Shifting the genomic gold standard for the prokaryotic species definition
|
journal
|
October 2009 |
Information Theory and an Extension of the Maximum Likelihood Principle
|
book
|
January 1998 |
Toward a standard in structural genome annotation for prokaryotes
|
journal
|
July 2015 |
Butyrivibrio hungatei MB2003 Competes Effectively for Soluble Sugars Released by Butyrivibrio proteoclasticus B316 T during Growth on Xylan or Pectin
|
journal
|
November 2018 |
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
|
journal
|
February 2014 |
KEGG: Kyoto Encyclopedia of Genes and Genomes
|
journal
|
January 2000 |
Metabolism of Methylglyoxal in Microorganisms
|
journal
|
January 1984 |
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
|
journal
|
May 2013 |
Alternative schemes of butyrate production in Butyrivibrio fibrisolvens and their relationship to acetate utilization, lactate production, and phylogeny
|
journal
|
April 1999 |
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
|
journal
|
September 1997 |
Isolation of previously uncultured rumen bacteria by dilution to extinction using a new liquid culture medium
|
journal
|
January 2011 |
The Bidirectional NiFe-hydrogenase in Synechocystis sp. PCC 6803 Is Reduced by Flavodoxin and Ferredoxin and Is Essential under Mixotrophic, Nitrate-limiting Conditions
|
journal
|
December 2013 |
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
|
journal
|
March 2018 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
|
journal
|
March 2010 |
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
|
journal
|
January 2009 |
Induction of xylan-degrading enzymes inButyrivibrio fibrisolvens
|
journal
|
November 1992 |
Involvement of Ech hydrogenase in energy conservation of Methanosarcina mazei: Function of Ech in energy conservation
|
journal
|
July 2010 |
Genetic Diversity and Phylogenetic Relationships among Strains of Prevotella (Bacteroides) ruminicola from the Rumen
|
journal
|
April 1994 |
The formation of microcolonies by rumen bacteria
|
journal
|
September 1980 |
Quantification of ruminal Clostridium proteoclasticum by real-time PCR using a molecular beacon approach
|
journal
|
October 2007 |
The RCSB Protein Data Bank: new resources for research and education
|
journal
|
November 2012 |
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
|
journal
|
December 2004 |
Insights into the bovine rumen plasmidome
|
journal
|
March 2012 |
Characterization of Streptococcus bovis bacteriophages
|
journal
|
June 1976 |
R: A Language for Data Analysis and Graphics
|
journal
|
September 1996 |
Multiple Sequence Alignment Using ClustalW and ClustalX
|
journal
|
August 2002 |
Fermentation of xylans byButyrivibrio fibrisolvens andThermoanaerobacter strain B6A: Utilization of uronic acids and xylanolytic activites
|
journal
|
October 1992 |
Microbial attachment and feed digestion in the rumen
|
journal
|
November 1994 |
Divergences in gene repertoire among the reference Prevotella genomes derived from distinct body sites of human
|
journal
|
January 2015 |
The Rumen: A Unique Source of Enzymes for Enhancing Livestock Production
|
journal
|
October 1996 |
The rapid generation of mutation data matrices from protein sequences
|
journal
|
January 1992 |
Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium
|
journal
|
September 2008 |
A novel mode of lactate metabolism in strictly anaerobic bacteria: A novel mode of lactate metabolism in anaerobes
|
journal
|
May 2014 |
Electron transport phosphorylation in rumen butyrivibrios: unprecedented ATP yield for glucose fermentation to butyrate
|
journal
|
June 2015 |
Digestion of cell-wall monosaccharides of ryegrass and alfalfa hays by the ruminal bacteria Fibrobacter succinogenes and Butyrivibrio fibrisolvens
|
journal
|
August 1993 |
PSimScan: Algorithm and Utility for Fast Protein Similarity Search
|
journal
|
March 2013 |
NCBI BLAST: a better web interface
|
journal
|
May 2008 |
The fate of laterally transferred genes: Life in the fast lane to adaptation or death
|
journal
|
May 2006 |
Pfam: the protein families database
|
journal
|
November 2013 |
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003
|
journal
|
December 2017 |
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
|
journal
|
October 2015 |
IMG/M: integrated genome and metagenome comparative data analysis system
|
journal
|
October 2016 |
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
|
journal
|
December 2012 |
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
|
journal
|
May 2010 |
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
|
journal
|
April 2009 |
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
|
journal
|
April 2012 |
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
|
journal
|
October 2009 |
Real-Time DNA Sequencing from Single Polymerase Molecules
|
journal
|
January 2009 |
The RDP-II (Ribosomal Database Project)
|
journal
|
January 2001 |
Bacterial Community Dynamics during Production of Registered Designation of Origin Salers Cheese as Evaluated by 16S rRNA Gene Single-Strand Conformation Polymorphism Analysis
|
journal
|
July 2003 |
Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography
|
journal
|
July 1989 |
An Ordination of the Upland Forest Communities of Southern Wisconsin
|
journal
|
February 1957 |
Flagellum Mediates Symbiosis
|
journal
|
March 2009 |
Cell wall and plasma membrane architecture of Butyrivibrio spp.
