Fungi in the Canopy: How Soil Fungi and Extracellular Enzymes Differ Between Canopy and Ground Soils
Abstract
Abstract Tropical montane cloud forests contain a large abundance and diversity of canopy epiphytes, which depend on canopy soil to retain water and nutrients. We lack an in depth understanding of how these soils contribute to ecosystem processes and soil diversity and how sensitive they may be to projected climate change. We compared canopy and ground soils in Monteverde, Costa Rica, to determine how these two soil types differ in their extracellular enzyme activity (EEA) and fungal communities. Samples were also collected along two elevation gradients to reveal if canopy soils differed in how EEA and fungal communities responded to elevation compared to ground soils. We found that canopy soils had higher EEA than ground soils. Fungal communities were less diverse and differed significantly between the two soil types. These differences were associated with higher relative abundances of yeasts and endophytes in canopy soils. The relative abundances of free-living filamentous fungi and yeasts shifted more dramatically with elevation in canopy soils compared to ground soils. Our study suggests that canopy soils may be a reservoir for endophytes. Epiphytes may invest in symbionts that promote stress tolerance over mycorrhizal fungi whose high resource demands are costly and less beneficial. Overall, soilsmore »
- Authors:
- Publication Date:
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1619440
- Grant/Contract Number:
- SC0016410
- Resource Type:
- Published Article
- Journal Name:
- Ecosystems
- Additional Journal Information:
- Journal Name: Ecosystems Journal Volume: 23 Journal Issue: 4; Journal ID: ISSN 1432-9840
- Publisher:
- Springer Science + Business Media
- Country of Publication:
- United States
- Language:
- English
Citation Formats
Looby, Caitlin I., Hollenbeck, Emily C., and Treseder, Kathleen K. Fungi in the Canopy: How Soil Fungi and Extracellular Enzymes Differ Between Canopy and Ground Soils. United States: N. p., 2019.
Web. doi:10.1007/s10021-019-00439-w.
Looby, Caitlin I., Hollenbeck, Emily C., & Treseder, Kathleen K. Fungi in the Canopy: How Soil Fungi and Extracellular Enzymes Differ Between Canopy and Ground Soils. United States. https://doi.org/10.1007/s10021-019-00439-w
Looby, Caitlin I., Hollenbeck, Emily C., and Treseder, Kathleen K. Mon .
"Fungi in the Canopy: How Soil Fungi and Extracellular Enzymes Differ Between Canopy and Ground Soils". United States. https://doi.org/10.1007/s10021-019-00439-w.
@article{osti_1619440,
title = {Fungi in the Canopy: How Soil Fungi and Extracellular Enzymes Differ Between Canopy and Ground Soils},
author = {Looby, Caitlin I. and Hollenbeck, Emily C. and Treseder, Kathleen K.},
abstractNote = {Abstract Tropical montane cloud forests contain a large abundance and diversity of canopy epiphytes, which depend on canopy soil to retain water and nutrients. We lack an in depth understanding of how these soils contribute to ecosystem processes and soil diversity and how sensitive they may be to projected climate change. We compared canopy and ground soils in Monteverde, Costa Rica, to determine how these two soil types differ in their extracellular enzyme activity (EEA) and fungal communities. Samples were also collected along two elevation gradients to reveal if canopy soils differed in how EEA and fungal communities responded to elevation compared to ground soils. We found that canopy soils had higher EEA than ground soils. Fungal communities were less diverse and differed significantly between the two soil types. These differences were associated with higher relative abundances of yeasts and endophytes in canopy soils. The relative abundances of free-living filamentous fungi and yeasts shifted more dramatically with elevation in canopy soils compared to ground soils. Our study suggests that canopy soils may be a reservoir for endophytes. Epiphytes may invest in symbionts that promote stress tolerance over mycorrhizal fungi whose high resource demands are costly and less beneficial. Overall, soils harbor distinct fungal communities that may be altered under projected climate change.},
doi = {10.1007/s10021-019-00439-w},
journal = {Ecosystems},
number = 4,
volume = 23,
place = {United States},
year = {2019},
month = {9}
}
https://doi.org/10.1007/s10021-019-00439-w
Works referenced in this record:
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
journal, April 2016
- Nguyen, Nhu H.; Song, Zewei; Bates, Scott T.
