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Title: Conformational heterogeneity in closed and open states of the KcsA potassium channel in lipid bicelles

Journal Article · · Journal of General Physiology

The process of ion channel gating—opening and closing—involves local and global structural changes in the channel in response to external stimuli. Conformational changes depend on the energetic landscape that underlies the transition between closed and open states, which plays a key role in ion channel gating. For the prokaryotic, pH-gated potassium channel KcsA, closed and open states have been extensively studied using structural and functional methods, but the dynamics within each of these functional states as well as the transition between them is not as well understood. In this study, we used solution nuclear magnetic resonance (NMR) spectroscopy to investigate the conformational transitions within specific functional states of KcsA. We incorporated KcsA channels into lipid bicelles and stabilized them into a closed state by using either phosphatidylcholine lipids, known to favor the closed channel, or mutations designed to trap the channel shut by disulfide cross-linking. A distinct state, consistent with an open channel, was uncovered by the addition of cardiolipin lipids. Using selective amino acid labeling at locations within the channel that are known to move during gating, we observed at least two different slowly interconverting conformational states for both closed and open channels. The pH dependence of these conformations and the predictable disruptions to this dependence observed in mutant channels with altered pH sensing highlight the importance of conformational heterogeneity for KcsA gating.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Institutes of Health (NIH); National Institute of General Medical Sciences (NIGMS); New York State Foundation for Science, Technology, and Innovation (NYSTAR)
Grant/Contract Number:
AC02-76SF00515; RO1GM088352; RO1GM088352-S1; R37AG019391
OSTI ID:
1625215
Journal Information:
Journal of General Physiology, Vol. 148, Issue 2; ISSN 0022-1295
Publisher:
Rockefeller University PressCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 15 works
Citation information provided by
Web of Science

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A structural link between inactivation and block of a K+ channel journal May 2008
Molecular determinants of gating at the potassium-channel selectivity filter journal March 2006
Conformational dynamics of the KcsA potassium channel governs gating properties journal October 2007
Molecular mechanism of pH sensing in KcsA potassium channels journal April 2008
Protonation state of E71 in KcsA and its role for channel collapse and inactivation journal August 2012
Amphipathic antenna of an inward rectifier K+ channel responds to changes in the inner membrane leaflet journal December 2012
Transmembrane allosteric coupling of the gates in a potassium channel journal December 2013
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Molecular Architecture of Full-Length KcsA : Role of Cytoplasmic Domains in Ion Permeation and Activation Gating journal January 2001
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A Quantitative Description of KcsA Gating I: Macroscopic Currents journal October 2007
Molecular interactions involved in proton-dependent gating in KcsA potassium channels journal November 2013
Inactivation of the Potassium Conductance and Related Phenomena Caused by Quaternary Ammonium Ion Injection in Squid Axons journal November 1969
NMR study of the tetrameric KcsA potassium channel in detergent micelles journal March 2006
Structural Rearrangements Underlying K+-Channel Activation Gating journal July 1999
Probing the Energy Landscape of Activation Gating of the Bacterial Potassium Channel KcsA journal May 2013
The Interfacial Lipid Binding Site on the Potassium Channel KcsA Is Specific for Anionic Phospholipids journal December 2005

Cited By (9)

Investigation of a KcsA Cytoplasmic pH Gate in Lipoprotein Nanodiscs journal January 2019
NMR Perspectives of the KcsA Potassium Channel in the Membrane Environment journal August 2019
Ion–peptide interactions between alkali metal ions and a termini-protected dipeptide: modeling a portion of the selectivity filter in K + channels journal January 2019
Opening leads to closing: Allosteric crosstalk between the activation and inactivation gates in KcsA journal August 2018
Rapid constriction of the selectivity filter underlies C-type inactivation in the KcsA potassium channel journal August 2018
Changing perspectives on how the permeation pathway through potassium channels is regulated journal November 2019
Rapid constriction of the selectivity filter underlies C-type inactivation in the KcsA potassium channel journal August 2018
Opening leads to closing: Allosteric crosstalk between the activation and inactivation gates in KcsA journal August 2018
Spotlight on the Ballet of Proteins: The Structural Dynamic Properties of Proteins Illuminated by Solution NMR journal March 2020

Figures / Tables (7)


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