Switchgrass (Panicum virgatum L.) promoters for green tissue-specific expression of the MYB4 transcription factor for reduced-recalcitrance transgenic switchgrass

Liu, Wusheng; Mazarei, Mitra; Ye, Rongjian; Peng, Yanhui; Shao, Yuanhua; Baxter, Holly L.; Sykes, Robert W.; Turner, Geoffrey B.; Davis, Mark F.; Wang, Zeng-Yu; Dixon, Richard A.; Stewart, Jr., C. Neal

doi:10.1186/s13068-018-1119-7

Title: Switchgrass (Panicum virgatum L.) promoters for green tissue-specific expression of the MYB4 transcription factor for reduced-recalcitrance transgenic switchgrass

Journal Article · 24 April 2018 · Biotechnology for Biofuels

DOI: https://doi.org/10.1186/s13068-018-1119-7 · OSTI ID:1618722

Liu, Wusheng; Mazarei, Mitra; Ye, Rongjian; Peng, Yanhui; Shao, Yuanhua; Baxter, Holly L.; Sykes, Robert W.; Turner, Geoffrey B.; Davis, Mark F.; Wang, Zeng-Yu; Dixon, Richard A.;

Not Available

View Journal Article

Cite

Export

Save

Research Organization:: National Renewable Energy Laboratory (NREL), Golden, CO (United States)

Sponsoring Organization:: USDOE; USDOE Office of Science (SC), Office of Biological and Environmental Research

Grant/Contract Number:: AC36-08GO28308

OSTI ID:: 1618722

Report Number(s):: NREL/JA--2700-71538; 122; PII: 1119

Journal Information:: Biotechnology for Biofuels, Journal Name: Biotechnology for Biofuels Journal Issue: 1 Vol. 11; ISSN 1754-6834

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: Netherlands

Language:: English

References (65)

