DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Characterization and Purification of Polydisperse Reconstituted Lipoproteins and Nanolipoprotein Particles

Abstract

Heterogeneity is a fact that plagues the characterization and application of many self-assembled biological constructs. The importance of obtaining particle homogeneity in biological assemblies is a critical goal, as bulk analysis tools often require identical species for reliable interpretation of the results—indeed, important tools of analysis such as x-ray diffraction typically require over 90% purity for effectiveness. This issue bears particular importance in the case of lipoproteins. Lipid-binding proteins known as apolipoproteins can self assemble with liposomes to form reconstituted high density lipoproteins (rHDLs) or nanolipoprotein particles (NLPs) when used for biotechnology applications such as the solubilization of membrane proteins. Typically, the apolipoprotein and phospholipids reactants are self assembled and even with careful assembly protocols the product often contains heterogeneous particles. In fact, size polydispersity in rHDLs and NLPs published in the literature are frequently observed, which may confound the accurate use of analytical methods. In this article, we demonstrate a procedure for producing a pure, monodisperse NLP subpopulation from a polydisperse self-assembly using size exclusion chromatography (SEC) coupled with high resolution particle imaging by atomic force microscopy (AFM). In addition, NLPs have been shown to self assemble both in the presence and absence of detergents such as cholate, yetmore » the effects of cholate on NLP polydispersity and separation has not been systematically examined. Therefore, we examined the separation properties of NLPs assembled in both the absence and presence of cholate using SEC and native gel electrophoresis. From this analysis, NLPs prepared with and without cholate showed particles with well defined diameters spanning a similar size range. However, cholate was shown to have a dramatic affect on NLP separation by SEC and native gel electrophoresis. Furthermore, under conditions where different sized NLPs were not sufficiently separated or purified by SEC, AFM was used to deconvolute the elution pattern of different sized NLPs. From this analysis we were able to purify an NLP subpopulation to 90% size homogeneity by taking extremely fine elutions from the SEC. With this purity, we generate high quality NLP crystals that were over 100 μm in size with little precipitate, which could not be obtained utilizing the traditional size exclusion techniques. This purification procedure and the methods for validation are broadly applicable to other lipoprotein particles.« less

Authors:
 [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1];  [2]
  1. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Chemistry, Materials, Earth and Life Sciences
  2. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Chemistry, Materials, Earth and Life Sciences; Georgia Inst. of Technology, Atlanta, GA (United States). School of Mechanical Engineering
Publication Date:
Research Org.:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
OSTI Identifier:
1628357
Grant/Contract Number:  
AC52-07NA27344
Resource Type:
Accepted Manuscript
Journal Name:
International Journal of Molecular Sciences (Online)
Additional Journal Information:
Journal Name: International Journal of Molecular Sciences (Online); Journal Volume: 10; Journal Issue: 7; Journal ID: ISSN 1422-0067
Publisher:
MDPI
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Biochemistry & Molecular Biology; Chemistry; apolipoproteins; nanolipoprotein particles; bilayer mimetic; nanobiotechnology; atomic force microscopy; size-exclusion chromatography; lipoprotein crystallization

