A comparative genomics study of 23 Aspergillus species from section Flavi

Kjærbølling, Inge; Vesth, Tammi; Frisvad, Jens C.; Nybo, Jane L.; Theobald, Sebastian; Kildgaard, Sara; Petersen, Thomas Isbrandt; Kuo, Alan; Sato, Atsushi; Lyhne, Ellen K.; Kogle, Martin E.; Wiebenga, Ad; Kun, Roland S.; Lubbers, Ronnie J. M.; Mäkelä, Miia R.; Barry, Kerrie; Chovatia, Mansi; Clum, Alicia; Daum, Chris; Haridas, Sajeet; He, Guifen; LaButti, Kurt; Lipzen, Anna; Mondo, Stephen; Pangilinan, Jasmyn; Riley, Robert; Salamov, Asaf; Simmons, Blake A.; Magnuson, Jon K.; Henrissat, Bernard; Mortensen, Uffe H.; Larsen, Thomas O.; de Vries, Ronald P.; Grigoriev, Igor V.; Machida, Masayuki; Baker, Scott E.; Andersen, Mikael R.

doi:10.1038/s41467-019-14051-y

Title: A comparative genomics study of 23 Aspergillus species from section Flavi

Journal Article · 27 February 2020 · Nature Communications

DOI: https://doi.org/10.1038/s41467-019-14051-y · OSTI ID:1619580

Kjærbølling, Inge; Vesth, Tammi;

; Nybo, Jane L.; Theobald, Sebastian; Kildgaard, Sara; Petersen, Thomas Isbrandt; Kuo, Alan; Sato, Atsushi; Lyhne, Ellen K.; Kogle, Martin E.; Wiebenga, Ad; Kun, Roland S.; Lubbers, Ronnie J. M.;

; Barry, Kerrie; Chovatia, Mansi; Clum, Alicia; Daum, Chris;

Not Available

View Journal Article

Cite

Export

Save

Research Organization:: Joint BioEnergy Institute (JBEI), Emeryville, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Pacific Northwest National Lab. (PNNL), Richland, WA (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

Sponsoring Organization:: Danish National Research Foundation; Jorck Foundation; USDOE Office of Science (SC); USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); Villium Foundation; Villum Foundation

Grant/Contract Number:: AC02-05CH11231; AC05-76RL01830

OSTI ID:: 1619580

Report Number(s):: PNNL--SA-146998; 1106; PII: 14051

Journal Information:: Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 11; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United Kingdom

Language:: English

References (91)