Protoplast isolation and transient gene expression in switchgrass,Panicum virgatum L. Mazarei, Mitra; Al-Ahmad, Hani; Rudis, Mary R. Biotechnology Journal, Vol. 3, Issue 3 https://doi.org/10.1002/biot.200700189	journal	March 2008
Transgenic switchgrass ( Panicum virgatum L.) biomass is increased by overexpression of switchgrass sucrose synthase ( PvSUS1 ) Poovaiah, Charleson R.; Mazarei, Mitra; Decker, Stephen R. Biotechnology Journal, Vol. 10, Issue 4 https://doi.org/10.1002/biot.201400499	journal	November 2014
GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. Jefferson, R. A.; Kavanagh, T. A.; Bevan, M. W. The EMBO Journal, Vol. 6, Issue 13 https://doi.org/10.1002/j.1460-2075.1987.tb02730.x	journal	December 1987
Expression of a monocot LHCP promoter in transgenic rice. Tada, Y.; Sakamoto, M.; Matsuoka, M. The EMBO Journal, Vol. 10, Issue 7 https://doi.org/10.1002/j.1460-2075.1991.tb07705.x	journal	July 1991
High-Throughput Screening of Plant Cell-Wall Composition Using Pyrolysis Molecular Beam Mass Spectroscopy Sykes, Robert; Yung, Matthew; Novaes, Evandro Biofuels https://doi.org/10.1007/978-1-60761-214-8_12	book	January 2009
Reducing the Effect of Variable Starch Levels in Biomass Recalcitrance Screening Decker, Stephen R.; Carlile, Melissa; Selig, Michael J. Biomass Conversion https://doi.org/10.1007/978-1-61779-956-3_17	book	January 2012
A nomenclature for the genes encoding the chlorophylla/b-binding proteins of higher plants Jansson, Stefan; Pichersky, Eran; Bassi, Roberto Plant Molecular Biology Reporter, Vol. 10, Issue 3 https://doi.org/10.1007/BF02668357	journal	August 1992
Constitutive and tissue-specific differential expression of the cryIA(b) gene in transgenic rice plants conferring resistance to rice insect pest Datta, K.; Vasquez, A.; Tu, J. Theoretical and Applied Genetics, Vol. 97, Issue 1-2 https://doi.org/10.1007/s001220050862	journal	July 1998
Two novel positive cis-regulatory elements involved in green tissue-specific promoter activity in rice (Oryza sativa L ssp.) Ye, Rongjian; Zhou, Fei; Lin, Yongjun Plant Cell Reports, Vol. 31, Issue 7 https://doi.org/10.1007/s00299-012-1238-8	journal	March 2012
A simple and reliable multi-gene transformation method for switchgrass Ogawa, Yoichi; Shirakawa, Makoto; Koumoto, Yasuko Plant Cell Reports, Vol. 33, Issue 7 https://doi.org/10.1007/s00299-014-1605-8	journal	April 2014
Construction of a GFP-BAR plasmid and its use for switchgrass transformation Richards, H. A.; Rudas, V. A.; Sun, H. Plant Cell Reports, Vol. 20, Issue 1 https://doi.org/10.1007/s002990000274	journal	January 2001
A protocol for consistent, large-scale production of fertile transgenic rice plants Chen, L.; Zhang, S.; Beachy, R. N. Plant Cell Reports, Vol. 18, Issue 1-2 https://doi.org/10.1007/s002990050526	journal	November 1998
Molecular characterization and functional analysis of the OsPsbR gene family in rice Li, Lihua; Ye, Taozhi; Gao, Xiaoling Molecular Genetics and Genomics, Vol. 292, Issue 2 https://doi.org/10.1007/s00438-016-1273-1	journal	November 2016
Agrobacterium-Mediated Transformation of Switchgrass and Inheritance of the Transgenes Xi, Yajun; Fu, Chunxiang; Ge, Yaxin BioEnergy Research, Vol. 2, Issue 4 https://doi.org/10.1007/s12155-009-9049-7	journal	October 2009
Downregulation of Cinnamyl Alcohol Dehydrogenase (CAD) Leads to Improved Saccharification Efficiency in Switchgrass Fu, Chunxiang; Xiao, Xirong; Xi, Yajun BioEnergy Research, Vol. 4, Issue 3, p. 153-164 https://doi.org/10.1007/s12155-010-9109-z	journal	January 2011
PvNAC1 and PvNAC2 Are Associated with Leaf Senescence and Nitrogen Use Efficiency in Switchgrass Yang, Jiading; Worley, Eric; Torres-Jerez, Ivone BioEnergy Research, Vol. 8, Issue 2 https://doi.org/10.1007/s12155-014-9566-x	journal	December 2014
Field Evaluation of Transgenic Switchgrass Plants Overexpressing PvMYB4 for Reduced Biomass Recalcitrance Baxter, Holly L.; Poovaiah, Charleson R.; Yee, Kelsey L. BioEnergy Research, Vol. 8, Issue 3 https://doi.org/10.1007/s12155-014-9570-1	journal	January 2015
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Bradford, Marion M. Analytical Biochemistry, Vol. 72, Issue 1-2 https://doi.org/10.1016/0003-2697(76)90527-3	journal	May 1976
Altered morphology in transgenic tobacco plants that overproduce cytokinins in specific tissues and organs Li, Yi; Hagen, Gretchen; Guilfoyle, Tom J. Developmental Biology, Vol. 153, Issue 2 https://doi.org/10.1016/0012-1606(92)90123-X	journal	October 1992
LEAFY controls floral meristem identity in Arabidopsis Weigel, Detlef; Alvarez, John; Smyth, David R. Cell, Vol. 69, Issue 5 https://doi.org/10.1016/0092-8674(92)90295-N	journal	May 1992
Evaluating environmental consequences of producing herbaceous crops for bioenergy McLaughlin, S. B.; Walsh, M. E. Biomass and Bioenergy, Vol. 14, Issue 4 https://doi.org/10.1016/S0961-9534(97)10066-6	journal	April 1998
Development of switchgrass (Panicum virgatum) as a bioenergy feedstock in the United States McLaughlin, Samuel B.; Adams Kszos, Lynn Biomass and Bioenergy, Vol. 28, Issue 6 https://doi.org/10.1016/j.biombioe.2004.05.006	journal	June 2005
High throughput Agrobacterium-mediated switchgrass transformation Li, Ruyu; Qu, Rongda Biomass and Bioenergy, Vol. 35, Issue 3 https://doi.org/10.1016/j.biombioe.2010.11.025	journal	March 2011
