Title: Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC

Journal Article · · Microbial Cell Factories

Not Available

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1618895
Journal Information:
Microbial Cell Factories, Journal Name: Microbial Cell Factories Journal Issue: 1 Vol. 17; ISSN 1475-2859
Publisher:
Springer Science + Business MediaCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (67)

Room temperature ionic liquids as emerging solvents for the pretreatment of lignocellulosic biomass journal April 2011
Designing ionic liquids: the chemical structure role in the toxicity journal September 2012
Direct Ethanol Production from Ionic Liquid-Pretreated Lignocellulosic Biomass by Cellulase-Displaying Yeasts journal November 2016
The cytochrome bd respiratory oxygen reductases journal November 2011
Features of promising technologies for pretreatment of lignocellulosic biomass journal April 2005
Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: A review journal July 2010
A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria journal June 2016
Under pressure: evolutionary engineering of yeast strains for improved performance in fuels and chemicals production journal April 2018
Lipophilicity parameters for ionic liquid cations and their correlation to in vitro cytotoxicity journal July 2007
Simple screening method to identify toxic/non-toxic ionic liquids: Agar diffusion test adaptation journal September 2012
Analysis of physico-chemical properties of substrates of ABC and MFS multidrug transporters of pathogenic Candida albicans journal November 2010
Essential genes as antimicrobial targets and cornerstones of synthetic biology journal November 2012
Tolerance engineering in bacteria for the production of advanced biofuels and chemicals journal August 2015
Metabolic engineering of Escherichia coli for 1-butanol production journal November 2008
Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production journal September 2013
A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins journal November 2014
Isopentenyl diphosphate (IPP)-bypass mevalonate pathways for isopentenol production journal March 2016
Base-Catalyzed Depolymerization of Solid Lignin-Rich Streams Enables Microbial Conversion journal August 2017
Dimethyl Sulfoxide Assisted Ionic Liquid Pretreatment of Switchgrass for Isoprenol Production journal January 2018
Characterization of the Acetate-Producing Pathways in Escherichia coli journal January 2005
Panorama: A Targeted Proteomics Knowledge Base journal July 2014
Identification and microbial production of a terpene-based advanced biofuel journal September 2011
An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production journal March 2014
A comprehensive strategy enabling high-resolution functional analysis of the yeast genome journal July 2008
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation journal August 2009
Improving membrane protein expression and function using genomic edits journal October 2017
Metabolic engineering for the high-yield production of isoprenoid-based C5 alcohols in E. coli journal June 2015
Evolved hexose transporter enhances xylose uptake and glucose/xylose co-utilization in Saccharomyces cerevisiae journal January 2016
Development of an E. coli strain for one-pot biofuel production from ionic liquid pretreated cellulose and switchgrass journal January 2016
Demonstrating a separation-free process coupling ionic liquid pretreatment, saccharification, and fermentation with Rhodosporidium toruloides to produce advanced biofuels journal January 2018
Anti-microbial activities of ionic liquids journal December 2002
Accumulation of ionic liquids in Escherichia coli cells journal January 2008
Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production journal January 2011
CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress journal March 2016
The CydDC ABC transporter of Escherichia coli: new roles for a reductant efflux pump journal October 2015
Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing journal September 2009
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli journal November 2011
Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus journal May 2012
One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. journal April 1989
Structure and Function of the Bacterial Heterodimeric ABC Transporter CydDC: STIMULATION OF ATPASE ACTIVITY BY THIOL AND HEME COMPOUNDS journal June 2014
A Bacterial Glutathione Transporter ( Escherichia coli CydDC) Exports Reductant to the Periplasm journal July 2005
Fast and accurate short read alignment with Burrows-Wheeler transform journal May 2009
The Sequence Alignment/Map format and SAMtools journal June 2009
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads journal June 2009
Analysis of a bacterial hygromycin B resistance gene by transcriptional and translational fusions and by DNA sequencing journal January 1983
MicrobesOnline: an integrated portal for comparative and functional genomics journal November 2009
Membrane topology and mutational analysis of Escherichia coli CydDC, an ABC-type cysteine exporter required for cytochrome assembly journal October 2004
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing journal February 2011
Transformation of E. coli by Electroporation journal June 2006
Enrichment, isolation and characterization of fungi tolerant to 1-ethyl-3-methylimidazolium acetate: Ionic liquid-tolerant fungi journal February 2011
Novel coiled-coil cell division factor ZapB stimulates Z ring assembly and cell division journal May 2008
The cydD gene product, component of a heterodimeric ABC transporter, is required for assembly of periplasmic cytochrome c and of cytochrome bd in Escherichia coli journal April 1994
Rapid Evolution of Citrate Utilization by Escherichia coli by Direct Selection Requires citT and dctA journal February 2016
HipA-Triggered Growth Arrest and β-Lactam Tolerance in Escherichia coli Are Mediated by RelA-Dependent ppGpp Synthesis journal May 2013
Identification of the cydC locus required for expression of the functional form of the cytochrome d terminal oxidase complex in Escherichia coli. journal May 1987
The temperature-sensitive growth and survival phenotypes of Escherichia coli cydDC and cydAB strains are due to deficiencies in cytochrome bd and are corrected by exogenous catalase and reducing agents. journal November 1996
Expression of the Bacillus subtilis sacB gene confers sucrose sensitivity on mycobacteria. journal February 1996
Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons journal May 2015
Scale-up and evaluation of high solid ionic liquid pretreatment and enzymatic hydrolysis of switchgrass journal January 2013
Understanding cost drivers and economic potential of two variants of ionic liquid pretreatment for cellulosic biofuel production journal January 2014
Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain journal January 2016
Transcriptional reprogramming in yeast using dCas9 and combinatorial gRNA strategies journal March 2017
Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution journal November 2017
Impact of two ionic liquids, 1-ethyl-3-methylimidazolium acetate and 1-ethyl-3-methylimidazolium methylphosphonate, on Saccharomyces cerevisiae: metabolic, physiologic, and morphological investigations journal January 2015
Development of a Native Escherichia coli Induction System for Ionic Liquid Tolerance journal July 2014
Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast journal July 2018
Standard Flow Liquid Chromatography for Shotgun Proteomics in Bioenergy Research journal April 2015