- Fungal Ecology, Vol. 20
Piracy in the high trees: ectomycorrhizal fungi from an aerial ‘canopy soil’ microhabitat
journal, January 2013
- Orlovich, David A.; Draffin, Suzy J.; Daly, Robert A.
- Mycologia, Vol. 105, Issue 1
Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions
journal, March 2012
- Schneider, Thomas; Keiblinger, Katharina M.; Schmid, Emanuel
- The ISME Journal, Vol. 6, Issue 9
Community and Ecosystem Responses to Elevational Gradients: Processes, Mechanisms, and Insights for Global Change
journal, November 2013
- Sundqvist, Maja K.; Sanders, Nathan J.; Wardle, David A.
- Annual Review of Ecology, Evolution, and Systematics, Vol. 44, Issue 1
Fungal community responses to precipitation: FUNGAL CLIMATE RESPONSE
journal, October 2010
- Hawkes, Christine V.; Kivlin, Stephanie N.; Rocca, Jennifer D.
- Global Change Biology, Vol. 17, Issue 4
Functional diversity in resource use by fungi
journal, August 2010
- McGuire, Krista L.; Bent, Elizabeth; Borneman, James
- Ecology, Vol. 91, Issue 8
Fungal Community Composition in Neotropical Rain Forests: the Influence of Tree Diversity and Precipitation
journal, November 2011
- McGuire, Krista L.; Fierer, Noah; Bateman, Carling
- Microbial Ecology, Vol. 63, Issue 4
Microhabitat associations of vascular epiphytes in a wet tropical forest canopy
journal, January 2015
- Woods, Carrie L.; Cardelús, Catherine L.; DeWalt, Saara J.
- Journal of Ecology, Vol. 103, Issue 2
Stress tolerance in plants via habitat-adapted symbiosis
journal, February 2008
- Rodriguez, Rusty J.; Henson, Joan; Van Volkenburgh, Elizabeth
- The ISME Journal, Vol. 2, Issue 4
Canopy soil bacterial communities altered by severing host tree limbs
journal, January 2017
- Dangerfield, Cody R.; Nadkarni, Nalini M.; Brazelton, William J.
- PeerJ, Vol. 5
Fungal Taxa Target Different Carbon Sources in Forest Soil
journal, September 2008
- Hanson, China A.; Allison, Steven D.; Bradford, Mark A.
- Ecosystems, Vol. 11, Issue 7
Microbial activities and foliar uptake of nitrogen in the epiphytic bromeliad Vriesea gigantea
journal, July 2007
- Inselsbacher, Erich; Cambui, Camila Aguetoni; Richter, Andreas
- New Phytologist, Vol. 175, Issue 2
Decomposition rate of organic substrates in relation to the species diversity of soil saprophytic fungi
journal, January 2004
- Setälä, Heikki; McLean, Mary Ann
- Oecologia, Vol. 139, Issue 1
Biomass and nutrient pools of canopy and terrestrial components in a primary and a secondary montane cloud forest, Costa Rica
journal, August 2004
- Nadkarni, Nalini M.; Schaefer, Douglas; Matelson, Teri J.
- Forest Ecology and Management, Vol. 198, Issue 1-3
Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies
journal, July 2011
- German, Donovan P.; Weintraub, Michael N.; Grandy, A. Stuart
- Soil Biology and Biochemistry, Vol. 43, Issue 7
Historical and current climate drive spatial and temporal patterns in fungal endophyte diversity
journal, April 2016
- Giauque, Hannah; Hawkes, Christine V.
- Fungal Ecology, Vol. 20
Mycorrhizal, Endophytic and Ecomorphological Status of Tree Roots in the Canopy of a Montane Rain Forest: Mycorrhizal Status of Tree Fine Roots in the Canopy
journal, July 2011
- Hertel, Dietrich; Köhler, Lars; Rillig, Matthias C.
