrative Approach to the Identification of Arabidopsis and Rice Genes Involved in Xylan and Secondary Wall Development journal November 2010
Lignin content in natural Populus variants affects sugar release text January 2011
Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana journal January 2012
Small Molecule Probes for Plant Cell Wall Polysaccharide Imaging journal January 2012
Cell wall evolution and diversity journal January 2012
Genome sequencing and analysis of the model grass Brachypodium distachyon text January 2010

Cited By (8)

Branched Pectic Galactan in Phloem-Sieve-Element Cell Walls: Implications for Cell Mechanics journal November 2017
A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin journal November 2016
Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls journal November 2017
Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus journal January 2018
Report on the Current Inventory of the Toolbox for Plant Cell Wall Analysis: Proteinaceous and Small Molecular Probes journal May 2018
Effect of Hydrothermal Processing on Hemicellulose Structure book January 2017
Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls journal November 2017
Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus journal January 2018

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
antibodies
biomass
cell walls
glycome profiling
immunolocalization