In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
Abstract
We investigated Bacteroidetes during spring algae blooms in the southern North Sea in 2010–2012 using a time series of 38 deeply sequenced metagenomes. Initial partitioning yielded 6455 bins, from which we extracted 3101 metagenome-assembled genomes (MAGs) including 1286 Bacteroidetes MAGs covering ~120 mostly uncultivated species. We identified 13 dominant, recurrent Bacteroidetes clades carrying a restricted set of conserved polysaccharide utilization loci (PULs) that likely mediate the bulk of bacteroidetal algal polysaccharide degradation. The majority of PULs were predicted to target the diatom storage polysaccharide laminarin, alpha-glucans, alpha-mannose-rich substrates, and sulfated xylans. Metaproteomics at 14 selected points in time revealed expression of SusC-like proteins from PULs targeting all of these substrates. Analyses of abundant key players and their PUL repertoires over time furthermore suggested that fewer and simpler polysaccharides dominated early bloom stages, and that more complex polysaccharides became available as blooms progressed.
- Authors:
-
- Max Planck Inst. for Marine Microbiology, Bremen (Germany)
- USDOE Joint Genome Inst. (JGI), Walnut Creek, CA (United States)
- Univ. Greifswald (Germany)
- Univ. Greifswald (Germany); Inst. of Marine Biotechnology, Greifswald (Germany)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); USDOE Joint Genome Inst. (JGI), Walnut Creek, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC); Max Planck Society; German Research Foundation (DFG)
- OSTI Identifier:
- 1624027
- Grant/Contract Number:
- AC02-05CH11231; AM 73/9-1; TE 813/2-1; BE 3869/4-1; SCHW 595/10-1
- Resource Type:
- Accepted Manuscript
- Journal Name:
- The ISME Journal
- Additional Journal Information:
- Journal Volume: 13; Journal Issue: 11; Journal ID: ISSN 1751-7362
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Environmental Sciences & Ecology; Microbiology; Biodiversity; Metagenomics; Microbial Ecology; Proteomics
Citation Formats
Krüger, Karen, Chafee, Meghan, Francis, T. Ben, Glavina del Rio, Tijana, Becher, Dörte, Schweder, Thomas, Amann, Rudolf I., and Teeling, Hanno. In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. United States: N. p., 2019.
Web. doi:10.1038/s41396-019-0476-y.
Krüger, Karen, Chafee, Meghan, Francis, T. Ben, Glavina del Rio, Tijana, Becher, Dörte, Schweder, Thomas, Amann, Rudolf I., & Teeling, Hanno. In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. United States. https://doi.org/10.1038/s41396-019-0476-y
Krüger, Karen, Chafee, Meghan, Francis, T. Ben, Glavina del Rio, Tijana, Becher, Dörte, Schweder, Thomas, Amann, Rudolf I., and Teeling, Hanno. Wed .
"In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes". United States. https://doi.org/10.1038/s41396-019-0476-y. https://www.osti.gov/servlets/purl/1624027.
@article{osti_1624027,
title = {In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes},
author = {Krüger, Karen and Chafee, Meghan and Francis, T. Ben and Glavina del Rio, Tijana and Becher, Dörte and Schweder, Thomas and Amann, Rudolf I. and Teeling, Hanno},
abstractNote = {We investigated Bacteroidetes during spring algae blooms in the southern North Sea in 2010–2012 using a time series of 38 deeply sequenced metagenomes. Initial partitioning yielded 6455 bins, from which we extracted 3101 metagenome-assembled genomes (MAGs) including 1286 Bacteroidetes MAGs covering ~120 mostly uncultivated species. We identified 13 dominant, recurrent Bacteroidetes clades carrying a restricted set of conserved polysaccharide utilization loci (PULs) that likely mediate the bulk of bacteroidetal algal polysaccharide degradation. The majority of PULs were predicted to target the diatom storage polysaccharide laminarin, alpha-glucans, alpha-mannose-rich substrates, and sulfated xylans. Metaproteomics at 14 selected points in time revealed expression of SusC-like proteins from PULs targeting all of these substrates. Analyses of abundant key players and their PUL repertoires over time furthermore suggested that fewer and simpler polysaccharides dominated early bloom stages, and that more complex polysaccharides became available as blooms progressed.},
doi = {10.1038/s41396-019-0476-y},
journal = {The ISME Journal},
number = 11,
volume = 13,
place = {United States},
year = {2019},
month = {7}
}
Web of Science
Figures / Tables:

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