Plant synthetic promoters and transcription factors Liu, Wusheng; Stewart, C. Neal Current Opinion in Biotechnology, Vol. 37 https://doi.org/10.1016/j.copbio.2015.10.001	journal	February 2016
Plant synthetic biology Liu, Wusheng; Stewart, C. Neal Trends in Plant Science, Vol. 20, Issue 5 https://doi.org/10.1016/j.tplants.2015.02.004	journal	May 2015
Constitutive expression of Arabidopsis LEAFY or APETALA1 genes in citrus reduces their generation time Peña, Leandro; Martín-Trillo, Mar; Juárez, José Nature Biotechnology, Vol. 19, Issue 3 https://doi.org/10.1038/85719	journal	March 2001
Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis Biswal, Ajaya K.; Atmodjo, Melani A.; Li, Mi Nature Biotechnology, Vol. 36, Issue 3 https://doi.org/10.1038/nbt.4067	journal	February 2018
Advanced genetic tools for plant biotechnology Liu, Wusheng; Yuan, Joshua S.; Stewart Jr, C. Neal Nature Reviews Genetics, Vol. 14, Issue 11 https://doi.org/10.1038/nrg3583	journal	October 2013
Novel green tissue-specific synthetic promoters and cis-regulatory elements in rice Wang, Rui; Zhu, Menglin; Ye, Rongjian Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep18256	journal	December 2015
The promoters of two carboxylases in a C4 plant (maize) direct cell-specific, light-regulated expression in a C3 plant (rice) Matsuoka, Makoto; Kyozuka, Junko; Shimamoto, Ko The Plant Journal, Vol. 6, Issue 3 https://doi.org/10.1046/j.1365-313X.1994.06030311.x	journal	September 1994
Potato plants expressing antisense and sense S-adenosylmethionine decarboxylase (SAMDC) transgenes show altered levels of polyamines and ethylene: antisense plants display abnormal phenotypes Kumar, Amar; Taylor, Mark A.; Arif, Siti A. Mad The Plant Journal, Vol. 9, Issue 2 https://doi.org/10.1046/j.1365-313X.1996.09020147.x	journal	February 1996
Overexpression of RCN1 and RCN2 , rice TERMINAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase transition and altered panicle morphology in rice Nakagawa, Mayu; Shimamoto, Ko; Kyozuka, Junko The Plant Journal, Vol. 29, Issue 6 https://doi.org/10.1046/j.1365-313X.2002.01255.x	journal	March 2002
Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation Masumoto, C.; Miyazawa, S. -I.; Ohkawa, H. Proceedings of the National Academy of Sciences, Vol. 107, Issue 11 https://doi.org/10.1073/pnas.0913127107	journal	March 2010
Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass Fu, Chunxiang; Mielenz, Jonathan R.; Xiao, Xirong Proceedings of the National Academy of Sciences, Vol. 108, Issue 9, p. 3803-3808 https://doi.org/10.1073/pnas.1100310108	journal	February 2011
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Finnegan, E. J.; Peacock, W. J.; Dennis, E. S. Proceedings of the National Academy of Sciences, Vol. 93, Issue 16 https://doi.org/10.1073/pnas.93.16.8449	journal	August 1996
ORIGINAL RESEARCH: Lignocellulose recalcitrance screening by integrated high-throughput hydrothermal pretreatment and enzymatic saccharification Selig, Michael J.; Tucker, Melvin P.; Sykes, Robert W. Industrial Biotechnology, Vol. 6, Issue 2 https://doi.org/10.1089/ind.2010.0009	journal	April 2010
Clustal W and Clustal X version 2.0 Larkin, M. A.; Blackshields, G.; Brown, N. P. Bioinformatics, Vol. 23, Issue 21, p. 2947-2948 https://doi.org/10.1093/bioinformatics/btm404	journal	September 2007
Nucleotide sequences of two genes encoding the light harvesting chlorophyll a/b binding protein of rice Luan, Sheng; Bogorad, Lawrence Nucleic Acids Research, Vol. 17, Issue 6 https://doi.org/10.1093/nar/17.6.2357	journal	January 1989
Structure and Characterization of a Gene for Light-Harvesting Chi a/b Binding Protein from Rice Sakamoto, Masahiro; Sanada, Yasuharu; Tagiri, Akemi Plant and Cell Physiology, Vol. 32, Issue 3 https://doi.org/10.1093/oxfordjournals.pcp.a078092	journal	April 1991
The Promoter for the Maize C4 Pyruvate,orthophosphate Dikinase Gene Directs Cell- and Tissue-Specific Transcription in Transgenic Maize Plants Taniguchi, M.; Izawa, K.; Ku, M. S. B. Plant and Cell Physiology, Vol. 41, Issue 1 https://doi.org/10.1093/pcp/41.1.42	journal	January 2000
Light-Regulated and Cell-Specific Expression of Tomato rbcS-gusA and Rice rbcS-gusA Fusion Genes in Transgenic Rice Kyozuka, J.; McElroy, D.; Hayakawa, T. Plant Physiology, Vol. 102, Issue 3, p. 991-1000 https://doi.org/10.1104/pp.102.3.991	journal	July 1993
Constitutive E2F Expression in Tobacco Plants Exhibits Altered Cell Cycle Control and Morphological Change in a Cell Type-Specific Manner Kosugi, Shunichi; Ohashi, Yuko Plant Physiology, Vol. 132, Issue 4 https://doi.org/10.1104/pp.103.025080	journal	August 2003
How and Why Do Plants Inactivate Homologous (Trans)genes? Matzke, M. A.; Matzke, Ajm. Plant Physiology, Vol. 107, Issue 3 https://doi.org/10.1104/pp.107.3.679	journal	March 1995
Anapleurotic CO ₂ Fixation by Phosphoenolpyruvate Carboxylase in C ₃ Plants Melzer, Eva; O'Leary, Marion H. Plant Physiology, Vol. 84, Issue 1 https://doi.org/10.1104/pp.84.1.58	journal	May 1987
A rice cab gene promoter contains separate cis-acting elements that regulate expression in dicot and monocot plants. Luan, S.; Bogorad, L. The Plant Cell, Vol. 4, Issue 8 https://doi.org/10.1105/tpc.4.8.971	journal	August 1992