Identification of a Hybrid PKS/NRPS Required for Pseurotin A Biosynthesis in the Human PathogenAspergillus fumigatus Maiya, Shubha; Grundmann, Alexander; Li, Xiang ChemBioChem, Vol. 8, Issue 14 https://doi.org/10.1002/cbic.200700202	journal	September 2007
A thermostable maltose-tolerantα-amylase fromAspergillus tamarii Moreira, Fabiana Guillen; Lenartovicz, Veridiana; Peralta, Rosane Marina Journal of Basic Microbiology, Vol. 44, Issue 1 https://doi.org/10.1002/jobm.200310302	journal	February 2004
A novel pectin-degrading enzyme complex from Aspergillus sojae ATCC 20235 mutants Mata-Gómez, Marco A.; Heerd, Doreen; Oyanguren-García, Iñigo Journal of the Science of Food and Agriculture, Vol. 95, Issue 7 https://doi.org/10.1002/jsfa.6864	journal	September 2014
On the safety of Aspergillus oryzae: a review Barbesgaard, Peder; Heldt-Hansen, HansPeter; Diderichsen, B�rge Applied Microbiology and Biotechnology, Vol. 36, Issue 5 https://doi.org/10.1007/BF00183230	journal	February 1992
The developmentally regulated Aspergillus nidulans wA gene encodes a polypeptide homologous to polyketide and fatty acid synthases Mayorga, María E.; Timberlake, William E. Molecular and General Genetics MGG, Vol. 235, Issue 2-3 https://doi.org/10.1007/BF00279362	journal	November 1992
Microprep protocol for extraction of DNA from tomato and other herbaceous plants Fulton, Theresa M.; Chunwongse, Julapark; Tanksley, Steven D. Plant Molecular Biology Reporter, Vol. 13, Issue 3 https://doi.org/10.1007/BF02670897	journal	September 1995
Safety of the fungal workhorses of industrial biotechnology: update on the mycotoxin and secondary metabolite potential of Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei Frisvad, Jens C.; Møller, Lars L. H.; Larsen, Thomas O. Applied Microbiology and Biotechnology, Vol. 102, Issue 22 https://doi.org/10.1007/s00253-018-9354-1	journal	October 2018
Evaluation of holocellulase production by plant-degrading fungi grown on agro-industrial residues de Siqueira, Félix Gonçalves; de Siqueira, Aline Gonçalves; de Siqueira, Eliane Gonçalves Biodegradation, Vol. 21, Issue 5 https://doi.org/10.1007/s10532-010-9346-z	journal	March 2010
Identification of a Major Xylanase from Aspergillus flavus as a 14-kD Protein Mellon, Jay E.; Cotty, Peter J.; Callicott, Kenneth A. Mycopathologia, Vol. 172, Issue 4 https://doi.org/10.1007/s11046-011-9425-7	journal	April 2011
Production, Purification, Immobilization, and Characterization of a Thermostable β-Galactosidase from Aspergillus alliaceus Sen, Sucharita; Ray, Lalitagauri; Chattopadhyay, Parimal Applied Biochemistry and Biotechnology, Vol. 167, Issue 7 https://doi.org/10.1007/s12010-012-9732-6	journal	May 2012
Purification and characterization of two xylanases and an arabinofuranosidase from Aspergillus sojae Kimura, Isao; Sasahara, Hiroyuki; Tajima, Shigeyuki Journal of Fermentation and Bioengineering, Vol. 80, Issue 4 https://doi.org/10.1016/0922-338X(95)94200-B	journal	January 1995
Effect of easily metabolizable sugars in the production of xylanase by Aspergillus tamarii in solid-state fermentation Farani de Souza, Daniela; Giatti Marques de Souza, Cristina; Peralta, Rosane Marina Process Biochemistry, Vol. 36, Issue 8-9 https://doi.org/10.1016/S0032-9592(00)00295-8	journal	March 2001
Isolation of fungi from dung of wild herbivores for application in bioethanol production Makhuvele, Rhulani; Ncube, Ignatious; Jansen van Rensburg, Elbert Lukas Brazilian Journal of Microbiology, Vol. 48, Issue 4 https://doi.org/10.1016/j.bjm.2016.11.013	journal	October 2017