|
journal
|
March 1985 |
Numerical Taxonomy
|
journal
|
January 1973 |
Lactic acid bacterial diversity in the traditional Mexican fermented dough pozol as determined by 16S rDNA sequence analysis
|
journal
|
February 2001 |
Isolation and characteristics of a wheatbran-degrading Butyrivibrio from human faeces
|
journal
|
April 1995 |
Tracing Lifestyle Adaptation in Prokaryotic Genomes
|
journal
|
January 2012 |
Agriculture: Steps to sustainable livestock
|
journal
|
March 2014 |
Horizontal Gene Transfer Accelerates Genome Innovation and Evolution
|
journal
|
June 2003 |
CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics
|
journal
|
April 2013 |
Numerical Taxonomy
|
journal
|
March 1962 |
Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase
|
journal
|
October 2010 |
The under-recognized dominance of Verrucomicrobia in soil bacterial communities
|
journal
|
July 2011 |
GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes
|
journal
|
March 2017 |
The hydrolysis of lucerne cell-wall monosaccharide components by monocultures or pair combinations of defined ruminal bacteria
|
journal
|
March 1991 |
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
|
journal
|
May 2012 |
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
|
journal
|
July 1987 |
IMG 4 version of the integrated microbial genomes comparative analysis system
|
journal
|
October 2013 |
Some modifications in the procedure of direct sequencing of PCR amplified 16S rDNA
|
journal
|
December 1992 |
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
|
journal
|
February 2008 |
CDD: conserved domains and protein three-dimensional structure
|
journal
|
November 2012 |
Further Studies on the Isolation of Proteolytic Bacteria from the Sheep Rumen
|
journal
|
September 1962 |
A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea
|
journal
|
January 2011 |
The Rnf Complex of Clostridium ljungdahlii Is a Proton-Translocating Ferredoxin:NAD+ Oxidoreductase Essential for Autotrophic Growth
|
journal
|
December 2012 |
Metabolism of conjugated linoleic acids and 18 : 1 fatty acids by ruminal bacteria: products and mechanisms
|
journal
|
November 2009 |
The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316T Highlights Adaptation to a Polysaccharide-Rich Environment
|
journal
|
August 2010 |
Alignment of whole genomes
|
journal
|
January 1999 |
16s rDNA analysis of Bufyrivibrio fibrisolvens: phylogenetic position and relation to butyrate-producing anaerobic bacteria from the rumen of white-tailed deer
|
journal
|
October 1996 |
Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid
|
journal
|
April 2010 |
ALLPATHS: De novo assembly of whole-genome shotgun microreads
|
journal
|
February 2008 |
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
|
journal
|
November 2011 |
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
|
journal
|
February 2016 |
The large episomes of Butyrivibrio proteoclasticus B316T have arisen through intragenomic gene shuttling from the chromosome to smaller Butyrivibrio-specific plasmids
|
journal
|
July 2011 |
Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation
|
journal
|
February 2013 |
Preparation and Characterization of Monoclonal Antibodies to a Butyrivibrio sp. and Their Potential Use in the Identification of Rumen Butyrivibrios, Using an Enzyme-linked Immunosorbent Assay
|
journal
|
January 1986 |
Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen
|
journal
|
January 2003 |
Phylogenetic Analysis of Butyrivibrio Strains Reveals Three Distinct Groups of Species within the Clostridium Subphylum of the Gram-Positive Bacteria
|
journal
|
January 1996 |
Cellulolytic Bacteria Occurring in the Rumen of Sheep Conditioned to Low-protein Teff Hay
|
journal
|
March 1969 |
Metabolism of polyunsaturated fatty acids and their toxicity to the microflora of the rumen
|
journal
|
October 2006 |
Why prokaryotes have pangenomes
|
journal
|
March 2017 |
Clostridium proteoclasticum sp. nov., a Novel Proteolytic Bacterium from the Bovine Rumen
|
journal
|
July 1996 |
Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
|
journal
|
January 2011 |
Pseudobutyrivibrio ruminis gen. nov., sp. nov., a Butyrate-Producing Bacterium from the Rumen That Closely Resembles Butyrivibrio fibrisolvens in Phenotype
|
journal
|
April 1996 |
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
|
journal
|
October 2013 |
The Growth Response of Cellulolytic Acetate-utilizing and Acetate-producing Butyrivibrios to Volatile Fatty Acids and Other Nutrients
|
journal
|
October 1973 |
Food Security: The Challenge of Feeding 9 Billion People
|
journal
|
January 2010 |
Hierarchical Grouping to Optimize an Objective Function
|
journal
|
March 1963 |
The Anaerobic Monotrichous Butyric Acid-Producing Curved Rod-Shaped Bacteria of the Rumen
|
journal
|
July 1956 |
Degradation and utilization by Butyrivibrio fibrisolvens H17c of xylans with different chemical and physical properties
|
journal
|
August 1995 |
Seasonal changes in the ruminal microflora of the high-arctic Svalbard reindeer (Rangifer tarandus platyrhynchus).
