High-throughput screening of environmental polysaccharide-degrading bacteria using biomass containment and complex insoluble substrates
Abstract
Abstract Carbohydrate degradation by microbes plays an important role in global nutrient cycling, human nutrition, and biotechnological applications. Studies that focus on the degradation of complex recalcitrant polysaccharides are challenging because of the insolubility of these substrates as found in their natural contexts. Specifically, current methods to examine carbohydrate-based biomass degradation using bacterial strains or purified enzymes are not compatible with high-throughput screening using complex insoluble materials. In this report, we developed a small 3D printed filter device that fits inside a microplate well that allows for the free movement of bacterial cells, media, and enzymes while containing insoluble biomass. These devices do not interfere with standard microplate readers and can be used for both short- (24–48 h) and long-duration (> 100 h) experiments using complex insoluble substrates. These devices were used to quantitatively screen in a high-throughput manner environmental isolates for their ability to grow using lignocellulose or rice grains as a sole nutrient source. Additionally, we determined that the microplate-based containment devices are compatible with existing enzymatic assays to measure activity against insoluble biomass. Overall, these microplate containment devices provide a platform to study the degradation of complex insoluble materials in a high-throughput manner and have the potential to help uncovermore »
- Authors:
- Publication Date:
- Research Org.:
- Univ. of Maryland Baltimore County (UMBC), Baltimore, MD (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Institutes of Health (NIH)
- OSTI Identifier:
- 1619313
- Alternate Identifier(s):
- OSTI ID: 1602749
- Grant/Contract Number:
- SC0014183
- Resource Type:
- Published Article
- Journal Name:
- Applied Microbiology and Biotechnology
- Additional Journal Information:
- Journal Name: Applied Microbiology and Biotechnology Journal Volume: 104 Journal Issue: 8; Journal ID: ISSN 0175-7598
- Publisher:
- Springer Science + Business Media
- Country of Publication:
- Germany
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 3D printing; Cellvibrio japonicus; Cellulose; Chitin; Lignocellulose; Polysaccharide
Citation Formats
Monge, Estela C., Levi, Marios, Forbin, Joseph N., Legesse, Mussie D., Udo, Basil A., deCarvalho, Tagide N., and Gardner, Jeffrey G. High-throughput screening of environmental polysaccharide-degrading bacteria using biomass containment and complex insoluble substrates. Germany: N. p., 2020.
Web. doi:10.1007/s00253-020-10469-3.
Monge, Estela C., Levi, Marios, Forbin, Joseph N., Legesse, Mussie D., Udo, Basil A., deCarvalho, Tagide N., & Gardner, Jeffrey G. High-throughput screening of environmental polysaccharide-degrading bacteria using biomass containment and complex insoluble substrates. Germany. https://doi.org/10.1007/s00253-020-10469-3
Monge, Estela C., Levi, Marios, Forbin, Joseph N., Legesse, Mussie D., Udo, Basil A., deCarvalho, Tagide N., and Gardner, Jeffrey G. Sat .
"High-throughput screening of environmental polysaccharide-degrading bacteria using biomass containment and complex insoluble substrates". Germany. https://doi.org/10.1007/s00253-020-10469-3.
@article{osti_1619313,
title = {High-throughput screening of environmental polysaccharide-degrading bacteria using biomass containment and complex insoluble substrates},
author = {Monge, Estela C. and Levi, Marios and Forbin, Joseph N. and Legesse, Mussie D. and Udo, Basil A. and deCarvalho, Tagide N. and Gardner, Jeffrey G.},
abstractNote = {Abstract Carbohydrate degradation by microbes plays an important role in global nutrient cycling, human nutrition, and biotechnological applications. Studies that focus on the degradation of complex recalcitrant polysaccharides are challenging because of the insolubility of these substrates as found in their natural contexts. Specifically, current methods to examine carbohydrate-based biomass degradation using bacterial strains or purified enzymes are not compatible with high-throughput screening using complex insoluble materials. In this report, we developed a small 3D printed filter device that fits inside a microplate well that allows for the free movement of bacterial cells, media, and enzymes while containing insoluble biomass. These devices do not interfere with standard microplate readers and can be used for both short- (24–48 h) and long-duration (> 100 h) experiments using complex insoluble substrates. These devices were used to quantitatively screen in a high-throughput manner environmental isolates for their ability to grow using lignocellulose or rice grains as a sole nutrient source. Additionally, we determined that the microplate-based containment devices are compatible with existing enzymatic assays to measure activity against insoluble biomass. Overall, these microplate containment devices provide a platform to study the degradation of complex insoluble materials in a high-throughput manner and have the potential to help uncover ecologically important aspects of bacterial metabolism as well as to accelerate biotechnological innovation.},
doi = {10.1007/s00253-020-10469-3},
journal = {Applied Microbiology and Biotechnology},
number = 8,
volume = 104,
place = {Germany},
year = {Sat Feb 29 00:00:00 EST 2020},
month = {Sat Feb 29 00:00:00 EST 2020}
}
https://doi.org/10.1007/s00253-020-10469-3
Web of Science
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