A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants. Lincoln, C.; Long, J.; Yamaguchi, J. The Plant Cell, Vol. 6, Issue 12 https://doi.org/10.1105/tpc.6.12.1859	journal	December 1994
A rice promoter containing both novel positive and negative cis-elements for regulation of green tissue-specific gene expression in transgenic plants Cai, Meng; Wei, Jun; Li, Xianghua Plant Biotechnology Journal, Vol. 5, Issue 5 https://doi.org/10.1111/j.1467-7652.2007.00271.x	journal	September 2007
Production of polyhydroxybutyrate in switchgrass, a value-added co-product in an important lignocellulosic biomass crop Somleva, Maria N.; Snell, Kristi D.; Beaulieu, Julie J. Plant Biotechnology Journal, Vol. 6, Issue 7 https://doi.org/10.1111/j.1467-7652.2008.00350.x	journal	September 2008
The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice Thilmony, Roger; Guttman, Mara; Thomson, James G. Plant Biotechnology Journal, Vol. 7, Issue 9 https://doi.org/10.1111/j.1467-7652.2009.00449.x	journal	December 2009
Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production: Overexpression of miR156 improved switchgrass biomass Fu, Chunxiang; Sunkar, Ramanjulu; Zhou, Chuanen Plant Biotechnology Journal, Vol. 10, Issue 4 https://doi.org/10.1111/j.1467-7652.2011.00677.x	journal	January 2012
Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production Xu, Bin; Escamilla-Treviño, Luis L.; Sathitsuksanoh, Noppadon New Phytologist, Vol. 192, Issue 3 https://doi.org/10.1111/j.1469-8137.2011.03830.x	journal	July 2011
Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks Shen, Hui; He, Xianzhi; Poovaiah, Charleson R. New Phytologist, Vol. 193, Issue 1, p. 121-136 https://doi.org/10.1111/j.1469-8137.2011.03922.x	journal	October 2011
Identification and overexpression of gibberellin 2-oxidase ( GA2ox ) in switchgrass ( Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance Wuddineh, Wegi A.; Mazarei, Mitra; Zhang, Jiyi Plant Biotechnology Journal, Vol. 13, Issue 5 https://doi.org/10.1111/pbi.12287	journal	November 2014
Expression of ZmGA20ox cDNA alters plant morphology and increases biomass production of switchgrass ( Panicum virgatum L.) Do, Phat T.; De Tar, Joann R.; Lee, Hyeyoung Plant Biotechnology Journal, Vol. 14, Issue 7 https://doi.org/10.1111/pbi.12514	journal	January 2016
Transgenic switchgrass ( Panicum virgatum L.) targeted for reduced recalcitrance to bioconversion: a 2-year comparative analysis of field-grown lines modified for target gene or genetic element expression Dumitrache, Alexandru; Natzke, Jace; Rodriguez, Miguel Plant Biotechnology Journal, Vol. 15, Issue 6 https://doi.org/10.1111/pbi.12666	journal	February 2017
Targeted mutagenesis in tetraploid switchgrass ( Panicum virgatum L.) using CRISPR/Cas9 Liu, Yang; Merrick, Paul; Zhang, Zhengzhi Plant Biotechnology Journal, Vol. 16, Issue 2 https://doi.org/10.1111/pbi.12778	journal	August 2017
Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass ( Panicum virgatum L.) Zhang, Ji-Yi; Lee, Yi-Ching; Torres-Jerez, Ivone The Plant Journal, Vol. 74, Issue 1 https://doi.org/10.1111/tpj.12104	journal	February 2013
Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation Mann, David GJ; King, Zachary R.; Liu, Wusheng BMC Biotechnology, Vol. 11, Issue 1 https://doi.org/10.1186/1472-6750-11-74	journal	July 2011
The FAST technique: a simplified Agrobacterium-based transformation method for transient gene expression analysis in seedlings of Arabidopsis and other plant species Li, Jian-Feng; Park, Eunsook; von Arnim, Albrecht G. Plant Methods, Vol. 5, Issue 1 https://doi.org/10.1186/1746-4811-5-6	journal	January 2009
Field-grown miR156 transgenic switchgrass reproduction, yield, global gene expression analysis, and bioconfinement Johnson, Chelsea R.; Millwood, Reginald J.; Tang, Yuhong Biotechnology for Biofuels, Vol. 10, Issue 1 https://doi.org/10.1186/s13068-017-0939-1	journal	November 2017
Downregulation of Cinnamyl-Alcohol Dehydrogenase in Switchgrass by RNA Silencing Results in Enhanced Glucose Release after Cellulase Treatment Saathoff, Aaron J.; Sarath, Gautam; Chow, Elaine K. PLoS ONE, Vol. 6, Issue 1 https://doi.org/10.1371/journal.pone.0016416	journal	January 2011
Overexpression of AtLOV1 in Switchgrass Alters Plant Architecture, Lignin Content, and Flowering Time Xu, Bin; Sathitsuksanoh, Noppadon; Tang, Yuhong PLoS ONE, Vol. 7, Issue 12 https://doi.org/10.1371/journal.pone.0047399	journal	December 2012
Describing and Quantifying Growth Stages of Perennial Forage Grasses Moore, K. J.; Moser, L. E.; Vogel, K. P. Agronomy Journal, Vol. 83, Issue 6 https://doi.org/10.2134/agronj1991.00021962008300060027x	journal	January 1991
Identification and Molecular Characterization of the Switchgrass AP2/ERF Transcription Factor Superfamily, and Overexpression of PvERF001 for Improvement of Biomass Characteristics for Biofuel Wuddineh, Wegi A.; Mazarei, Mitra; Turner, Geoffrey B. Frontiers in Bioengineering and Biotechnology, Vol. 3 https://doi.org/10.3389/fbioe.2015.00101	journal	July 2015
Identification and Overexpression of a Knotted1-Like Transcription Factor in Switchgrass (Panicum virgatum L.) for Lignocellulosic Feedstock Improvement Wuddineh, Wegi A.; Mazarei, Mitra; Zhang, Ji-Yi Frontiers in Plant Science, Vol. 7 https://doi.org/10.3389/fpls.2016.00520	journal	April 2016

