Title: Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents

Journal Article · · Nature Communications

Not Available

Research Organization:
Univ. of California, Irvine, CA (United States)
Sponsoring Organization:
National Science Foundation (NSF); USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Grant/Contract Number:
SC0016410
OSTI ID:
1619521
Journal Information:
Nature Communications, Journal Name: Nature Communications Journal Issue: 1 Vol. 10; ISSN 2041-1723
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (44)

Comparative Genomics of Nitrogen Cycling Pathways in Bacteria and Archaea journal August 2018
Differential responses of soil bacterial taxa to long-term P, N, and organic manure application journal December 2015
Lateral genomics journal December 1999
Influence of 34-years of fertilization on bacterial communities in an intensively cultivated black soil in northeast China journal November 2015
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients journal December 2011
Phylogenetic conservatism of functional traits in microorganisms journal December 2012
Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes journal January 2013
Microbial response to simulated global change is phylogenetically conserved and linked with functional potential journal June 2015
Phylogenetic organization of bacterial activity journal March 2016
Global nitrogen deposition and carbon sinks journal June 2008
UPARSE: highly accurate OTU sequences from microbial amplicon reads journal August 2013
QIIME allows analysis of high-throughput community sequencing data journal April 2010
Effect of different levels of nitrogen on rhizosphere bacterial community structure in intensive monoculture of greenhouse lettuce journal April 2016
Nitrogen deposition and management practices increase soil microbial biomass carbon but decrease diversity in Moso bamboo plantations journal June 2016
Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests journal September 2016
Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy Grail journal October 2002
Resistance, resilience, and redundancy in microbial communities journal August 2008
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups journal June 2012
Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe journal August 2015
phangorn: phylogenetic analysis in R journal December 2010
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies journal January 2014
Spatial scale drives patterns in soil bacterial diversity: Spatial scale drives soil diversity journal March 2016
Bacterial, fungal, and plant communities exhibit no biomass or compositional response to two years of simulated nitrogen deposition in a semiarid grassland: Bacterial, fungal, and plant communities journal March 2017
Taxonomic patterns in the nitrogen assimilation of soil prokaryotes: Nitrogen assimilation of soil prokaryotes journal March 2018
Keystone taxa predict compositional change in microbial communities journal June 2018
Climate change alters ecological strategies of soil bacteria journal November 2013
Scaling environmental change through the community-level: a trait-based response-and-effect framework for plants journal May 2008
Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes journal February 2012
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling journal November 2008
Selectivity in Mammalian Extinction Risk and Threat Types: a New Measure of Phylogenetic Signal Strength in Binary Traits: Selectivity in Extinction Risk journal February 2010
Assessing Phylogenetic Signal with Measurement Error: a Comparison of Mantel Tests, Blomberg et Al.'S k, and Phylogenetic Distograms journal April 2012
Microbiomes in light of traits: A phylogenetic perspective journal November 2015
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy journal June 2007
Towards a Genome-Based Taxonomy for Prokaryotes journal September 2005
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 journal December 2014
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data journal April 2013
The Nitrogen Cascade journal January 2003
Global assessment of nitrogen deposition effects on terrestrial plant diversity: a synthesis journal January 2010
Microbial abundance and composition influence litter decomposition response to environmental change journal March 2013
Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R journal January 2016
Fundamentals of Microbial Community Resistance and Resilience journal January 2012
Soil microbial community structure is unaltered by plant invasion, vegetation clipping, and nitrogen fertilization in experimental semi-arid grasslands journal May 2015
The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities journal January 2019
Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets journal January 2017