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Title: Fungi in the Canopy: How Soil Fungi and Extracellular Enzymes Differ Between Canopy and Ground Soils

Journal Article · · Ecosystems

Abstract Tropical montane cloud forests contain a large abundance and diversity of canopy epiphytes, which depend on canopy soil to retain water and nutrients. We lack an in depth understanding of how these soils contribute to ecosystem processes and soil diversity and how sensitive they may be to projected climate change. We compared canopy and ground soils in Monteverde, Costa Rica, to determine how these two soil types differ in their extracellular enzyme activity (EEA) and fungal communities. Samples were also collected along two elevation gradients to reveal if canopy soils differed in how EEA and fungal communities responded to elevation compared to ground soils. We found that canopy soils had higher EEA than ground soils. Fungal communities were less diverse and differed significantly between the two soil types. These differences were associated with higher relative abundances of yeasts and endophytes in canopy soils. The relative abundances of free-living filamentous fungi and yeasts shifted more dramatically with elevation in canopy soils compared to ground soils. Our study suggests that canopy soils may be a reservoir for endophytes. Epiphytes may invest in symbionts that promote stress tolerance over mycorrhizal fungi whose high resource demands are costly and less beneficial. Overall, soils harbor distinct fungal communities that may be altered under projected climate change.

Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
SC0016410
OSTI ID:
1619440
Journal Information:
Ecosystems, Journal Name: Ecosystems Vol. 23 Journal Issue: 4; ISSN 1432-9840
Publisher:
Springer Science + Business MediaCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 10 works
Citation information provided by
Web of Science

References (52)

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild journal April 2016
Piracy in the high trees: ectomycorrhizal fungi from an aerial ‘canopy soil’ microhabitat journal January 2013
Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions journal March 2012
Community and Ecosystem Responses to Elevational Gradients: Processes, Mechanisms, and Insights for Global Change journal November 2013
Fungal community responses to precipitation: FUNGAL CLIMATE RESPONSE journal October 2010
Functional diversity in resource use by fungi journal August 2010
Fungal Community Composition in Neotropical Rain Forests: the Influence of Tree Diversity and Precipitation journal November 2011
Microhabitat associations of vascular epiphytes in a wet tropical forest canopy journal January 2015
Stress tolerance in plants via habitat-adapted symbiosis journal February 2008
Canopy soil bacterial communities altered by severing host tree limbs journal January 2017
Fungal Taxa Target Different Carbon Sources in Forest Soil journal September 2008
Microbial activities and foliar uptake of nitrogen in the epiphytic bromeliad Vriesea gigantea journal July 2007
Decomposition rate of organic substrates in relation to the species diversity of soil saprophytic fungi journal January 2004
Biomass and nutrient pools of canopy and terrestrial components in a primary and a secondary montane cloud forest, Costa Rica journal August 2004
Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies journal July 2011
Historical and current climate drive spatial and temporal patterns in fungal endophyte diversity journal April 2016
Mycorrhizal, Endophytic and Ecomorphological Status of Tree Roots in the Canopy of a Montane Rain Forest: Mycorrhizal Status of Tree Fine Roots in the Canopy journal July 2011
Organic osmolytes as compatible, metabolic and counteracting cytoprotectants in high osmolarity and other stresses journal August 2005
Microbial communities of arboreal and ground soils in the Esquinas rainforest, Costa Rica journal August 2009
Stoichiometry of soil enzyme activity at global scale: Stoichiometry of soil enzyme activity journal September 2008
Inner-crown Microenvironments of Two Emergent Tree Species in a Lowland Wet Forest1 journal June 2005
Epiphyte Biomass and Nutrient Capital of a Neotropical Elfin Forest journal December 1984
Litter Decomposition Within the Canopy and Forest Floor of Three Tree Species in a Tropical Lowland Rain forest, Costa Rica: Canopy and Forest Floor Decomposition journal November 2009
Comparison of arboreal and terrestrial soil characteristics in a lower montane forest, Monteverde, Costa Rica journal January 2002
Environmental filtering affects soil fungal community composition more than dispersal limitation at regional scales journal December 2014
Living in a fungal world: impact of fungi on soil bacterial niche development journal September 2005
Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus journal February 2016
Nitrogen-15 natural abundance in a montane cloud forest canopy as an indicator of nitrogen cycling and epiphyte nutrition journal May 2002
Belowground responses to elevation in a changing cloud forest journal February 2016
Growth measurements of saprotrophic fungi and bacteria reveal differences between canopy and forest floor soils journal April 2009
Contribution of Nontrees to Species Richness of a Tropical Rain Forest journal June 1987
Moisture and Temperature Patterns of Canopy Humus and Forest Floor Soil of a Montane Cloud Forest, Costa Rica journal March 1995
Variation in the resilience of cloud forest vascular epiphytes to severe drought journal October 2017
Cellular responses of microcolonial rock fungi to long-term desiccation and subsequent rehydration journal January 2008
Vesicular-arbuscular mycorrhizae of epiphytic and terrestrial Piperaceae under field and greenhouse conditions journal October 1993
Microbial biomass and activity in canopy organic matter and the forest floor of a tropical cloud forest journal January 1990
Warming and drying suppress microbial activity and carbon cycling in boreal forest soils journal December 2008
Climate affects symbiotic fungal endophyte diversity and performance journal July 2013
Climate change in Central America and Mexico: regional climate model validation and climate change projections journal May 2011
Multi‐element regulation of the tropical forest carbon cycle
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Widespread amphibian extinctions from epidemic disease driven by global warming journal January 2006
Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape journal July 2012
Patterns of moisture and temperature in canopy and terrestrial soils in a temperate rainforest, Washington journal November 2013
Biological response to climate change on a tropical mountain journal April 1999
Simulating the effects of climate change on tropical montane cloud forests journal April 1999
The functional roles of epiphytes and arboreal soils in tropical montane cloud forests journal July 2016
Fungal Traits That Drive Ecosystem Dynamics on Land journal May 2015
Impact of land use on Costa Rican tropical montane cloud forests: Sensitivity of cumulus cloud field characteristics to lowland deforestation journal January 2003
Epiphytic and terrestrial mycorrhizas in a lower montane Costa Rican cloud forest journal October 2003
Macroecological patterns in soil communities: Soil community macroecology journal February 2010
The incidence and implications of clouds for cloud forest plant water relations journal December 2012
A new currency for mutualism? Fungal endophytes alter antioxidant activity in hosts responding to drought journal February 2012