Citation Formats

Blanchette, Craig, Segelke, Brent, Fischer, Nicholas, Corzett, Michele, Kuhn, Edward, Cappuccio, Jenny, Benner, William Henry, Coleman, Matthew, Chromy, Brett, Bench, Graham, Hoeprich, Paul, and Sulchek, Todd. Characterization and Purification of Polydisperse Reconstituted Lipoproteins and Nanolipoprotein Particles. United States: N. p., 2009. Web. doi:10.3390/ijms10072958.
Blanchette, Craig, Segelke, Brent, Fischer, Nicholas, Corzett, Michele, Kuhn, Edward, Cappuccio, Jenny, Benner, William Henry, Coleman, Matthew, Chromy, Brett, Bench, Graham, Hoeprich, Paul, & Sulchek, Todd. Characterization and Purification of Polydisperse Reconstituted Lipoproteins and Nanolipoprotein Particles. United States. https://doi.org/10.3390/ijms10072958
Blanchette, Craig, Segelke, Brent, Fischer, Nicholas, Corzett, Michele, Kuhn, Edward, Cappuccio, Jenny, Benner, William Henry, Coleman, Matthew, Chromy, Brett, Bench, Graham, Hoeprich, Paul, and Sulchek, Todd. Wed . "Characterization and Purification of Polydisperse Reconstituted Lipoproteins and Nanolipoprotein Particles". United States. https://doi.org/10.3390/ijms10072958. https://www.osti.gov/servlets/purl/1628357.
@article{osti_1628357,
title = {Characterization and Purification of Polydisperse Reconstituted Lipoproteins and Nanolipoprotein Particles},
author = {Blanchette, Craig and Segelke, Brent and Fischer, Nicholas and Corzett, Michele and Kuhn, Edward and Cappuccio, Jenny and Benner, William Henry and Coleman, Matthew and Chromy, Brett and Bench, Graham and Hoeprich, Paul and Sulchek, Todd},
abstractNote = {Heterogeneity is a fact that plagues the characterization and application of many self-assembled biological constructs. The importance of obtaining particle homogeneity in biological assemblies is a critical goal, as bulk analysis tools often require identical species for reliable interpretation of the results—indeed, important tools of analysis such as x-ray diffraction typically require over 90% purity for effectiveness. This issue bears particular importance in the case of lipoproteins. Lipid-binding proteins known as apolipoproteins can self assemble with liposomes to form reconstituted high density lipoproteins (rHDLs) or nanolipoprotein particles (NLPs) when used for biotechnology applications such as the solubilization of membrane proteins. Typically, the apolipoprotein and phospholipids reactants are self assembled and even with careful assembly protocols the product often contains heterogeneous particles. In fact, size polydispersity in rHDLs and NLPs published in the literature are frequently observed, which may confound the accurate use of analytical methods. In this article, we demonstrate a procedure for producing a pure, monodisperse NLP subpopulation from a polydisperse self-assembly using size exclusion chromatography (SEC) coupled with high resolution particle imaging by atomic force microscopy (AFM). In addition, NLPs have been shown to self assemble both in the presence and absence of detergents such as cholate, yet the effects of cholate on NLP polydispersity and separation has not been systematically examined. Therefore, we examined the separation properties of NLPs assembled in both the absence and presence of cholate using SEC and native gel electrophoresis. From this analysis, NLPs prepared with and without cholate showed particles with well defined diameters spanning a similar size range. However, cholate was shown to have a dramatic affect on NLP separation by SEC and native gel electrophoresis. Furthermore, under conditions where different sized NLPs were not sufficiently separated or purified by SEC, AFM was used to deconvolute the elution pattern of different sized NLPs. From this analysis we were able to purify an NLP subpopulation to 90% size homogeneity by taking extremely fine elutions from the SEC. With this purity, we generate high quality NLP crystals that were over 100 μm in size with little precipitate, which could not be obtained utilizing the traditional size exclusion techniques. This purification procedure and the methods for validation are broadly applicable to other lipoprotein particles.},
doi = {10.3390/ijms10072958},
journal = {International Journal of Molecular Sciences (Online)},
number = 7,
volume = 10,
place = {United States},
year = {Wed Jul 01 00:00:00 EDT 2009},
month = {Wed Jul 01 00:00:00 EDT 2009}
}

Works referenced in this record:

The use of asymmetrical flow field-flow fractionation in pharmaceutics and biopharmaceutics
journal, September 2004

  • Fraunhofer, Wolfgang; Winter, Gerhard
  • European Journal of Pharmaceutics and Biopharmaceutics, Vol. 58, Issue 2
  • DOI: 10.1016/j.ejpb.2004.03.034

The use of asymmetrical flow field-flow fractionation in pharmaceutics and biopharmaceutics
journal, September 2004