Characterization of a Silent Azaphilone Gene Cluster from Aspergillus niger ATCC 1015 Reveals a Hydroxylation-Mediated Pyran-Ring Formation Zabala, Angelica O.; Xu, Wei; Chooi, Yit-Heng Chemistry & Biology, Vol. 19, Issue 8 https://doi.org/10.1016/j.chembiol.2012.07.004	journal	August 2012
The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae Gibbons, John G.; Salichos, Leonidas; Slot, Jason C. Current Biology, Vol. 22, Issue 15 https://doi.org/10.1016/j.cub.2012.05.033	journal	August 2012
SMURF: Genomic mapping of fungal secondary metabolite clusters Khaldi, Nora; Seifuddin, Fayaz T.; Turner, Geoff Fungal Genetics and Biology, Vol. 47, Issue 9 https://doi.org/10.1016/j.fgb.2010.06.003	journal	September 2010
Identification and functional analysis of the aspergillic acid gene cluster in Aspergillus flavus Lebar, Matthew D.; Cary, Jeffrey W.; Majumdar, Rajtilak Fungal Genetics and Biology, Vol. 116 https://doi.org/10.1016/j.fgb.2018.04.009	journal	July 2018
CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy Zuo, Guanghong; Hao, Bailin Genomics, Proteomics & Bioinformatics, Vol. 13, Issue 5 https://doi.org/10.1016/j.gpb.2015.08.004	journal	October 2015
GH11 xylanase from Aspergillus tamarii Kita: Purification by one-step chromatography and xylooligosaccharides hydrolysis monitored in real-time by mass spectrometry Heinen, P. R.; Bauermeister, A.; Ribeiro, L. F. International Journal of Biological Macromolecules, Vol. 108 https://doi.org/10.1016/j.ijbiomac.2017.11.150	journal	March 2018
Aspergillus is monophyletic: Evidence from multiple gene phylogenies and extrolites profiles Kocsubé, S.; Perrone, G.; Magistà, D. Studies in Mycology, Vol. 85 https://doi.org/10.1016/j.simyco.2016.11.006	journal	September 2016
Taxonomy of Aspergillus section Flavi and their production of aflatoxins, ochratoxins and other mycotoxins Frisvad, J. C.; Hubka, V.; Ezekiel, C. N. Studies in Mycology, Vol. 93 https://doi.org/10.1016/j.simyco.2018.06.001	journal	June 2019
Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli Mäkelä, M. R.; DiFalco, M.; McDonnell, E. Studies in Mycology, Vol. 91 https://doi.org/10.1016/j.simyco.2018.09.001	journal	September 2018
Chrysogine Biosynthesis Is Mediated by a Two-Module Nonribosomal Peptide Synthetase Wollenberg, Rasmus Dam; Saei, Wagma; Westphal, Klaus Ringsborg Journal of Natural Products, Vol. 80, Issue 7 https://doi.org/10.1021/acs.jnatprod.6b00822	journal	June 2017
The Fumagillin Biosynthetic Gene Cluster in Aspergillus fumigatus Encodes a Cryptic Terpene Cyclase Involved in the Formation of β- trans -Bergamotene Lin, Hsiao-Ching; Chooi, Yit-Heng; Dhingra, Sourabh Journal of the American Chemical Society, Vol. 135, Issue 12 https://doi.org/10.1021/ja312503y	journal	March 2013
A Gene Cluster Containing Two Fungal Polyketide Synthases Encodes the Biosynthetic Pathway for a Polyketide, Asperfuranone, in Aspergillus nidulans Chiang, Yi-Ming; Szewczyk, Edyta; Davidson, Ashley D. Journal of the American Chemical Society, Vol. 131, Issue 8 https://doi.org/10.1021/ja8088185	journal	March 2009
Gene Ontology: tool for the unification of biology Ashburner, Michael; Ball, Catherine A.; Blake, Judith A. Nature Genetics, Vol. 25, Issue 1 https://doi.org/10.1038/75556	journal	May 2000
The genome sequence of the filamentous fungus Neurospora crassa Galagan, James E.; Calvo, Sarah E.; Borkovich, Katherine A. Nature, Vol. 422, Issue 6934 https://doi.org/10.1038/nature01554	journal	April 2003
Genome sequencing and analysis of Aspergillus oryzae Machida, Masayuki; Asai, Kiyoshi; Sano, Motoaki Nature, Vol. 438, Issue 7071 https://doi.org/10.1038/nature04300	journal	December 2005
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus Nierman, William C.; Pain, Arnab; Anderson, Michael J. Nature, Vol. 438, Issue 7071, p. 1151-1156 https://doi.org/10.1038/nature04332	journal	December 2005
