Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls

Peralta, Angelo G.; Venkatachalam, Sivasankari; Stone, Sydney C.; Pattathil, Sivakumar

doi:10.1186/s13068-017-0935-5

Title: Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls

Journal Article · 30 November 2017 · Biotechnology for Biofuels

DOI: https://doi.org/10.1186/s13068-017-0935-5 · OSTI ID:1618698

Peralta, Angelo G. ^[1]; Venkatachalam, Sivasankari ^[1]; Stone, Sydney C. ^[2]; Pattathil, Sivakumar ^[1]

University of Georgia, Athens, Georgia (United States). Complex Carbohydrate Research Center; Oak Ridge National Laboratory, Oak Ridge, Tennessee (United States). BioEnergy Science Center
University of Georgia, Athens, Georgia (United States). Complex Carbohydrate Research Center

Xylan is a major hemicellulosic component in the cell walls of higher plants especially in the secondary walls of vascular cells which are playing important roles in physiological processes and overall mechanical strength. Being the second most abundant cell wall polymer after cellulose, xylan is an abundant non-cellulosic carbohydrate constituent of plant biomass. Xylan structures have been demonstrated to contribute to plant biomass recalcitrance during bioenergy applications. A critical understanding of xylan composition, structure, and biosynthesis in developing plant stems will allow an increased understanding of how cell walls are put together in this organ in a basic research, and, in applied research, will improve strategies in xylan engineering to reduce biomass recalcitrance for economically feasible biofuel production.

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Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1618698

Alternate ID(s):: OSTI ID: 1626986

Journal Information:: Biotechnology for Biofuels, Vol. 10, Issue 1; ISSN 1754-6834

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass Mortimer, J. C.; Miles, G. P.; Brown, D. M. Proceedings of the National Academy of Sciences, Vol. 107, Issue 40 https://doi.org/10.1073/pnas.1005456107	journal	September 2010
Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants Wang, H.; Avci, U.; Nakashima, J. Proceedings of the National Academy of Sciences, Vol. 107, Issue 51, p. 22338-22343 https://doi.org/10.1073/pnas.1016436107	journal	December 2010
Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEX ^TM -pre-treated biomass Pattathil, Sivakumar; Hahn, Michael G.; Dale, Bruce E. Journal of Experimental Botany, Vol. 66, Issue 14 https://doi.org/10.1093/jxb/erv107	journal	April 2015
G-fibre cell wall development in willow stems during tension wood induction Gritsch, Cristina; Wan, Yongfang; Mitchell, Rowan A. C. Journal of Experimental Botany, Vol. 66, Issue 20 https://doi.org/10.1093/jxb/erv358	journal	July 2015
Three Arabidopsis DUF579 Domain-Containing GXM Proteins are Methyltransferases Catalyzing 4-O-Methylation of Glucuronic Acid on Xylan Lee, C.; Teng, Q.; Zhong, R. Plant and Cell Physiology, Vol. 53, Issue 11 https://doi.org/10.1093/pcp/pcs138	journal	October 2012
A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies Pattathil, S.; Avci, U.; Baldwin, D. Plant Physiology, Vol. 153, Issue 2, p. 514-525 https://doi.org/10.1104/pp.109.151985	journal	April 2010
Plant Cell Walls: Figure 1. Keegstra, Kenneth Plant Physiology, Vol. 154, Issue 2 https://doi.org/10.1104/pp.110.161240	journal	October 2010
Three Members of the Arabidopsis Glycosyltransferase Family 8 Are Xylan Glucuronosyltransferases Rennie, Emilie A.; Hansen, Sara Fasmer; Baidoo, Edward E. K. Plant Physiology, Vol. 159, Issue 4 https://doi.org/10.1104/pp.112.200964	journal	June 2012
The Arabidopsis irregular xylem8 Mutant Is Deficient in Glucuronoxylan and Homogalacturonan, Which Are Essential for Secondary Cell Wall Integrity Persson, Staffan; Caffall, Kerry Hosmer; Freshour, Glenn The Plant Cell, Vol. 19, Issue 1 https://doi.org/10.1105/tpc.106.047720	journal	January 2007
Arabidopsis irregular xylem8 and irregular xylem9 : Implications for the Complexity of Glucuronoxylan Biosynthesis Peña, Maria J.; Zhong, Ruiqin; Zhou, Gong-Ke The Plant Cell, Vol. 19, Issue 2 https://doi.org/10.1105/tpc.106.049320	journal	February 2007
A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin da Costa, Ricardo M. F.; Pattathil, Sivakumar; Avci, Utku New Phytologist, Vol. 213, Issue 4 https://doi.org/10.1111/nph.14306	journal	November 2016
Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants Popper, Zoë A.; Michel, Gurvan; Hervé, Cécile Annual Review of Plant Biology, Vol. 62, Issue 1 https://doi.org/10.1146/annurev-arplant-042110-103809	journal	June 2011
Structure and Biogenesis of the cell Walls of Grasses Carpita, Nicholas C. Annual Review of Plant Physiology and Plant Molecular Biology, Vol. 47, Issue 1 https://doi.org/10.1146/annurev.arplant.47.1.445	journal	June 1996
Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes Minic, Zoran; Jamet, Elisabeth; San-Clemente, Hélène BMC Plant Biology, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2229-9-6	journal	January 2009
Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants Petersen, Pia Damm; Lau, Jane; Ebert, Berit Biotechnology for Biofuels, Vol. 5, Issue 1, Article No. 84 https://doi.org/10.1186/1754-6834-5-84	journal	January 2012
Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock Biswal, Ajaya K.; Hao, Zhangying; Pattathil, Sivakumar Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-015-0218-y	journal	January 2015
An Integrative Approach to the Identification of Arabidopsis and Rice Genes Involved in Xylan and Secondary Wall Development Oikawa, Ai; Joshi, Hiren J.; Rennie, Emilie A. PLoS ONE, Vol. 5, Issue 11 https://doi.org/10.1371/journal.pone.0015481	journal	November 2010
A review of xylan and lignin biosynthesis: Foundation for studying Arabidopsis irregular xylem mutants with pleiotropic phenotypes Hao, Zhangying; Mohnen, Debra Critical Reviews in Biochemistry and Molecular Biology, Vol. 49, Issue 3 https://doi.org/10.3109/10409238.2014.889651	journal	February 2014
Immunological Approaches to Biomass Characterization and Utilization Pattathil, Sivakumar; Avci, Utku; Zhang, Tiantian Frontiers in Bioengineering and Biotechnology, Vol. 3 https://doi.org/10.3389/fbioe.2015.00173	journal	October 2015

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MOESM1 of Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.5648809.v1 The current record is supplemented by this text	text	January 2017
MOESM2 of Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.5648830 The current record is supplemented by this text	text	January 2017
MOESM3 of Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.5648857.v1 The current record is supplemented by this text	text	January 2017
Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.c.3942331 The current record is supplemented by this collection	collection	January 2017
Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.c.3942331.v1 The current record is supplemented by this collection	collection	January 2017
MOESM3 of Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.5648857 The current record is supplemented by this text	text	January 2017
MOESM2 of Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.5648830.v1 The current record is supplemented by this text	text	January 2017
MOESM1 of Xylan epitope profiling: an enhanced approach to study organ development-dependent changes in xylan structure, biosynthesis, and deposition in plant cell walls Peralta, Angelo; Venkatachalam, Sivasankari; Stone, Sydney https://doi.org/10.6084/m9.figshare.5648809 The current record is supplemented by this text	text	January 2017