  • Fraunhofer, Wolfgang; Winter, Gerhard
  • European Journal of Pharmaceutics and Biopharmaceutics, Vol. 58, Issue 2
  • DOI: 10.1016/j.ejpb.2004.03.034

Different Apolipoproteins Impact Nanolipoprotein Particle Formation
journal, November 2007

  • Chromy, Brett A.; Arroyo, Erin; Blanchette, Craig D.
  • Journal of the American Chemical Society, Vol. 129, Issue 46, p. 14348-14354
  • DOI: 10.1021/ja074753y

Kinetic Stabilization and Fusion of Apolipoprotein A-2:DMPC Disks: Comparison with apoA-1 and apoC-1
journal, April 2005


Different Apolipoproteins Impact Nanolipoprotein Particle Formation
journal, November 2007

  • Chromy, Brett A.; Arroyo, Erin; Blanchette, Craig D.
  • Journal of the American Chemical Society, Vol. 129, Issue 46, p. 14348-14354
  • DOI: 10.1021/ja074753y

Complex of Human Apolipoprotein C-1 with Phospholipid:  Thermodynamic or Kinetic Stability?
journal, June 2002

  • Gursky, Olga; Gantz, Donald L.
  • Biochemistry, Vol. 41, Issue 23
  • DOI: 10.1021/bi025588w

Structural Analysis of Nanoscale Self-Assembled Discoidal Lipid Bilayers by Solid-State NMR Spectroscopy
journal, November 2006


Efficiency analysis of sampling protocols used in protein crystallization screening
journal, November 2001


Structural Analysis of Nanoscale Self-Assembled Discoidal Lipid Bilayers by Solid-State NMR Spectroscopy
journal, November 2006


Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs
journal, June 2006

  • Bayburt, Timothy H.; Grinkova, Yelena V.; Sligar, Stephen G.
  • Archives of Biochemistry and Biophysics, Vol. 450, Issue 2, p. 215-222
  • DOI: 10.1016/j.abb.2006.03.013

Apolipoprotein E•dipalmitoylphosphatidylcholine particles are ellipsoidal in solution
journal, May 2007

  • Peters-Libeu, Clare A.; Newhouse, Yvonne; Hall, Steven C.
  • Journal of Lipid Research, Vol. 48, Issue 5
  • DOI: 10.1194/jlr.m600545-jlr200

Self-Assembly of Discoidal Phospholipid Bilayer Nanoparticles with Membrane Scaffold Proteins
journal, August 2002

  • Bayburt, Timothy H.; Grinkova, Yelena V.; Sligar, Stephen G.
  • Nano Letters, Vol. 2, Issue 8, p. 853-856
  • DOI: 10.1021/nl025623k

Kinetic Stabilization and Fusion of Apolipoprotein A-2:DMPC Disks: Comparison with apoA-1 and apoC-1
journal, April 2005


Complex of Human Apolipoprotein C-1 with Phospholipid:  Thermodynamic or Kinetic Stability?
journal, June 2002

  • Gursky, Olga; Gantz, Donald L.
  • Biochemistry, Vol. 41, Issue 23
  • DOI: 10.1021/bi025588w

Apolipoprotein E structure: insights into function
journal, August 2006

  • Hatters, Danny M.; Peters-Libeu, Clare A.; Weisgraber, Karl H.
  • Trends in Biochemical Sciences, Vol. 31, Issue 8
  • DOI: 10.1016/j.tibs.2006.06.008

Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties
journal, July 2006

  • Boldog, T.; Grimme, S.; Li, M.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 31, p. 11509-11514
  • DOI: 10.1073/pnas.0604988103

Field-flow fractionation in bioanalysis: A review of recent trends
journal, March 2009

  • Roda, Barbara; Zattoni, Andrea; Reschiglian, Pierluigi
  • Analytica Chimica Acta, Vol. 635, Issue 2
  • DOI: 10.1016/j.aca.2009.01.015

Structural Analysis of Lipoprotein E Particles
journal, September 2005

  • Schneeweis, Lumelle A.; Koppaka, Vishwanath; Lund-Katz, Sissel
  • Biochemistry, Vol. 44, Issue 37
  • DOI: 10.1021/bi050872j