- Biotropica, Vol. 43, Issue 4
Organic osmolytes as compatible, metabolic and counteracting cytoprotectants in high osmolarity and other stresses
journal, August 2005
- Yancey, P. H.
- Journal of Experimental Biology, Vol. 208, Issue 15
Microbial communities of arboreal and ground soils in the Esquinas rainforest, Costa Rica
journal, August 2009
- Pittl, Elisabeth; Innerebner, Gerd; Wanek, Wolfgang
- Plant and Soil, Vol. 329, Issue 1-2
Stoichiometry of soil enzyme activity at global scale: Stoichiometry of soil enzyme activity
journal, September 2008
- Sinsabaugh, Robert L.; Lauber, Christian L.; Weintraub, Michael N.
- Ecology Letters, Vol. 11, Issue 11
Inner-crown Microenvironments of Two Emergent Tree Species in a Lowland Wet Forest1
journal, June 2005
- Cardelus, Catherine L.; Chazdon, Robin L.
- Biotropica, Vol. 37, Issue 2
Epiphyte Biomass and Nutrient Capital of a Neotropical Elfin Forest
journal, December 1984
- Nadkarni, Nalini M.
- Biotropica, Vol. 16, Issue 4
Litter Decomposition Within the Canopy and Forest Floor of Three Tree Species in a Tropical Lowland Rain forest, Costa Rica: Canopy and Forest Floor Decomposition
journal, November 2009
- Cardelús, Catherine L.
- Biotropica, Vol. 42, Issue 3
Comparison of arboreal and terrestrial soil characteristics in a lower montane forest, Monteverde, Costa Rica
journal, January 2002
- Nadkarni, Nalini M.; Schaefer, Douglas; Matelson, Teri J.
- Pedobiologia, Vol. 46, Issue 1
Environmental filtering affects soil fungal community composition more than dispersal limitation at regional scales
journal, December 2014
- Kivlin, Stephanie N.; Winston, Greg C.; Goulden, Michael L.
- Fungal Ecology, Vol. 12
Living in a fungal world: impact of fungi on soil bacterial niche development
journal, September 2005
- Boer, Wietse de; Folman, Larissa B.; Summerbell, Richard C.
- FEMS Microbiology Reviews, Vol. 29, Issue 4
Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus
journal, February 2016
- Garnica, Sigisfredo; Schön, Max Emil; Abarenkov, Kessy
- FEMS Microbiology Ecology, Vol. 92, Issue 4
Nitrogen-15 natural abundance in a montane cloud forest canopy as an indicator of nitrogen cycling and epiphyte nutrition
journal, May 2002
- Hietz, Peter; Wanek, Wolfgang; Wania, Rita
- Oecologia, Vol. 131, Issue 3
Belowground responses to elevation in a changing cloud forest
journal, February 2016
- Looby, Caitlin I.; Maltz, Mia R.; Treseder, Kathleen K.
- Ecology and Evolution, Vol. 6, Issue 7
Growth measurements of saprotrophic fungi and bacteria reveal differences between canopy and forest floor soils
journal, April 2009
- Rousk, Johannes; Nadkarni, Nalini M.
- Soil Biology and Biochemistry, Vol. 41, Issue 4
Contribution of Nontrees to Species Richness of a Tropical Rain Forest
journal, June 1987
- Gentry, Alwyn H.; Dodson, Calaway
- Biotropica, Vol. 19, Issue 2
Moisture and Temperature Patterns of Canopy Humus and Forest Floor Soil of a Montane Cloud Forest, Costa Rica
journal, March 1995
- Bohlman, Stephanie A.; Matelson, Teri J.; Nadkarni, Nalini M.
- Biotropica, Vol. 27, Issue 1
Variation in the resilience of cloud forest vascular epiphytes to severe drought
journal, October 2017
- Gotsch, Sybil G.; Dawson, Todd E.; Draguljić, Danel
- New Phytologist, Vol. 219, Issue 3
Cellular responses of microcolonial rock fungi to long-term desiccation and subsequent rehydration
journal, January 2008
- Gorbushina, A. A.; Kotlova, E. R.; Sherstneva, O. A.