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae Galagan, James E.; Calvo, Sarah E.; Cuomo, Christina Nature, Vol. 438, Issue 7071 https://doi.org/10.1038/nature04341	journal	December 2005
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) Martinez, Diego; Berka, Randy M.; Henrissat, Bernard Nature Biotechnology, Vol. 26, Issue 5 https://doi.org/10.1038/nbt1403	journal	May 2008
Minimum Information about a Biosynthetic Gene cluster Medema, Marnix H.; Kottmann, Renzo; Yilmaz, Pelin Nature Chemical Biology, Vol. 11, Issue 9 https://doi.org/10.1038/nchembio.1890	journal	August 2015
Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum Kis-Papo, Tamar; Weig, Alfons R.; Riley, Robert Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms4745	journal	May 2014
Biosynthesis of the mycotoxin tenuazonic acid by a fungal NRPS–PKS hybrid enzyme Yun, Choong-Soo; Motoyama, Takayuki; Osada, Hiroyuki Nature Communications, Vol. 6, Issue 1 https://doi.org/10.1038/ncomms9758	journal	October 2015
Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species Nielsen, Jens Christian; Grijseels, Sietske; Prigent, Sylvain Nature Microbiology, Vol. 2, Issue 6 https://doi.org/10.1038/nmicrobiol.2017.44	journal	April 2017
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri Vesth, Tammi C.; Nybo, Jane L.; Theobald, Sebastian Nature Genetics, Vol. 50, Issue 12 https://doi.org/10.1038/s41588-018-0246-1	journal	October 2018
Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication Theobald, Sebastian; Vesth, Tammi C.; Rendsvig, Jakob Kræmmer Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-36561-3	journal	December 2018
Glycosidases induced in Aspergillus tamarii. Mycelial α-d-galactosidases Civas, A.; Eberhard, R.; Le Dizet, P. Biochemical Journal, Vol. 219, Issue 3 https://doi.org/10.1042/bj2190849	journal	May 1984
Accurate prediction of secondary metabolite gene clusters in filamentous fungi Andersen, M. R.; Nielsen, J. B.; Klitgaard, A. Proceedings of the National Academy of Sciences, Vol. 110, Issue 1 https://doi.org/10.1073/pnas.1205532110	journal	December 2012
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species Kjærbølling, Inge; Vesth, Tammi C.; Frisvad, Jens C. Proceedings of the National Academy of Sciences, Vol. 115, Issue 4 https://doi.org/10.1073/pnas.1715954115	journal	January 2018
Dna Relatedness Among Wild and Domesticated Species in the Aspergillus Flavus Group Kurtzman, C. P.; Smiley, M. J.; Robnett, C. J. Mycologia, Vol. 78, Issue 6 https://doi.org/10.1080/00275514.1986.12025355	journal	November 1986
Development of enzyme technology for Aspergillus oryzae, A. sojae, and A. luchuensis , the national microorganisms of Japan Ichishima, Eiji Bioscience, Biotechnology, and Biochemistry, Vol. 80, Issue 9 https://doi.org/10.1080/09168451.2016.1177445	journal	February 2016
APE: Analyses of Phylogenetics and Evolution in R language Paradis, E.; Claude, J.; Strimmer, K. Bioinformatics, Vol. 20, Issue 2 https://doi.org/10.1093/bioinformatics/btg412	journal	January 2004
Easyfig: a genome comparison visualizer Sullivan, M. J.; Petty, N. K.; Beatson, S. A. Bioinformatics, Vol. 27, Issue 7 https://doi.org/10.1093/bioinformatics/btr039	journal	January 2011
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Stamatakis, Alexandros Bioinformatics, Vol. 30, Issue 9 https://doi.org/10.1093/bioinformatics/btu033	journal	January 2014
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs Simão, Felipe A.; Waterhouse, Robert M.; Ioannidis, Panagiotis Bioinformatics, Vol. 31, Issue 19 https://doi.org/10.1093/bioinformatics/btv351	journal	June 2015
karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data Gel, Bernat; Serra, Eduard Bioinformatics, Vol. 33, Issue 19 https://doi.org/10.1093/bioinformatics/btx346	journal	May 2017
Genomics of Aspergillus oryzae: Learning from the History of Koji Mold and Exploration of Its Future Machida, M.; Yamada, O.; Gomi, K. DNA Research, Vol. 15, Issue 4 https://doi.org/10.1093/dnares/dsn020	journal	May 2008
Draft Genome Sequencing and Comparative Analysis of Aspergillus sojae NBRC4239 Sato, A.; Oshima, K.; Noguchi, H. DNA Research, Vol. 18, Issue 3 https://doi.org/10.1093/dnares/dsr009	journal	June 2011
Draft Genome Sequence of an Aflatoxigenic Aspergillus Species, A. bombycis Moore, Geromy G.; Mack, Brian M.; Beltz, Shannon B. Genome Biology and Evolution, Vol. 8, Issue 11 https://doi.org/10.1093/gbe/evw238	journal	September 2016
MUSCLE: multiple sequence alignment with high accuracy and high throughput Edgar, R. C. Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797 https://doi.org/10.1093/nar/gkh340	journal	March 2004
CVTree: a phylogenetic tree reconstruction tool based on whole genomes Qi, J.; Luo, H.; Hao, B. Nucleic Acids Research, Vol. 32, Issue Web Server https://doi.org/10.1093/nar/gkh362	journal	July 2004
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics Cantarel, B. L.; Coutinho, P. M.; Rancurel, C. Nucleic Acids Research, Vol. 37, Issue Database https://doi.org/10.1093/nar/gkn663	journal	January 2009
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources Arnaud, M. B.; Cerqueira, G. C.; Inglis, D. O. Nucleic Acids Research, Vol. 40, Issue D1 https://doi.org/10.1093/nar/gkr875	journal	November 2011
The carbohydrate-active enzymes database (CAZy) in 2013 Lombard, Vincent; Golaconda Ramulu, Hemalatha; Drula, Elodie Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1178	journal	November 2013
MycoCosm portal: gearing up for 1000 fungal genomes Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1183	journal	December 2013
InterPro in 2017—beyond protein family and domain annotations Finn, Robert D.; Attwood, Teresa K.; Babbitt, Patricia C. Nucleic Acids Research, Vol. 45, Issue D1 https://doi.org/10.1093/nar/gkw1107	journal	November 2016
Expansion of the Gene Ontology knowledgebase and resources Consortium, Gene Ontology Nucleic Acids Research, Vol. 45, Issue D1, p. D331-D338 https://doi.org/10.1093/nar/gkw1108	journal	November 2016
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis Castresana, J. Molecular Biology and Evolution, Vol. 17, Issue 4 https://doi.org/10.1093/oxfordjournals.molbev.a026334	journal	April 2000
Aspergillus flavus: human pathogen, allergen and mycotoxin producer Hedayati, M. T.; Pasqualotto, A. C.; Warn, P. A. Microbiology, Vol. 153, Issue 6 https://doi.org/10.1099/mic.0.2007/007641-0	journal	June 2007
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88 Andersen, M. R.; Salazar, M. P.; Schaap, P. J. Genome Research, Vol. 21, Issue 6, p. 885-897 https://doi.org/10.1101/gr.112169.110	journal	May 2011
Aspergillus flavus: the major producer of aflatoxin Klich, Maren A. Molecular Plant Pathology, Vol. 8, Issue 6 https://doi.org/10.1111/j.1364-3703.2007.00436.x	journal	November 2007
Aspergillus flavus : an emerging non- fumigatus Aspergillus species of significance Krishnan, Suganthini; Manavathu, Elias K.; Chandrasekar, Pranatharthi H. Mycoses, Vol. 52, Issue 3 https://doi.org/10.1111/j.1439-0507.2008.01642.x	journal	May 2009
Production of xylanolytic enzymes by Aspergillus tamarii in solid state fermentation Ferreira, GisÃ©lia; Boer, Cinthia G.; Peralta, Rosane M. FEMS Microbiology Letters, Vol. 173, Issue 2 https://doi.org/10.1111/j.1574-6968.1999.tb13522.x	journal	April 1999
