Meiosis genes in Daphnia pulexand the role of parthenogenesis in genome evolution
Abstract
Background: Thousands of parthenogenetic animal species have been described and cytogenetic manifestations of this reproductive mode are well known. However, little is understood about the molecular determinants of parthenogenesis. The Daphnia pulex genome must contain the molecular machinery for different reproductive modes: sexual (both male and female meiosis) and parthenogenetic (which is either cyclical or obligate). This feature makes D. pulex an ideal model to investigate the genetic basis of parthenogenesis and its consequences for gene and genome evolution. Here we describe the inventory of meiotic genes and their expression patterns during meiotic and parthenogenetic reproduction to help address whether parthenogenesis uses existing meiotic and mitotic machinery, or whether novel processes may be involved. Results: We report an inventory of 130 homologs representing over 40 genes encoding proteins with diverse roles in meiotic processes in the genome of D. pulex. Many genes involved in cell cycle regulation and sister chromatid cohesion are characterized by expansions in copy number. In contrast, most genes involved in DNA replication and homologous recombination are present as single copies. Notably, RECQ2 (which suppresses homologous recombination) is present in multiple copies while DMC1 is the only gene in our inventory that is absent in the Daphniamore »
- Authors:
-
- Univ. of Iowa, Iowa City, IA (United States). Dept. of Biology. Roy J. Carver Center for Comparative Genomics
- Indiana Univ., Bloomington, IN (United States). Dept. of Biology. The Center forGenomics and Bioinformatics
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Univ. of California, San Diego, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
- OSTI Identifier:
- 1626385
- Grant/Contract Number:
- AC02-05CH11231; W-7405-ENG-36; W-7405-ENG-48
- Resource Type:
- Accepted Manuscript
- Journal Name:
- BMC Evolutionary Biology (Online)
- Additional Journal Information:
- Journal Name: BMC Evolutionary Biology (Online); Journal Volume: 9; Journal Issue: 1; Journal ID: ISSN 1471-2148
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Evolutionary Biology; Genetics & Heredity
Citation Formats
Schurko, Andrew M., Logsdon, John M., and Eads, Brian D. Meiosis genes in Daphnia pulexand the role of parthenogenesis in genome evolution. United States: N. p., 2009.
Web. doi:10.1186/1471-2148-9-78.
Schurko, Andrew M., Logsdon, John M., & Eads, Brian D. Meiosis genes in Daphnia pulexand the role of parthenogenesis in genome evolution. United States. https://doi.org/10.1186/1471-2148-9-78
Schurko, Andrew M., Logsdon, John M., and Eads, Brian D. Tue .
"Meiosis genes in Daphnia pulexand the role of parthenogenesis in genome evolution". United States. https://doi.org/10.1186/1471-2148-9-78. https://www.osti.gov/servlets/purl/1626385.
@article{osti_1626385,
title = {Meiosis genes in Daphnia pulexand the role of parthenogenesis in genome evolution},
author = {Schurko, Andrew M. and Logsdon, John M. and Eads, Brian D.},
abstractNote = {Background: Thousands of parthenogenetic animal species have been described and cytogenetic manifestations of this reproductive mode are well known. However, little is understood about the molecular determinants of parthenogenesis. The Daphnia pulex genome must contain the molecular machinery for different reproductive modes: sexual (both male and female meiosis) and parthenogenetic (which is either cyclical or obligate). This feature makes D. pulex an ideal model to investigate the genetic basis of parthenogenesis and its consequences for gene and genome evolution. Here we describe the inventory of meiotic genes and their expression patterns during meiotic and parthenogenetic reproduction to help address whether parthenogenesis uses existing meiotic and mitotic machinery, or whether novel processes may be involved. Results: We report an inventory of 130 homologs representing over 40 genes encoding proteins with diverse roles in meiotic processes in the genome of D. pulex. Many genes involved in cell cycle regulation and sister chromatid cohesion are characterized by expansions in copy number. In contrast, most genes involved in DNA replication and homologous recombination are present as single copies. Notably, RECQ2 (which suppresses homologous recombination) is present in multiple copies while DMC1 is the only gene in our inventory that is absent in the Daphnia genome. Expression patterns for 44 gene copies were similar during meiosis versus parthenogenesis, although several genes displayed marked differences in expression level in germline and somatic tissues. Conclusion: We propose that expansions in meiotic gene families in D. pulex may be associated with parthenogenesis. Taking into account our findings, we provide a mechanistic model of parthenogenesis, highlighting steps that must differ from meiosis including sister chromatid cohesion and kinetochore attachment.},
doi = {10.1186/1471-2148-9-78},
journal = {BMC Evolutionary Biology (Online)},
number = 1,
volume = 9,
place = {United States},
year = {Tue Apr 21 00:00:00 EDT 2009},
month = {Tue Apr 21 00:00:00 EDT 2009}
}
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