Imaging and manipulation of high-density lipoproteins
journal, September 1997


Disassembly of Nanodiscs with Cholate
journal, June 2007

  • Shih, Amy Y.; Freddolino, Peter L.; Sligar, Stephen G.
  • Nano Letters, Vol. 7, Issue 6
  • DOI: 10.1021/nl0706906

Conformational Reorganization of the Four-helix Bundle of Human Apolipoprotein E in Binding to Phospholipid
journal, May 2000

  • Lu, Bin; Morrow, Julie A.; Weisgraber, Karl H.
  • Journal of Biological Chemistry, Vol. 275, Issue 27, p. 20775-20781
  • DOI: 10.1074/jbc.M003508200

Apolipoprotein E structure: insights into function
journal, August 2006

  • Hatters, Danny M.; Peters-Libeu, Clare A.; Weisgraber, Karl H.
  • Trends in Biochemical Sciences, Vol. 31, Issue 8
  • DOI: 10.1016/j.tibs.2006.06.008

Disassembly of Nanodiscs with Cholate
journal, June 2007

  • Shih, Amy Y.; Freddolino, Peter L.; Sligar, Stephen G.
  • Nano Letters, Vol. 7, Issue 6
  • DOI: 10.1021/nl0706906

Isolation and Measurement of Colloids in Human Plasma by Membrane-Selective Flow Field-Flow Fractionation: Lipoproteins and Pharmaceutical Colloids
journal, August 1996

  • Li, Ping; Giddings, J. Calvin
  • Journal of Pharmaceutical Sciences, Vol. 85, Issue 8
  • DOI: 10.1021/js950335s

Self-assembly of single integral membrane proteins into soluble nanoscale phospholipid bilayers
journal, November 2003

  • Bayburt, Timothy H.; Sligar, Stephen G.
  • Protein Science, Vol. 12, Issue 11, p. 2476-2481
  • DOI: 10.1110/ps.03267503

Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties
journal, July 2006

  • Boldog, T.; Grimme, S.; Li, M.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 31, p. 11509-11514
  • DOI: 10.1073/pnas.0604988103

Directed Self-Assembly of Monodisperse Phospholipid Bilayer Nanodiscs with Controlled Size
journal, March 2004

  • Denisov, I. G.; Grinkova, Y. V.; Lazarides, A. A.
  • Journal of the American Chemical Society, Vol. 126, Issue 11
  • DOI: 10.1021/ja0393574

Double Belt Structure of Discoidal High Density Lipoproteins: Molecular Basis for Size Heterogeneity
journal, November 2004


Quantifying size distributions of nanolipoprotein particles with single-particle analysis and molecular dynamic simulations
journal, April 2008

  • Blanchette, Craig D.; Law, Richard; Benner, W. Henry
  • Journal of Lipid Research, Vol. 49, Issue 7
  • DOI: 10.1194/jlr.M700586-JLR200

Cell-free Co-expression of Functional Membrane Proteins and Apolipoprotein, Forming Soluble Nanolipoprotein Particles
journal, July 2008

  • Cappuccio, Jenny A.; Blanchette, Craig D.; Sulchek, Todd A.
  • Molecular & Cellular Proteomics, Vol. 7, Issue 11
  • DOI: 10.1074/mcp.M800191-MCP200

Double Belt Structure of Discoidal High Density Lipoproteins: Molecular Basis for Size Heterogeneity
journal, November 2004


Expression, secretion, and lipid-binding characterization of the N-terminal 17% of apolipoprotein B.
journal, August 1991

  • Herscovitz, H.; Hadzopoulou-Cladaras, M.; Walsh, M. T.
  • Proceedings of the National Academy of Sciences, Vol. 88, Issue 16
  • DOI: 10.1073/pnas.88.16.7313

Structural Analysis of Lipoprotein E Particles
journal, September 2005

  • Schneeweis, Lumelle A.; Koppaka, Vishwanath; Lund-Katz, Sissel
  • Biochemistry, Vol. 44, Issue 37
  • DOI: 10.1021/bi050872j