Horizontal gene transfer in fungi Fitzpatrick, David A. FEMS Microbiology Letters, Vol. 329, Issue 1 https://doi.org/10.1111/j.1574-6968.2011.02465.x	journal	December 2011
Structural Dynamics of Eukaryotic Chromosome Evolution Eichler, E. E. Science, Vol. 301, Issue 5634 https://doi.org/10.1126/science.1086132	journal	August 2003
Identification of Two Aflatrem Biosynthesis Gene Loci in Aspergillus flavus and Metabolic Engineering of Penicillium paxilli To Elucidate Their Function Nicholson, M. J.; Koulman, A.; Monahan, B. J. Applied and Environmental Microbiology, Vol. 75, Issue 23 https://doi.org/10.1128/AEM.02146-08	journal	October 2009
Genome-Based Cluster Deletion Reveals an Endocrocin Biosynthetic Pathway in Aspergillus fumigatus Lim, Fang Yun; Hou, Yanpeng; Chen, Yiming Applied and Environmental Microbiology, Vol. 78, Issue 12 https://doi.org/10.1128/AEM.07710-11	journal	April 2012
Differentiation of Aspergillus parasiticus from Aspergillus sojae by random amplification of polymorphic DNA. Yuan, G. F.; Liu, C. S.; Chen, C. C. Applied and environmental microbiology, Vol. 61, Issue 6 https://doi.org/10.1128/AEM.61.6.2384-2387.1995	journal	January 1995
A New Black Aspergillus Species, A. vadensis, Is a Promising Host for Homologous and Heterologous Protein Production de Vries, R. P.; Burgers, K.; van de Vondervoort, P. J. I. Applied and Environmental Microbiology, Vol. 70, Issue 7 https://doi.org/10.1128/AEM.70.7.3954-3959.2004	journal	July 2004
Transcriptome Analysis of Aspergillus flavus Reveals veA -Dependent Regulation of Secondary Metabolite Gene Clusters, Including the Novel Aflavarin Cluster Cary, J. W.; Han, Z.; Yin, Y. Eukaryotic Cell, Vol. 14, Issue 10 https://doi.org/10.1128/EC.00092-15	journal	July 2015
Aspergillus parasiticus SU-1 Genome Sequence, Predicted Chromosome Structure, and Comparative Gene Expression under Aflatoxin-Inducing Conditions: Evidence that Differential Expression Contributes to Species Phenotype Linz, John E.; Wee, Josephine; Roze, Ludmila V. Eukaryotic Cell, Vol. 13, Issue 8 https://doi.org/10.1128/EC.00108-14	journal	June 2014
The COG database: an updated version includes eukaryotes Tatusov, Roman L.; Fedorova, Natalie D.; Jackson, John D. BMC Bioinformatics, Vol. 4, Article No. 41 https://doi.org/10.1186/1471-2105-4-41	journal	January 2003
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus Marcet-Houben, Marina; Ballester, Ana-Rosa; de la Fuente, Beatriz BMC Genomics, Vol. 13, Issue 1 https://doi.org/10.1186/1471-2164-13-646	journal	January 2012
Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse de Souza, Wagner R.; de Gouvea, Paula F.; Savoldi, Marcela Biotechnology for Biofuels, Vol. 4, Issue 1 https://doi.org/10.1186/1754-6834-4-40	journal	January 2011
Genomic sequence of the aflatoxigenic filamentous fungus Aspergillus nomius Moore, Geromy G.; Mack, Brian M.; Beltz, Shannon B. BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1719-6	journal	July 2015
Genome sequence of an aflatoxigenic pathogen of Argentinian peanut, Aspergillus arachidicola Moore, Geromy G.; Mack, Brian M.; Beltz, Shannon B. BMC Genomics, Vol. 19, Issue 1 https://doi.org/10.1186/s12864-018-4576-2	journal	March 2018
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus de Vries, Ronald P.; Riley, Robert; Wiebenga, Ad Genome Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s13059-017-1151-0	journal	February 2017
Closely related fungi employ diverse enzymatic strategies to degrade plant biomass Benoit, Isabelle; Culleton, Helena; Zhou, Miaomiao Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-015-0285-0	journal	August 2015