|
journal
|
January 1985 |
Characterization of Several Bovine Rumen Bacteria Isolated with a Xylan Medium
|
journal
|
May 1966 |
Group-specific 16S rRNA hybridization probes for determinative and community structure studies of Butyrivibrio fibrisolvens in the rumen
|
journal
|
April 1997 |
Some Nutritional Characteristics of Predominant Culturable Ruminal Bacteria
|
journal
|
October 1962 |
SEROLOGICAL ANALYSIS OF BUTYRIVIBRIO FROM THE BOVINE RUMEN
|
journal
|
October 1963 |
Fermentation of xylans by Butyrivibrio fibrisolvens and other ruminal bacteria
|
journal
|
December 1987 |
Isolation of Plasmid DNA from Butyrivibrio fibrisolvens
|
journal
|
February 1982 |
Isolation and characterization of a bacteriocin (Butyrivibriocin AR10) from the ruminal anaerobe Butyrivibrio fibrisolvens AR10: evidence in support of the widespread occurrence of bacteriocin-like activity among ruminal isolates of B. fibrisolvens
|
journal
|
February 1997 |
Plasmid-associated transfer of tetracycline resistance in Bacteroides ruminicola
|
journal
|
April 1988 |
Evidence for natural transfer of a tetracycline resistance gene between bacteria from the human colon and bacteria from the bovine rumen
|
journal
|
April 1992 |
The Use of Semi-solid Agar for the Detection of Bacterial Motility
|
journal
|
June 1936 |
Molecular profiling of microbial community structure and their CAZymes via metagenomics, from Tsomgo lake in the Eastern Himalayas
|
journal
|
April 2021 |
Alcohol pretreatment of stools effect on culturomics
|
journal
|
March 2020 |
Hierarchical Grouping to Optimize an Objective Function
|
journal
|
March 1963 |
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
|
journal
|
January 2007 |
Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis
|
journal
|
September 2020 |
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
|
text
|
January 2015 |
R: A Language for Data Analysis and Graphics
|
journal
|
September 1996 |
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
|
journal
|
May 2014 |
The Rumen: A Unique Source of Enzymes for Enhancing Livestock Production
|
journal
|
October 1996 |
Buttiauxella massiliensis sp. nov., Isolated from a Human Bone Infection
|
journal
|
January 2022 |
Evaluating the effects of causes of death on postmortem interval estimation by ATR-FTIR spectroscopy
|
journal
|
March 2019 |
Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation
|
journal
|
February 2013 |
Isolation of previously uncultured rumen bacteria by dilution to extinction using a new liquid culture medium
|
journal
|
January 2011 |
The under-recognized dominance of Verrucomicrobia in soil bacterial communities
|
journal
|
July 2011 |
Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid
|
journal
|
April 2010 |
Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria
|
journal
|
December 2003 |
Numerical Taxonomy
|
journal
|
March 1962 |
Agriculture: Steps to sustainable livestock
|
journal
|
March 2014 |
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
|
journal
|
March 2018 |
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
|
journal
|
May 2010 |
Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments
|
journal
|
June 2021 |
New globally distributed bacterial phyla within the FCB superphylum
|
journal
|
December 2022 |
Red versus green leaves: transcriptomic comparison of foliar senescence between two Prunus cerasifera genotypes
|
journal
|
February 2020 |
Shifting the genomic gold standard for the prokaryotic species definition
|
journal
|
October 2009 |
Insights into the bovine rumen plasmidome
|
journal
|
March 2012 |
Horizontal Gene Transfer Accelerates Genome Innovation and Evolution
|
journal
|
June 2003 |
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
|
journal
|
October 2013 |
Alignment of whole genomes
|
journal
|
January 1999 |
The RCSB Protein Data Bank: new resources for research and education
|
journal
|
November 2012 |
CDD: conserved domains and protein three-dimensional structure
|
journal
|
November 2012 |
Pfam: the protein families database
|
journal
|
November 2013 |
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
|
journal
|
July 1987 |
Genetic Diversity and Phylogenetic Relationships among Strains of Prevotella (Bacteroides) ruminicola from the Rumen
|
journal
|
April 1994 |
Phylogenetic Analysis of Butyrivibrio Strains Reveals Three Distinct Groups of Species within the Clostridium Subphylum of the Gram-Positive Bacteria
|
journal
|
January 1996 |