Self-assembly of single integral membrane proteins into soluble nanoscale phospholipid bilayers
journal, November 2003

  • Bayburt, Timothy H.; Sligar, Stephen G.
  • Protein Science, Vol. 12, Issue 11, p. 2476-2481
  • DOI: 10.1110/ps.03267503

Directed Self-Assembly of Monodisperse Phospholipid Bilayer Nanodiscs with Controlled Size
journal, March 2004

  • Denisov, I. G.; Grinkova, Y. V.; Lazarides, A. A.
  • Journal of the American Chemical Society, Vol. 126, Issue 11
  • DOI: 10.1021/ja0393574

Isolation and Measurement of Colloids in Human Plasma by Membrane-Selective Flow Field-Flow Fractionation: Lipoproteins and Pharmaceutical Colloids
journal, August 1996

  • Li, Ping; Giddings, J. Calvin
  • Journal of Pharmaceutical Sciences, Vol. 85, Issue 8
  • DOI: 10.1021/js950335s

Expression, secretion, and lipid-binding characterization of the N-terminal 17% of apolipoprotein B
journal, October 1991

  • Herscovitz, H.
  • Proceedings of the National Academy of Sciences, Vol. 88, Issue 20, p. 9375-9375
  • DOI: 10.1073/pnas.88.20.9375b

Structure of Apolipophorin-III in Discoidal Lipoproteins: INTERHELICAL DISTANCES IN THE LIPID-BOUND STATE AND CONFORMATIONAL CHANGE UPON BINDING TO LIPID
journal, March 2002

  • Garda, Horacio A.; Arrese, Estela L.; Soulages, Jose L.
  • Journal of Biological Chemistry, Vol. 277, Issue 22
  • DOI: 10.1074/jbc.M110089200

Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs
journal, June 2006

  • Bayburt, Timothy H.; Grinkova, Yelena V.; Sligar, Stephen G.
  • Archives of Biochemistry and Biophysics, Vol. 450, Issue 2, p. 215-222
  • DOI: 10.1016/j.abb.2006.03.013

Field-flow fractionation in bioanalysis: A review of recent trends
journal, March 2009

  • Roda, Barbara; Zattoni, Andrea; Reschiglian, Pierluigi
  • Analytica Chimica Acta, Vol. 635, Issue 2
  • DOI: 10.1016/j.aca.2009.01.015

Structure of apolipoprotein A-I in three homogeneous, reconstituted high density lipoprotein particles.
journal, November 1990


Discoidal complexes of A and C apolipoproteins with lipids and their reactions with lecithin: cholesterol acyltransferase.
journal, May 1984


Activation of lecithin cholesterol acyltransferase by human apolipoprotein E in discoidal complexes with lipids.
journal, July 1985


Binding of insect apolipophorin III to dimyristoylphosphatidylcholine vesicles. Evidence for a conformational change.
journal, February 1994


Characterization of apolipoprotein E-rich high density lipoproteins in familial lecithin:cholesterol acyltransferase deficiency.
journal, July 1980


Defined Apolipoprotein A-I Conformations in Reconstituted High Density Lipoprotein Discs
journal, March 1989


Two types of complexes formed by the interaction of apolipoprotein A-I with vesicles of L-alpha-dimyristoylphosphatidylcholine.
journal, March 1980


Works referencing / citing this record:

Imaging and force measurement of LDL and HDL by AFM in air and liquid
journal, January 2015


Extent of MHC Clustering Regulates Selectivity and Effectiveness of T Cell Responses
journal, December 2018

  • Anikeeva, Nadia; Fischer, Nicholas O.; Blanchette, Craig D.
  • The Journal of Immunology, Vol. 202, Issue 2
  • DOI: 10.4049/jimmunol.1801196

Isolation, Characterization, and Stability of Discretely-Sized Nanolipoprotein Particles Assembled with Apolipophorin-III
journal, July 2010