Characterization of thermophilic fungi producing extracellular lignocellulolytic enzymes for lignocellulosic hydrolysis under solid-state fermentation Saroj, Paramjeet; P., Manasa; Narasimhulu, Korrapati Bioresources and Bioprocessing, Vol. 5, Issue 1 https://doi.org/10.1186/s40643-018-0216-6	journal	July 2018
Effective Use of Heterologous Hosts for Characterization of Biosynthetic Enzymes Allows Production of Natural Products and Promotes New Natural Product Discovery Watanabe, Kenji Chemical and Pharmaceutical Bulletin, Vol. 62, Issue 12 https://doi.org/10.1248/cpb.c14-00471	journal	January 2014
Genomics of Aspergillus oryzae Kobayashi, Tetsuo; Abe, Keietsu; Asai, Kiyoshi Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 3 https://doi.org/10.1271/bbb.60550	journal	March 2007
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus Fedorova, Natalie D.; Khaldi, Nora; Joardar, Vinita S. PLoS Genetics, Vol. 4, Issue 4, Article No. e1000046 https://doi.org/10.1371/journal.pgen.1000046	journal	April 2008
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts Druzhinina, Irina S.; Chenthamara, Komal; Zhang, Jian PLOS Genetics, Vol. 14, Issue 4 https://doi.org/10.1371/journal.pgen.1007322	journal	April 2018
Low-Volume Toolbox for the Discovery of Immunosuppressive Fungal Secondary Metabolites Berthier, Erwin; Lim, Fang Yun; Deng, Qing PLoS Pathogens, Vol. 9, Issue 4 https://doi.org/10.1371/journal.ppat.1003289	journal	April 2013
New and revisited species in Aspergillus section Nigri Varga, J.; Frisvad, J. C.; Kocsubé, S. Studies in Mycology, Vol. 69 https://doi.org/10.3114/sim.2011.69.01	journal	June 2011
Two new aflatoxin producing species, and an overview of Aspergillus section Flavi Varga, J.; Frisvad, J. C.; Samson, R. A. Studies in Mycology, Vol. 69 https://doi.org/10.3114/sim.2011.69.05	journal	June 2011
Cyclopiazonic Acid Biosynthesis of Aspergillus flavus and Aspergillus oryzae Chang, Perng-Kuang; Ehrlich, Kenneth; Fujii, Isao Toxins, Vol. 1, Issue 2 https://doi.org/10.3390/toxins1020074	journal	November 2009
Aspergillus flavus and Aspergillus parasiticus: Aflatoxigenic Fungi of Concern in Foods and Feeds†: A Review Gourama, Hassan; Bullerman, Lloyd B. Journal of Food Protection, Vol. 58, Issue 12 https://doi.org/10.4315/0362-028X-58.12.1395	journal	December 1995
Production of Xylanolytic Enzyme Complex from Aspergillus flavus using Agricultural Wastes Kim, Jeong-Dong Mycobiology, Vol. 33, Issue 2 https://doi.org/10.4489/MYCO.2005.33.2.084	journal	January 2005
New Antibiotics Miyakamides Produced by a Fungus. Shiomi, Kazuro; Hatae, Kenji; Yamaguchi, Yuichi The Journal of Antibiotics, Vol. 55, Issue 11 https://doi.org/10.7164/antibiotics.55.952	journal	January 2002

Similar Records

Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti

Journal Article · 2025 · Studies in Mycology · OSTI ID:3003980

Nybo, Jane L.; Vesth, Tammi C.; Theobald, Sebastian; +34 more

Comparative genomics of Aspergillus nidulans and section Nidulantes

Journal Article · 2025 · Current Research in Microbial Sciences · OSTI ID:2514371

Theobald, Sebastian; Vesth, Tammi C.; Nybo, Jane; +34 more

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Journal Article · 2018 · Nature Genetics · OSTI ID:1492689

Vesth, Tammi C.; Nybo, Jane L.; Theobald, Sebastian; +36 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Aspergillus
CAZyme
Comparative Genomics
Secondary Metabolism aflatoxin
Section Flavi
applied microbiology
fungal genomics
industrial microbiology
miyakamide
small molecules

Title: A comparative genomics study of 23 Aspergillus species from section Flavi

Citation Formats

References (91)

Similar Records

Related Subjects