Similar Records

Novel transcription factors PvBMY1 and PvBMY3 increase biomass yield in greenhouse-grown switchgrass (Panicum virgatum L.)

Journal Article · 2018 · Plant Science · OSTI ID:1582966

Ambavaram, Madana M. R.; Ali, Aminat; Ryan, Kieran P.; +3 more

Identification and overexpression of a knotted1-like transcription factor in switchgrass (Panicum virgatum L.) for lignocellulosic feedstock improvement

Journal Article · 2016 · Frontiers in Plant Science · OSTI ID:1254112

Wuddineh, Wegi A.; Mazarei, Mitra; Zhang, Ji -Yi; +5 more

Transgenic switchgrass (Panicum virgatum L.) biomass is increased by overexpression of switchgrass sucrose synthase (PvSUS1)

Journal Article · 2015 · Biotechnology Journal · OSTI ID:1220579

Poovaiah, C. R.; Mazarei, M.; Decker, S. R.; +4 more

Related Subjects

09 BIOMASS FUELS
green tissue-specific promoter
transgenic rice
transgenic switchgrass

Title: Switchgrass (Panicum virgatum L.) promoters for green tissue-specific expression of the MYB4 transcription factor for reduced-recalcitrance transgenic switchgrass

Citation Formats

References (65)

Similar Records

Related Subjects