Clostridium proteoclasticum sp. nov., a Novel Proteolytic Bacterium from the Bovine Rumen
|
journal
|
July 1996 |
Preparation and Characterization of Monoclonal Antibodies to a Butyrivibrio sp. and Their Potential Use in the Identification of Rumen Butyrivibrios, Using an Enzyme-linked Immunosorbent Assay
|
journal
|
January 1986 |
Further Studies on the Isolation of Proteolytic Bacteria from the Sheep Rumen
|
journal
|
September 1962 |
Cellulolytic Bacteria Occurring in the Rumen of Sheep Conditioned to Low-protein Teff Hay
|
journal
|
March 1969 |
The Growth Response of Cellulolytic Acetate-utilizing and Acetate-producing Butyrivibrios to Volatile Fatty Acids and Other Nutrients
|
journal
|
October 1973 |
Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium
|
journal
|
September 2008 |
Metabolism of conjugated linoleic acids and 18 : 1 fatty acids by ruminal bacteria: products and mechanisms
|
journal
|
November 2009 |
ALLPATHS: De novo assembly of whole-genome shotgun microreads
|
journal
|
February 2008 |
The hydrolysis of lucerne cell-wall monosaccharide components by monocultures or pair combinations of defined ruminal bacteria
|
journal
|
March 1991 |
Isolation and characteristics of a wheatbran-degrading Butyrivibrio from human faeces
|
journal
|
April 1995 |
Involvement of Ech hydrogenase in energy conservation of Methanosarcina mazei: Function of Ech in energy conservation
|
journal
|
July 2010 |
Flagellum Mediates Symbiosis
|
journal
|
March 2009 |
Food Security: The Challenge of Feeding 9 Billion People
|
journal
|
January 2010 |
Plasmid-associated transfer of tetracycline resistance in Bacteroides ruminicola
|
journal
|
April 1988 |
Evidence for natural transfer of a tetracycline resistance gene between bacteria from the human colon and bacteria from the bovine rumen
|
journal
|
April 1992 |
Degradation and utilization by Butyrivibrio fibrisolvens H17c of xylans with different chemical and physical properties
|
journal
|
August 1995 |
Group-specific 16S rRNA hybridization probes for determinative and community structure studies of Butyrivibrio fibrisolvens in the rumen
|
journal
|
April 1997 |
Bacterial Community Dynamics during Production of Registered Designation of Origin Salers Cheese as Evaluated by 16S rRNA Gene Single-Strand Conformation Polymorphism Analysis
|
journal
|
July 2003 |
The Anaerobic Monotrichous Butyric Acid-Producing Curved Rod-Shaped Bacteria of the Rumen
|
journal
|
July 1956 |
Some Nutritional Characteristics of Predominant Culturable Ruminal Bacteria
|
journal
|
October 1962 |
Characterization of Several Bovine Rumen Bacteria Isolated with a Xylan Medium
|
journal
|
May 1966 |
Characterization of Streptococcus bovis bacteriophages
|
journal
|
June 1976 |
The formation of microcolonies by rumen bacteria
|
journal
|
September 1980 |
Digestion of cell-wall monosaccharides of ryegrass and alfalfa hays by the ruminal bacteria Fibrobacter succinogenes and Butyrivibrio fibrisolvens
|
journal
|
August 1993 |
Metabolism of Methylglyoxal in Microorganisms
|
journal
|
October 1984 |
Toward a standard in structural genome annotation for prokaryotes
|
journal
|
July 2015 |
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
|
journal
|
February 2016 |
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003
|
journal
|
December 2017 |
Comparative genomics of Butyrivibrio and Pseudobutyrivibrio from the rumen.
|
text
|
January 2016 |
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
|
journal
|
April 2009 |
The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316T Highlights Adaptation to a Polysaccharide-Rich Environment
|
journal
|
August 2010 |
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
|
journal
|
December 2012 |
PSimScan: Algorithm and Utility for Fast Protein Similarity Search
|
journal
|
March 2013 |
CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics
|
journal
|
April 2013 |
An Ordination of the Upland Forest Communities of Southern Wisconsin
|
journal
|
February 1957 |
Microbial attachment and feed digestion in the rumen
|
journal
|
November 1994 |
Do Ruminal Bacteria Exchange Genetic Material?
|
journal
|
August 1996 |
Are Ruminal Bacteria Armed with Bacteriocins?
|
journal
|
December 1996 |
Tracing Lifestyle Adaptation in Prokaryotic Genomes
|
journal
|
January 2012 |
Electron transport phosphorylation in rumen butyrivibrios: unprecedented ATP yield for glucose fermentation to butyrate
|
journal
|
June 2015 |