Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry

Paver, Sara F.; Newton, Ryan J.; Coleman, Maureen L.

doi:10.1111/1462-2920.14862

Title: Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry

Journal Article · 22 November 2019 · Environmental Microbiology

DOI: https://doi.org/10.1111/1462-2920.14862 · OSTI ID:1625853

^[1]; Newton, Ryan J. ^[2];

^[3]

Univ. of Chicago, IL (United States). Dept. of the Geophysical Sciences; DOE/OSTI
Univ. of Wisconsin, Milwaukee, WI (United States). School of Freshwater Sciences
Univ. of Chicago, IL (United States). Dept. of the Geophysical Sciences

The Laurentian Great Lakes are a vast, interconnected freshwater system spanning strong physicochemical gradients, thus constituting a powerful natural laboratory for addressing fundamental questions about microbial ecology and evolution. We present a comparative analysis of pelagic microbial communities across all five Laurentian Great Lakes, focusing on Bacterial and Archaeal picoplankton characterized via 16S rRNA amplicon sequencing. We collected samples throughout the water column from the major basins of each lake in spring and summer over 2 years. Two oligotypes, classified as LD12 (Alphaproteobacteria) and acI-B1 (Actinobacteria), were among the most abundant in every sample. At the same time, microbial communities showed distinct patterns with depth during summer stratification. Deep hypolimnion samples were frequently dominated by a Chloroflexi oligotype that reached up to 19% relative abundance. Stratified surface communities differed between the colder, less productive upper lakes (Superior, Michigan, Huron) and warmer, more productive lower lakes (Erie, Ontario), in part due to an Actinobacteria oligotype (acI-C2) that averaged 7.7% of sequences in the lower lakes but <0.2% in the upper lakes. Together, our findings suggest that both hydrologic connectivity and local selective pressures shape microbial communities in the Great Lakes and establish a framework for future investigations.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1625853

Journal Information:: Environmental Microbiology, Journal Name: Environmental Microbiology Journal Issue: 1 Vol. 22; ISSN 1462-2912

Publisher:: WileyCopyright Statement

Country of Publication:: United States

Language:: English

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The Potential for CO2-Induced Acidification in Freshwater: A Great Lakes Case Study [English] Phillips, Jennifer; McKinley, Galen; Bennington, Val Oceanography, Vol. 25, Issue 2 https://doi.org/10.5670/oceanog.2015.37	journal	June 2015
Rating impacts in a multi-stressor world: a quantitative assessment of 50 stressors affecting the Great Lakes Smith, Sigrid D. P.; McIntyre, Peter B.; Halpern, Benjamin S. Figshare https://doi.org/10.6084/m9.figshare.c.3296780	collection	January 2016
Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. Salcher, Michaela M.; Schaefle, Daniel; Kaspar, Melissa Springer Nature https://doi.org/10.7892/boris.138188	text	January 2019

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