- Studies in Mycology, Vol. 61
Vesicular-arbuscular mycorrhizae of epiphytic and terrestrial Piperaceae under field and greenhouse conditions
journal, October 1993
- Maffia, Blase; Nadkarni, Nalini M.; Janos, David P.
- Mycorrhiza, Vol. 4, Issue 1
Microbial biomass and activity in canopy organic matter and the forest floor of a tropical cloud forest
journal, January 1990
- Vance, E. D.; Nadkarni, N. M.
- Soil Biology and Biochemistry, Vol. 22, Issue 5
Warming and drying suppress microbial activity and carbon cycling in boreal forest soils
journal, December 2008
- Allison, Steven D.; Treseder, Kathleen K.
- Global Change Biology, Vol. 14, Issue 12
Climate affects symbiotic fungal endophyte diversity and performance
journal, July 2013
- Giauque, Hannah; Hawkes, Christine V.
- American Journal of Botany, Vol. 100, Issue 7
Climate change in Central America and Mexico: regional climate model validation and climate change projections
journal, May 2011
- Karmalkar, Ambarish V.; Bradley, Raymond S.; Diaz, Henry F.
- Climate Dynamics, Vol. 37, Issue 3-4
Multi‐element regulation of the tropical forest carbon cycle
journal, February 2011
- Townsend, Alan R.; Cleveland, Cory C.; Houlton, Benjamin Z.
- Frontiers in Ecology and the Environment, Vol. 9, Issue 1
Widespread amphibian extinctions from epidemic disease driven by global warming
journal, January 2006
- Alan Pounds, J.; Bustamante, Martín R.; Coloma, Luis A.
- Nature, Vol. 439, Issue 7073
Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape
journal, July 2012
- Zimmerman, N. B.; Vitousek, P. M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 32
Patterns of moisture and temperature in canopy and terrestrial soils in a temperate rainforest, Washington
journal, November 2013
- Aubrey, Dennis A.; Nadkarni, Nalini M.; Broderick, Casey P.
- Botany, Vol. 91, Issue 11
Biological response to climate change on a tropical mountain
journal, April 1999
- Pounds, J. Alan; Fogden, Michael P. L.; Campbell, John H.
- Nature, Vol. 398, Issue 6728
Simulating the effects of climate change on tropical montane cloud forests
journal, April 1999
- Still, Christopher J.; Foster, Prudence N.; Schneider, Stephen H.
- Nature, Vol. 398, Issue 6728
The functional roles of epiphytes and arboreal soils in tropical montane cloud forests
journal, July 2016
- Gotsch, Sybil G.; Nadkarni, Nalini; Amici, Autumn
- Journal of Tropical Ecology, Vol. 32, Issue 5
Fungal Traits That Drive Ecosystem Dynamics on Land
journal, May 2015
- Treseder, Kathleen K.; Lennon, Jay T.
- Microbiology and Molecular Biology Reviews, Vol. 79, Issue 2
Impact of land use on Costa Rican tropical montane cloud forests: Sensitivity of cumulus cloud field characteristics to lowland deforestation
journal, January 2003
- Nair, U. S.
- Journal of Geophysical Research, Vol. 108, Issue D7
Epiphytic and terrestrial mycorrhizas in a lower montane Costa Rican cloud forest
journal, October 2003
- Rains, Kai Coshow; Nadkarni, Nalini M.; Bledsoe, Caroline S.
- Mycorrhiza, Vol. 13, Issue 5
Macroecological patterns in soil communities: Soil community macroecology
journal, February 2010
- Decaëns, Thibaud
- Global Ecology and Biogeography, Vol. 19, Issue 3
The incidence and implications of clouds for cloud forest plant water relations
journal, December 2012
- Goldsmith, Gregory R.; Matzke, Nicholas J.; Dawson, Todd E.
- Ecology Letters, Vol. 16, Issue 3
A new currency for mutualism? Fungal endophytes alter antioxidant activity in hosts responding to drought
journal, February 2012
- Hamilton, Cyd E.; Bauerle, Taryn L.
- Fungal Diversity, Vol. 54, Issue 1